Wall clock time and date at job start Tue Mar 31 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.59226 * 2 1 4 4 C 1.53194 * 109.71481 * 120.36443 * 2 1 3 5 5 C 1.53044 * 109.31475 * 65.19650 * 4 2 1 6 6 H 1.09000 * 109.45870 * 301.37476 * 5 4 2 7 7 N 1.46500 * 109.45958 * 181.39734 * 5 4 2 8 8 C 1.36935 * 119.99795 * 154.97124 * 7 5 4 9 9 H 1.08006 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99934 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99927 * 12 10 8 16 16 C 1.53039 * 109.52234 * 61.38891 * 5 4 2 17 17 C 1.53195 * 109.31292 * 298.62478 * 16 5 4 18 18 N 1.46925 * 109.58414 * 239.71391 * 2 1 3 19 19 C 1.34782 * 120.62976 * 113.66009 * 18 2 1 20 20 O 1.21277 * 120.00072 * 0.02562 * 19 18 2 21 21 C 1.50699 * 119.99887 * 180.02562 * 19 18 2 22 22 C 1.50700 * 109.46909 * 179.97438 * 21 19 18 23 23 C 1.38263 * 120.00348 * 99.99735 * 22 21 19 24 24 C 1.38211 * 120.07434 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.06623 * 0.02562 * 24 23 22 26 26 C 1.38364 * 120.00625 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.03887 * 180.02562 * 26 25 24 28 28 C 1.38370 * 119.99961 * 279.72461 * 22 21 19 29 29 F 1.35093 * 120.03594 * 359.97438 * 28 22 21 30 30 H 1.08995 * 109.47039 * 180.28443 * 1 2 3 31 31 H 1.09007 * 109.46777 * 300.28652 * 1 2 3 32 32 H 1.09005 * 109.46876 * 60.28082 * 1 2 3 33 33 H 1.09005 * 109.48387 * 305.25404 * 4 2 1 34 34 H 1.09002 * 109.50950 * 185.16059 * 4 2 1 35 35 H 0.96997 * 120.00022 * 334.97598 * 7 5 4 36 36 H 0.97004 * 120.00335 * 0.02562 * 11 10 8 37 37 H 1.09003 * 109.50258 * 58.58023 * 16 5 4 38 38 H 1.09006 * 109.49840 * 178.64745 * 16 5 4 39 39 H 1.09000 * 109.58661 * 174.42797 * 17 16 5 40 40 H 1.08996 * 109.58886 * 294.71046 * 17 16 5 41 41 H 1.08997 * 109.47191 * 299.99807 * 21 19 18 42 42 H 1.08992 * 109.47119 * 60.00207 * 21 19 18 43 43 H 1.08002 * 119.95821 * 0.02562 * 23 22 21 44 44 H 1.07993 * 119.96856 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.99339 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0468 -0.7290 1.2443 5 6 1.6472 -2.2044 1.1691 6 1 0.5623 -2.2837 1.0994 7 7 2.1109 -2.8977 2.3735 8 6 1.4758 -4.0348 2.7963 9 1 0.6332 -4.4207 2.2417 10 6 1.9148 -4.6914 3.9378 11 7 2.9413 -4.2208 4.6139 12 14 1.0488 -6.2429 4.5142 13 1 -0.0672 -6.5604 3.5873 14 1 0.5105 -6.0303 5.8818 15 1 2.0142 -7.3711 4.5321 16 6 2.2856 -2.8449 -0.0655 17 6 1.7718 -2.1400 -1.3249 18 7 2.0225 -0.6981 -1.1953 19 6 2.6912 -0.0284 -2.1550 20 8 2.8918 1.1617 -2.0363 21 6 3.1895 -0.7585 -3.3755 22 6 3.8977 0.2108 -4.2864 23 6 5.2788 0.2754 -4.2877 24 6 5.9299 1.1635 -5.1229 25 6 5.2014 1.9897 -5.9586 26 6 3.8192 1.9276 -5.9598 27 9 3.1067 2.7341 -6.7765 28 6 3.1660 1.0323 -5.1257 29 9 1.8167 0.9656 -5.1295 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.6110 -0.2791 2.1365 34 1 3.1329 -0.6480 1.2889 35 1 2.8678 -2.5512 2.8714 36 1 3.3908 -3.4149 4.3149 37 1 3.3694 -2.7438 -0.0086 38 1 2.0203 -3.9014 -0.1056 39 1 2.2968 -2.5251 -2.1991 40 1 0.7020 -2.3187 -1.4330 41 1 3.8814 -1.5440 -3.0717 42 1 2.3454 -1.2021 -3.9034 43 1 5.8495 -0.3695 -3.6358 44 1 7.0087 1.2123 -5.1228 45 1 5.7114 2.6830 -6.6111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:08 Heat of formation + Delta-G solvation = -90.850949 kcal Electronic energy + Delta-G solvation = -29508.454914 eV Core-core repulsion = 25161.943931 eV Total energy + Delta-G solvation = -4346.510983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.68756 -48.76749 -40.51643 -39.21373 -37.63601 -34.81597 -33.54873 -32.30284 -31.93004 -30.61601 -29.28443 -28.00248 -27.27031 -24.05399 -23.15904 -23.14353 -23.03689 -21.70934 -20.43838 -18.40455 -18.11687 -17.60297 -17.43266 -17.31016 -17.11658 -16.46919 -15.81587 -15.33703 -15.16372 -15.13416 -14.81980 -14.60757 -14.38571 -13.98675 -13.92328 -13.73934 -13.58796 -13.36390 -13.11722 -12.82127 -12.70266 -12.41591 -12.33988 -12.01706 -11.90842 -11.80863 -11.55554 -11.30068 -10.95984 -10.85837 -10.57523 -10.46191 -10.09753 -9.95692 -9.86371 -9.21521 -9.20096 -9.02029 -8.94929 -8.57666 -7.09278 -6.14773 -3.15385 0.61947 0.64326 2.57544 2.83532 3.16236 3.48017 3.48271 3.54447 3.63493 4.01811 4.12395 4.33579 4.46869 4.57396 4.61584 4.72495 4.91515 4.96966 5.05404 5.10376 5.15369 5.22366 5.36724 5.40376 5.48082 5.52642 5.56706 5.62231 5.67135 5.72087 5.75099 5.80387 5.90097 5.98225 6.06394 6.18698 6.23997 6.34349 6.39256 6.42220 6.53005 6.78486 6.92059 7.42490 7.76274 8.13406 8.70901 9.17533 10.03991 10.19008 11.33605 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024663 B = 0.002364 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.023573 B =11843.134792 C =12206.402166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.134 4.134 5 C 0.184 3.816 6 H 0.053 0.947 7 N -0.736 5.736 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.150 4.150 17 C 0.105 3.895 18 N -0.599 5.599 19 C 0.519 3.481 20 O -0.541 6.541 21 C -0.105 4.105 22 C -0.070 4.070 23 C -0.090 4.090 24 C -0.099 4.099 25 C -0.128 4.128 26 C 0.066 3.934 27 F -0.130 7.130 28 C 0.085 3.915 29 F -0.126 7.126 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.366 0.634 36 H 0.256 0.744 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 9.375 -22.000 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.173 4.173 5 C 0.074 3.926 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.590 5.590 12 Si 0.915 3.085 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.192 4.192 17 C -0.019 4.019 18 N -0.333 5.333 19 C 0.306 3.694 20 O -0.418 6.418 21 C -0.145 4.145 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.147 4.147 26 C 0.046 3.954 27 F -0.109 7.109 28 C 0.064 3.936 29 F -0.104 7.104 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.199 0.801 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.957 8.735 -20.879 22.824 hybrid contribution -0.170 1.294 -1.196 1.770 sum 2.787 10.029 -22.074 24.406 Atomic orbital electron populations 1.22138 0.94944 1.02785 1.01993 1.21171 0.94090 0.97093 0.83722 0.88670 1.22228 1.01166 0.97307 0.96596 1.20126 0.96903 0.88870 0.86683 0.92951 1.42458 1.37788 1.29962 1.27533 1.20076 1.12851 1.02999 1.10267 0.91694 1.25758 0.99414 1.04446 0.94662 1.70815 1.22318 1.24299 1.41536 0.83168 0.74663 0.75077 0.75572 1.22116 1.22017 1.22027 1.22658 1.01026 1.00629 0.94847 1.21882 1.01210 0.79199 0.99579 1.48218 1.55167 1.09558 1.20315 1.20252 0.77950 0.87402 0.83785 1.90701 1.57427 1.15069 1.78648 1.20684 1.02108 0.97718 0.93946 1.19304 0.94077 0.97444 0.96290 1.21040 0.92415 0.98846 0.98486 1.21043 1.00707 0.94888 0.95112 1.21085 0.90884 1.01365 1.01383 1.17639 0.90293 0.93408 0.94089 1.91525 1.78291 1.70917 1.70153 1.17461 0.77609 0.99017 0.99464 1.91519 1.28097 1.95275 1.95504 0.91651 0.91332 0.92777 0.90657 0.92004 0.80074 0.93281 0.92325 0.90535 0.90448 0.91232 0.86776 0.87347 0.84165 0.84083 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.04 37.16 0.34 -1.74 16 2 C 0.14 2.04 3.20 -67.60 -0.22 1.82 16 3 H 0.10 1.46 7.00 -51.93 -0.36 1.10 16 4 C -0.13 -2.17 5.03 -26.61 -0.13 -2.30 16 5 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 6 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 7 N -0.74 -17.55 5.12 -53.38 -0.27 -17.82 16 8 C -0.33 -8.91 9.93 -15.06 -0.15 -9.06 16 9 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 10 C -0.05 -1.28 5.50 -17.43 -0.10 -1.37 16 11 N -0.94 -28.67 13.70 55.49 0.76 -27.91 16 12 Si 1.08 25.40 29.92 -169.99 -5.09 20.32 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 17 C 0.10 1.26 5.93 -3.71 -0.02 1.24 16 18 N -0.60 -8.03 2.68 -165.22 -0.44 -8.47 16 19 C 0.52 7.13 7.69 -10.98 -0.08 7.04 16 20 O -0.54 -9.30 15.37 5.56 0.09 -9.21 16 21 C -0.10 -1.05 3.91 -29.04 -0.11 -1.16 16 22 C -0.07 -0.74 4.42 -104.56 -0.46 -1.20 16 23 C -0.09 -0.75 9.67 -39.58 -0.38 -1.14 16 24 C -0.10 -0.71 10.04 -39.58 -0.40 -1.11 16 25 C -0.13 -1.05 10.02 -39.53 -0.40 -1.44 16 26 C 0.07 0.73 7.31 -39.36 -0.29 0.44 16 27 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 28 C 0.08 1.03 7.14 -39.36 -0.28 0.75 16 29 F -0.13 -1.71 16.57 2.25 0.04 -1.67 16 30 H 0.06 0.86 5.75 -51.93 -0.30 0.56 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.37 9.17 6.63 -40.82 -0.27 8.90 16 36 H 0.26 7.65 6.78 -40.82 -0.28 7.37 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 40 H 0.07 0.80 7.51 -51.93 -0.39 0.41 16 41 H 0.11 0.86 7.55 -51.93 -0.39 0.47 16 42 H 0.11 0.94 7.74 -51.93 -0.40 0.53 16 43 H 0.14 0.89 8.04 -52.49 -0.42 0.47 16 44 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.54 371.02 -8.34 -41.88 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.05 Total: 7.34 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.01 Total: -8.53 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.04 Total: -54.20 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.54 -8.34 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.969 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds