Wall clock time and date at job start Tue Mar 31 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.59226 * 2 1 4 4 C 1.53194 * 109.71481 * 120.36443 * 2 1 3 5 5 C 1.53044 * 109.31475 * 65.19650 * 4 2 1 6 6 H 1.09000 * 109.45870 * 301.37476 * 5 4 2 7 7 N 1.46500 * 109.45958 * 181.39734 * 5 4 2 8 8 C 1.36935 * 119.99795 * 154.97124 * 7 5 4 9 9 H 1.08006 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99934 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99927 * 12 10 8 16 16 C 1.53039 * 109.52234 * 61.38891 * 5 4 2 17 17 C 1.53195 * 109.31292 * 298.62478 * 16 5 4 18 18 N 1.46925 * 109.58414 * 239.71391 * 2 1 3 19 19 C 1.34782 * 120.62976 * 113.66009 * 18 2 1 20 20 O 1.21277 * 120.00072 * 0.02562 * 19 18 2 21 21 C 1.50699 * 119.99887 * 180.02562 * 19 18 2 22 22 C 1.50700 * 109.46909 * 179.97438 * 21 19 18 23 23 C 1.38263 * 120.00348 * 99.99735 * 22 21 19 24 24 C 1.38211 * 120.07434 * 179.97438 * 23 22 21 25 25 C 1.38258 * 120.06623 * 0.02562 * 24 23 22 26 26 C 1.38364 * 120.00625 * 359.97438 * 25 24 23 27 27 F 1.35097 * 120.03887 * 180.02562 * 26 25 24 28 28 C 1.38370 * 119.99961 * 279.72461 * 22 21 19 29 29 F 1.35093 * 120.03594 * 359.97438 * 28 22 21 30 30 H 1.08995 * 109.47039 * 180.28443 * 1 2 3 31 31 H 1.09007 * 109.46777 * 300.28652 * 1 2 3 32 32 H 1.09005 * 109.46876 * 60.28082 * 1 2 3 33 33 H 1.09005 * 109.48387 * 305.25404 * 4 2 1 34 34 H 1.09002 * 109.50950 * 185.16059 * 4 2 1 35 35 H 0.96997 * 120.00022 * 334.97598 * 7 5 4 36 36 H 0.97004 * 120.00335 * 0.02562 * 11 10 8 37 37 H 1.09003 * 109.50258 * 58.58023 * 16 5 4 38 38 H 1.09006 * 109.49840 * 178.64745 * 16 5 4 39 39 H 1.09000 * 109.58661 * 174.42797 * 17 16 5 40 40 H 1.08996 * 109.58886 * 294.71046 * 17 16 5 41 41 H 1.08997 * 109.47191 * 299.99807 * 21 19 18 42 42 H 1.08992 * 109.47119 * 60.00207 * 21 19 18 43 43 H 1.08002 * 119.95821 * 0.02562 * 23 22 21 44 44 H 1.07993 * 119.96856 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.99339 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0468 -0.7290 1.2443 5 6 1.6472 -2.2044 1.1691 6 1 0.5623 -2.2837 1.0994 7 7 2.1109 -2.8977 2.3735 8 6 1.4758 -4.0348 2.7963 9 1 0.6332 -4.4207 2.2417 10 6 1.9148 -4.6914 3.9378 11 7 2.9413 -4.2208 4.6139 12 14 1.0488 -6.2429 4.5142 13 1 -0.0672 -6.5604 3.5873 14 1 0.5105 -6.0303 5.8818 15 1 2.0142 -7.3711 4.5321 16 6 2.2856 -2.8449 -0.0655 17 6 1.7718 -2.1400 -1.3249 18 7 2.0225 -0.6981 -1.1953 19 6 2.6912 -0.0284 -2.1550 20 8 2.8918 1.1617 -2.0363 21 6 3.1895 -0.7585 -3.3755 22 6 3.8977 0.2108 -4.2864 23 6 5.2788 0.2754 -4.2877 24 6 5.9299 1.1635 -5.1229 25 6 5.2014 1.9897 -5.9586 26 6 3.8192 1.9276 -5.9598 27 9 3.1067 2.7341 -6.7765 28 6 3.1660 1.0323 -5.1257 29 9 1.8167 0.9656 -5.1295 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.6110 -0.2791 2.1365 34 1 3.1329 -0.6480 1.2889 35 1 2.8678 -2.5512 2.8714 36 1 3.3908 -3.4149 4.3149 37 1 3.3694 -2.7438 -0.0086 38 1 2.0203 -3.9014 -0.1056 39 1 2.2968 -2.5251 -2.1991 40 1 0.7020 -2.3187 -1.4330 41 1 3.8814 -1.5440 -3.0717 42 1 2.3454 -1.2021 -3.9034 43 1 5.8495 -0.3695 -3.6358 44 1 7.0087 1.2123 -5.1228 45 1 5.7114 2.6830 -6.6111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:08 Heat of formation + Delta-G solvation = -110.345162 kcal Electronic energy + Delta-G solvation = -29509.300247 eV Core-core repulsion = 25161.943931 eV Total energy + Delta-G solvation = -4347.356316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.54305 -49.63607 -41.59130 -40.01424 -38.85617 -36.51339 -34.51484 -33.76345 -33.12525 -31.29957 -30.86812 -28.91158 -28.51874 -25.79679 -24.54508 -24.01477 -23.85360 -22.93760 -21.57962 -19.72065 -19.17707 -18.92921 -18.53182 -18.33199 -17.90825 -17.38428 -16.95542 -16.43028 -16.33608 -16.08485 -16.02436 -15.77401 -15.50088 -15.48040 -15.06512 -14.97393 -14.81237 -14.33260 -14.24924 -14.00041 -13.78891 -13.29623 -13.17968 -13.08576 -12.98209 -12.75417 -12.73173 -12.61975 -12.34412 -12.22408 -12.13547 -11.98605 -11.84050 -11.49720 -11.06436 -11.00157 -10.84270 -9.92503 -9.75989 -9.72534 -9.09701 -8.35452 -5.29790 -0.07047 -0.05988 1.53891 1.60187 1.71062 1.82121 1.88351 2.40852 2.72919 2.77532 3.24283 3.41886 3.43516 3.46800 3.65361 3.72330 3.82939 3.91049 3.97252 4.03012 4.15702 4.17413 4.27197 4.28377 4.42951 4.44876 4.52763 4.55924 4.69264 4.74857 4.78271 4.85726 4.94187 4.97337 4.98066 4.99844 5.14119 5.17941 5.25517 5.26828 5.47601 5.57903 5.64511 5.75554 6.36834 6.52305 7.07877 7.12032 8.02029 8.14829 9.16561 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024663 B = 0.002364 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.023573 B =11843.134792 C =12206.402166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.084 0.916 4 C -0.122 4.122 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.750 5.750 8 C -0.320 4.320 9 H 0.070 0.930 10 C -0.108 4.108 11 N -0.981 5.981 12 Si 1.129 2.871 13 H -0.269 1.269 14 H -0.296 1.296 15 H -0.293 1.293 16 C -0.140 4.140 17 C 0.111 3.889 18 N -0.601 5.601 19 C 0.515 3.485 20 O -0.580 6.580 21 C -0.101 4.101 22 C -0.084 4.084 23 C -0.090 4.090 24 C -0.089 4.089 25 C -0.123 4.123 26 C 0.040 3.960 27 F -0.144 7.144 28 C 0.053 3.947 29 F -0.144 7.144 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.356 0.644 36 H 0.244 0.756 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.165 0.835 44 H 0.179 0.821 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 8.552 -23.874 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.102 0.898 4 C -0.161 4.161 5 C 0.071 3.929 6 H 0.067 0.933 7 N -0.391 5.391 8 C -0.451 4.451 9 H 0.088 0.912 10 C -0.299 4.299 11 N -0.629 5.629 12 Si 0.955 3.045 13 H -0.193 1.193 14 H -0.223 1.223 15 H -0.220 1.220 16 C -0.181 4.181 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.305 3.695 20 O -0.460 6.460 21 C -0.140 4.140 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.107 4.107 25 C -0.141 4.141 26 C 0.020 3.980 27 F -0.122 7.122 28 C 0.033 3.967 29 F -0.123 7.123 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.188 0.812 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.163 0.837 42 H 0.142 0.858 43 H 0.183 0.817 44 H 0.196 0.804 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.520 7.921 -22.818 24.409 hybrid contribution -0.305 1.649 -0.664 1.804 sum 3.215 9.570 -23.482 25.560 Atomic orbital electron populations 1.22075 0.93673 1.02881 1.02556 1.21011 0.94987 0.96292 0.83397 0.89763 1.22069 1.00450 0.96062 0.97516 1.20367 0.96781 0.89814 0.85940 0.93265 1.42697 1.37453 1.29720 1.29278 1.20393 1.12120 1.03138 1.09468 0.91245 1.27108 0.99867 1.07359 0.95585 1.70931 1.24239 1.24796 1.42953 0.82583 0.74468 0.71965 0.75482 1.19342 1.22292 1.21992 1.22431 1.00321 1.00115 0.95205 1.21940 1.02409 0.77894 0.98854 1.48277 1.55023 1.10052 1.19930 1.20928 0.77002 0.87110 0.84491 1.90683 1.58794 1.16978 1.79581 1.20761 1.03301 0.97857 0.92047 1.19492 0.95055 0.97668 0.96318 1.21455 0.91708 0.99081 0.98596 1.21517 1.02459 0.93270 0.93446 1.21472 0.89659 1.01538 1.01468 1.18034 0.91511 0.93851 0.94633 1.91480 1.78823 1.71346 1.70600 1.17862 0.77124 1.00605 1.01104 1.91456 1.29461 1.95553 1.95788 0.91664 0.90853 0.92212 0.91495 0.93000 0.81244 0.94581 0.93085 0.91535 0.86605 0.89973 0.83739 0.85844 0.81746 0.80403 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.04 71.98 0.65 -3.16 16 2 C 0.15 4.12 3.20 44.98 0.14 4.26 16 3 H 0.08 2.59 7.00 -2.39 -0.02 2.58 16 4 C -0.12 -3.95 5.03 30.67 0.15 -3.80 16 5 C 0.18 6.52 2.53 45.02 0.11 6.63 16 6 H 0.05 1.84 6.44 -2.39 -0.02 1.82 16 7 N -0.75 -36.10 5.12 -322.81 -1.65 -37.76 16 8 C -0.32 -17.15 9.93 84.03 0.83 -16.32 16 9 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 10 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 11 N -0.98 -60.68 13.70 21.65 0.30 -60.38 16 12 Si 1.13 50.90 29.92 68.60 2.05 52.95 16 13 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 14 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 16 C -0.14 -4.20 5.66 30.67 0.17 -4.02 16 17 C 0.11 2.37 5.93 86.36 0.51 2.88 16 18 N -0.60 -15.02 2.68 -795.03 -2.13 -17.15 16 19 C 0.52 13.32 7.69 87.66 0.67 13.99 16 20 O -0.58 -19.69 15.37 -3.02 -0.05 -19.73 16 21 C -0.10 -1.74 3.91 29.10 0.11 -1.62 16 22 C -0.08 -1.62 4.42 -19.83 -0.09 -1.71 16 23 C -0.09 -1.24 9.67 22.27 0.22 -1.02 16 24 C -0.09 -0.96 10.04 22.27 0.22 -0.74 16 25 C -0.12 -1.73 10.02 22.30 0.22 -1.50 16 26 C 0.04 0.86 7.31 22.41 0.16 1.02 16 27 F -0.14 -3.50 17.18 44.97 0.77 -2.73 16 28 C 0.05 1.27 7.14 22.41 0.16 1.43 16 29 F -0.14 -3.98 16.57 44.97 0.75 -3.24 16 30 H 0.06 1.61 5.75 -2.39 -0.01 1.60 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.36 18.36 6.63 -92.71 -0.61 17.74 16 36 H 0.24 15.06 6.78 -92.70 -0.63 14.43 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.12 1.64 5.93 -2.39 -0.01 1.62 16 40 H 0.08 1.61 7.51 -2.39 -0.02 1.60 16 41 H 0.14 1.57 7.55 -2.39 -0.02 1.55 16 42 H 0.12 1.77 7.74 -2.39 -0.02 1.75 16 43 H 0.17 1.40 8.04 -2.91 -0.02 1.37 16 44 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 45 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -75.43 371.02 5.33 -70.10 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.55 Total: 27.29 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.73 Total: -9.36 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -3.49 Total: -115.29 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.52 Total: -5.96 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -75.43 5.33 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.245 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds