Wall clock time and date at job start Tue Mar 31 2020 21:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.58244 * 2 1 4 4 C 1.53184 * 109.70682 * 120.35794 * 2 1 3 5 5 C 1.53038 * 109.31748 * 174.49337 * 4 2 1 6 6 H 1.09001 * 109.45869 * 58.64082 * 5 4 2 7 7 N 1.46493 * 109.46111 * 178.61507 * 5 4 2 8 8 C 1.36945 * 120.00114 * 204.99796 * 7 5 4 9 9 H 1.07997 * 119.99400 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00304 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99796 * 359.97438 * 10 8 7 12 12 Si 1.86791 * 119.99897 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47397 * 89.99888 * 12 10 8 14 14 H 1.48500 * 109.47274 * 209.99616 * 12 10 8 15 15 H 1.48495 * 109.47456 * 329.99654 * 12 10 8 16 16 C 1.53039 * 109.53622 * 298.63581 * 5 4 2 17 17 C 1.53194 * 109.31483 * 61.36079 * 16 5 4 18 18 N 1.46923 * 109.58601 * 239.71841 * 2 1 3 19 19 C 1.34784 * 120.63129 * 6.44190 * 18 2 1 20 20 O 1.21279 * 119.99507 * 354.95708 * 19 18 2 21 21 C 1.50695 * 119.99996 * 174.96096 * 19 18 2 22 22 C 1.50702 * 109.46964 * 179.97438 * 21 19 18 23 23 C 1.38250 * 120.00052 * 264.72454 * 22 21 19 24 24 C 1.38217 * 120.06973 * 179.72080 * 23 22 21 25 25 C 1.38258 * 120.06693 * 0.55845 * 24 23 22 26 26 C 1.38362 * 120.00369 * 359.71890 * 25 24 23 27 27 F 1.35094 * 120.03790 * 180.02562 * 26 25 24 28 28 C 1.38375 * 119.99853 * 85.00418 * 22 21 19 29 29 F 1.35100 * 120.03329 * 0.02562 * 28 22 21 30 30 H 1.09001 * 109.47175 * 176.09336 * 1 2 3 31 31 H 1.09002 * 109.46811 * 296.09636 * 1 2 3 32 32 H 1.08998 * 109.47060 * 56.09059 * 1 2 3 33 33 H 1.09002 * 109.49614 * 294.44554 * 4 2 1 34 34 H 1.09005 * 109.49902 * 54.50527 * 4 2 1 35 35 H 0.97002 * 120.00530 * 24.99444 * 7 5 4 36 36 H 0.97003 * 119.99843 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.49301 * 301.41287 * 16 5 4 38 38 H 1.08995 * 109.49803 * 181.31434 * 16 5 4 39 39 H 1.08999 * 109.59006 * 185.58007 * 17 16 5 40 40 H 1.09000 * 109.58245 * 65.15195 * 17 16 5 41 41 H 1.08996 * 109.47160 * 299.99687 * 21 19 18 42 42 H 1.09001 * 109.47286 * 59.99202 * 21 19 18 43 43 H 1.08003 * 119.96688 * 359.97438 * 23 22 21 44 44 H 1.07998 * 119.96703 * 180.29644 * 24 23 22 45 45 H 1.08001 * 119.99582 * 179.70455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 1.2444 5 6 3.5706 -0.8443 1.1673 6 1 4.0071 0.1519 1.0962 7 7 4.0711 -1.5116 2.3716 8 6 5.3557 -1.2922 2.7923 9 1 5.9997 -0.6269 2.2364 10 6 5.8301 -1.9249 3.9331 11 7 5.0451 -2.7353 4.6108 12 14 7.5821 -1.6250 4.5072 13 1 7.6067 -0.4691 5.4392 14 1 8.0882 -2.8342 5.2050 15 1 8.4444 -1.3333 3.3340 16 6 3.9603 -1.6607 -0.0671 17 6 3.4654 -0.9424 -1.3265 18 7 2.0225 -0.6980 -1.1954 19 6 1.1670 -1.1067 -2.1533 20 8 -0.0285 -0.9817 -1.9920 21 6 1.6959 -1.7190 -3.4246 22 6 0.5429 -2.0878 -4.3221 23 6 0.0398 -3.3754 -4.3074 24 6 -1.0214 -3.7138 -5.1257 25 6 -1.5746 -2.7682 -5.9692 26 6 -1.0698 -1.4802 -5.9905 27 9 -1.6102 -0.5555 -6.8139 28 6 -0.0086 -1.1391 -5.1651 29 9 0.4864 0.1177 -5.1845 30 1 -0.3633 -1.0253 -0.0700 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5733 -0.8529 33 1 1.7689 -0.1673 2.1364 34 1 1.6076 -1.7255 1.2907 35 1 3.4926 -2.1088 2.8712 36 1 5.3767 -3.1777 5.4078 37 1 3.5037 -2.6487 -0.0087 38 1 5.0447 -1.7623 -0.1087 39 1 3.6523 -1.5664 -2.2004 40 1 3.9886 0.0077 -1.4346 41 1 2.3380 -1.0005 -3.9342 42 1 2.2705 -2.6138 -3.1853 43 1 0.4739 -4.1167 -3.6528 44 1 -1.4161 -4.7189 -5.1094 45 1 -2.4008 -3.0351 -6.6116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:03 Heat of formation + Delta-G solvation = -76.399506 kcal Electronic energy + Delta-G solvation = -29518.023270 eV Core-core repulsion = 25172.138949 eV Total energy + Delta-G solvation = -4345.884321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.67789 -48.75815 -40.60167 -39.17240 -37.37181 -34.53891 -33.75807 -32.16730 -31.95442 -30.59473 -29.40563 -28.00133 -26.91609 -24.34131 -23.14201 -23.03739 -22.95206 -21.46316 -20.15910 -18.99994 -18.10774 -17.57668 -17.20775 -17.14718 -16.88599 -16.34813 -15.88579 -15.40436 -15.14341 -15.12384 -14.86044 -14.66901 -14.11135 -14.01833 -13.73411 -13.65365 -13.35096 -13.29238 -13.12532 -12.73959 -12.41152 -12.28860 -12.18855 -12.10151 -11.88877 -11.60428 -11.52279 -11.37633 -10.94018 -10.86522 -10.78713 -10.48165 -10.26913 -9.88081 -9.74340 -9.34215 -9.00499 -8.95460 -8.91119 -8.43130 -7.02114 -5.81497 -3.10918 0.64462 0.66170 2.62510 2.87758 3.20251 3.39642 3.44819 3.46575 3.49983 4.04126 4.14576 4.36699 4.51966 4.54739 4.59972 4.74873 4.94912 5.03050 5.12623 5.14980 5.26586 5.33326 5.41877 5.46776 5.50461 5.54489 5.60300 5.64397 5.77802 5.80231 5.88527 5.93191 6.00362 6.11824 6.23973 6.33130 6.42563 6.44475 6.46093 6.51788 6.73544 6.87383 7.00898 7.50141 7.64501 8.22213 8.36752 9.47992 10.05349 10.39923 11.41011 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.002330 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.367392 B =12016.653043 C =12167.521541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.105 3.895 18 N -0.601 5.601 19 C 0.518 3.482 20 O -0.532 6.532 21 C -0.109 4.109 22 C -0.067 4.067 23 C -0.088 4.088 24 C -0.099 4.099 25 C -0.129 4.129 26 C 0.066 3.934 27 F -0.131 7.131 28 C 0.082 3.918 29 F -0.126 7.126 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -0.370 -21.910 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.018 4.018 18 N -0.335 5.335 19 C 0.305 3.695 20 O -0.409 6.409 21 C -0.148 4.148 22 C -0.068 4.068 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.148 4.148 26 C 0.046 3.954 27 F -0.109 7.109 28 C 0.062 3.938 29 F -0.105 7.105 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.208 -0.151 -21.785 24.499 hybrid contribution 0.988 0.290 0.417 1.111 sum -10.220 0.139 -21.367 23.686 Atomic orbital electron populations 1.22189 0.92831 1.03644 1.00369 1.21325 0.95415 0.95028 0.83792 0.91191 1.22291 0.97497 1.00969 0.96572 1.20156 0.90906 0.94969 0.87114 0.93469 1.42432 1.12945 1.54270 1.26755 1.19225 0.89110 1.22159 1.06641 0.91175 1.24752 0.98187 0.99797 0.98181 1.69663 1.35446 1.33407 1.19503 0.86205 0.84447 0.77110 0.78502 1.21713 1.21795 1.20765 1.22679 1.01738 1.00019 0.94767 1.21904 0.79488 1.00711 0.99679 1.48192 1.07602 1.57451 1.20247 1.20221 0.86575 0.78448 0.84245 1.90772 1.15459 1.55487 1.79201 1.20749 0.96527 1.03725 0.93821 1.19293 0.98074 0.93252 0.96214 1.21031 0.96119 0.95065 0.98431 1.21046 0.95729 0.99791 0.95119 1.21077 1.01542 0.90830 1.01331 1.17634 0.95618 0.88194 0.93987 1.91523 1.84724 1.64930 1.69754 1.17462 0.95917 0.80769 0.99675 1.91519 1.86327 1.37113 1.95510 0.91103 0.93938 0.91520 0.90659 0.91787 0.78259 0.93474 0.92152 0.90549 0.90474 0.91326 0.87490 0.86910 0.84200 0.84129 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.60 37.16 0.28 -1.64 16 2 C 0.15 2.10 3.48 -67.60 -0.24 1.86 16 3 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 4 C -0.13 -2.19 4.84 -26.62 -0.13 -2.31 16 5 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.36 5.12 -53.39 -0.27 -17.63 16 8 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 12 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 17 C 0.11 1.25 6.33 -3.71 -0.02 1.22 16 18 N -0.60 -7.93 2.97 -165.22 -0.49 -8.42 16 19 C 0.52 6.83 7.60 -10.98 -0.08 6.74 16 20 O -0.53 -8.44 11.43 5.56 0.06 -8.38 16 21 C -0.11 -1.05 4.01 -29.04 -0.12 -1.17 16 22 C -0.07 -0.69 4.38 -104.57 -0.46 -1.15 16 23 C -0.09 -0.74 9.68 -39.58 -0.38 -1.12 16 24 C -0.10 -0.70 10.04 -39.58 -0.40 -1.10 16 25 C -0.13 -1.04 10.02 -39.53 -0.40 -1.44 16 26 C 0.07 0.71 7.31 -39.37 -0.29 0.42 16 27 F -0.13 -1.54 17.18 2.25 0.04 -1.50 16 28 C 0.08 0.97 7.25 -39.36 -0.29 0.68 16 29 F -0.13 -1.66 16.48 2.25 0.04 -1.63 16 30 H 0.07 1.12 6.73 -51.93 -0.35 0.77 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 0.70 5.96 -51.93 -0.31 0.39 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.11 0.92 7.76 -51.93 -0.40 0.52 16 42 H 0.11 0.84 7.39 -51.93 -0.38 0.45 16 43 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -31.87 371.27 -8.73 -40.60 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.31 Total: 6.82 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.09 Total: -5.39 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.04 Total: -52.94 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.06 Total: -8.38 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.87 -8.73 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.796 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds