Wall clock time and date at job start Tue Mar 31 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.58864 * 2 1 4 4 C 1.53189 * 109.59049 * 239.57077 * 2 1 3 5 5 C 1.53043 * 109.31702 * 185.57723 * 4 2 1 6 6 H 1.09000 * 109.45153 * 181.37853 * 5 4 2 7 7 N 1.46497 * 109.45765 * 301.34427 * 5 4 2 8 8 C 1.36938 * 120.00093 * 205.06521 * 7 5 4 9 9 H 1.08000 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00273 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99987 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99994 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47232 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46734 * 120.00296 * 12 10 8 15 15 H 1.48494 * 109.47308 * 239.99929 * 12 10 8 16 16 C 1.53044 * 109.53716 * 61.36489 * 5 4 2 17 17 C 1.53196 * 109.31025 * 298.63342 * 16 5 4 18 18 N 1.46930 * 109.58761 * 120.27931 * 2 1 3 19 19 C 1.34770 * 120.62867 * 353.42114 * 18 2 1 20 20 O 1.21274 * 120.00279 * 354.18876 * 19 18 2 21 21 C 1.50705 * 119.99741 * 174.19207 * 19 18 2 22 22 C 1.50697 * 109.46921 * 179.97438 * 21 19 18 23 23 C 1.38259 * 120.00163 * 264.72531 * 22 21 19 24 24 C 1.38219 * 120.07059 * 179.72038 * 23 22 21 25 25 C 1.38262 * 120.06840 * 0.55682 * 24 23 22 26 26 C 1.38369 * 119.99907 * 359.71779 * 25 24 23 27 27 F 1.35102 * 120.03218 * 180.02562 * 26 25 24 28 28 C 1.38371 * 120.00306 * 84.99859 * 22 21 19 29 29 F 1.35104 * 120.03409 * 0.02562 * 28 22 21 30 30 H 1.08993 * 109.47382 * 305.50482 * 1 2 3 31 31 H 1.08999 * 109.47237 * 65.50769 * 1 2 3 32 32 H 1.09000 * 109.47104 * 185.50481 * 1 2 3 33 33 H 1.09004 * 109.49905 * 65.62021 * 4 2 1 34 34 H 1.09006 * 109.49788 * 305.52514 * 4 2 1 35 35 H 0.97006 * 120.00298 * 25.06612 * 7 5 4 36 36 H 0.97000 * 119.99712 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.50041 * 58.58325 * 16 5 4 38 38 H 1.08999 * 109.49656 * 178.65660 * 16 5 4 39 39 H 1.09003 * 109.58586 * 174.41876 * 17 16 5 40 40 H 1.08992 * 109.58945 * 294.70904 * 17 16 5 41 41 H 1.08995 * 109.47352 * 299.99391 * 21 19 18 42 42 H 1.08997 * 109.47444 * 59.99817 * 21 19 18 43 43 H 1.07996 * 119.96506 * 359.97438 * 23 22 21 44 44 H 1.07994 * 119.96469 * 180.29827 * 24 23 22 45 45 H 1.08001 * 119.99701 * 179.70293 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 3.9377 -1.3476 -2.0651 7 7 4.1570 0.4884 -1.0756 8 6 5.4409 0.7022 -1.5011 9 1 6.0188 -0.1154 -1.9060 10 6 5.9993 1.9700 -1.4131 11 7 5.2949 2.9666 -0.9201 12 14 7.7509 2.2614 -1.9929 13 1 8.3225 0.9884 -2.5006 14 1 7.7504 3.2721 -3.0811 15 1 8.5721 2.7558 -0.8587 16 6 3.9570 -1.6656 0.0657 17 6 3.4651 -0.9451 1.3250 18 7 2.0225 -0.6980 1.1954 19 6 1.1673 -1.1041 2.1546 20 8 -0.0056 -0.8032 2.0883 21 6 1.6687 -1.9322 3.3096 22 6 0.5220 -2.2514 4.2339 23 6 0.2853 -1.4583 5.3413 24 6 -0.7695 -1.7463 6.1868 25 6 -1.5832 -2.8350 5.9332 26 6 -1.3455 -3.6341 4.8288 27 9 -2.1404 -4.6978 4.5801 28 6 -0.2906 -3.3416 3.9774 29 9 -0.0563 -4.1208 2.8988 30 1 -0.3634 0.5968 0.8365 31 1 -0.3634 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0986 33 1 1.7660 -0.1696 -2.1366 34 1 1.6031 -1.7270 -1.2890 35 1 3.6379 1.2229 -0.7122 36 1 5.6850 3.8526 -0.8589 37 1 3.4983 -2.6528 0.0088 38 1 5.0412 -1.7698 0.1057 39 1 3.6518 -1.5688 2.1993 40 1 3.9921 0.0028 1.4331 41 1 2.1001 -2.8591 2.9319 42 1 2.4292 -1.3730 3.8545 43 1 0.9227 -0.6103 5.5437 44 1 -0.9558 -1.1228 7.0486 45 1 -2.4042 -3.0618 6.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044758114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:11 Heat of formation + Delta-G solvation = -74.794043 kcal Electronic energy + Delta-G solvation = -30056.834892 eV Core-core repulsion = 25711.020189 eV Total energy + Delta-G solvation = -4345.814703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.60372 -48.68251 -40.47224 -39.10980 -37.39469 -34.20808 -33.62022 -32.07829 -31.89601 -30.52743 -29.16433 -27.98921 -26.84399 -24.15578 -23.51485 -23.06341 -22.90070 -21.52056 -19.92438 -18.36744 -17.99829 -17.50540 -17.24202 -17.08816 -16.77283 -16.24794 -15.83131 -15.28250 -15.07787 -15.06403 -14.67542 -14.42794 -14.02703 -13.93798 -13.83161 -13.64523 -13.41904 -13.19502 -12.97626 -12.65054 -12.37640 -12.21677 -12.07027 -11.99438 -11.78511 -11.52699 -11.35858 -11.15962 -10.95602 -10.82355 -10.62431 -10.46128 -10.24438 -9.96561 -9.67190 -9.25741 -8.98915 -8.93675 -8.77347 -8.16786 -7.02297 -5.82582 -3.11568 0.71669 0.73025 2.78470 3.00185 3.35223 3.38723 3.45124 3.46987 3.57534 4.12854 4.21725 4.43813 4.54291 4.67449 4.69787 4.81464 5.08067 5.18043 5.22936 5.30311 5.38999 5.47497 5.53365 5.56330 5.58115 5.69764 5.71269 5.75267 5.84730 5.88830 5.99582 6.00284 6.11304 6.16688 6.30195 6.41539 6.47948 6.51873 6.58901 6.71400 6.76862 6.82666 7.05131 7.65723 7.72399 8.35927 8.39579 9.47483 10.04085 10.39050 11.39872 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.002683 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.318079 B =10434.929605 C =10671.028192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.080 0.920 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.112 3.888 18 N -0.596 5.596 19 C 0.516 3.484 20 O -0.537 6.537 21 C -0.108 4.108 22 C -0.065 4.065 23 C -0.089 4.089 24 C -0.099 4.099 25 C -0.130 4.130 26 C 0.065 3.935 27 F -0.131 7.131 28 C 0.082 3.918 29 F -0.126 7.126 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 -11.535 14.056 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.010 4.010 18 N -0.329 5.329 19 C 0.304 3.696 20 O -0.415 6.415 21 C -0.148 4.148 22 C -0.066 4.066 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.149 4.149 26 C 0.045 3.955 27 F -0.110 7.110 28 C 0.062 3.938 29 F -0.104 7.104 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.246 -11.443 13.861 21.202 hybrid contribution 0.930 0.075 -0.502 1.059 sum -10.316 -11.367 13.359 20.350 Atomic orbital electron populations 1.22186 0.93289 1.02964 1.00779 1.21248 0.94764 0.96034 0.83541 0.90183 1.22246 0.97374 1.00236 0.97387 1.20189 0.90435 0.88099 0.94955 0.93123 1.42525 1.13837 1.04688 1.75419 1.19277 0.89775 0.94142 1.33747 0.91150 1.24727 0.98283 0.95902 1.01953 1.69665 1.36433 1.00547 1.51389 0.86153 0.84666 0.77649 0.77915 1.20608 1.21943 1.21941 1.22514 1.01436 0.97972 0.97171 1.21761 0.79210 1.01841 0.98195 1.48161 1.07714 1.56964 1.20056 1.20173 0.86154 0.80217 0.83084 1.90742 1.17139 1.56957 1.76663 1.20742 0.96629 1.02277 0.95156 1.19322 0.96805 0.93792 0.96704 1.21025 0.97893 0.98630 0.93151 1.21032 0.94304 0.96472 0.99949 1.21062 1.01685 0.95656 0.96481 1.17637 0.91809 0.88582 0.97451 1.91522 1.71977 1.53380 1.94089 1.17470 0.96984 0.93008 0.86319 1.91525 1.93755 1.72986 1.52152 0.90644 0.93993 0.92272 0.90744 0.92129 0.78136 0.93551 0.93240 0.90753 0.91236 0.89524 0.87530 0.87056 0.84234 0.84193 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.61 37.15 0.28 -1.89 16 2 C 0.15 2.45 3.19 -67.60 -0.22 2.23 16 3 H 0.08 1.51 6.65 -51.93 -0.35 1.17 16 4 C -0.13 -2.20 5.07 -26.61 -0.13 -2.34 16 5 C 0.17 3.21 3.10 -67.89 -0.21 3.00 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -16.63 4.31 -53.38 -0.23 -16.86 16 8 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 12 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 17 C 0.11 1.67 6.09 -3.71 -0.02 1.65 16 18 N -0.60 -9.18 2.97 -165.22 -0.49 -9.67 16 19 C 0.52 7.67 7.49 -10.99 -0.08 7.59 16 20 O -0.54 -9.29 11.60 5.56 0.06 -9.22 16 21 C -0.11 -1.21 3.96 -29.03 -0.12 -1.33 16 22 C -0.06 -0.74 4.38 -104.57 -0.46 -1.19 16 23 C -0.09 -0.81 9.68 -39.58 -0.38 -1.19 16 24 C -0.10 -0.77 10.04 -39.58 -0.40 -1.17 16 25 C -0.13 -1.13 10.02 -39.52 -0.40 -1.53 16 26 C 0.07 0.76 7.31 -39.37 -0.29 0.47 16 27 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 28 C 0.08 1.05 7.25 -39.37 -0.29 0.77 16 29 F -0.13 -1.80 16.48 2.25 0.04 -1.76 16 30 H 0.07 1.30 6.54 -51.93 -0.34 0.96 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.38 9.47 6.07 -40.82 -0.25 9.22 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 40 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 41 H 0.11 1.11 7.58 -51.93 -0.39 0.71 16 42 H 0.11 0.98 7.61 -51.93 -0.40 0.58 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -30.73 367.06 -8.59 -39.32 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.14 Total: 8.16 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.10 Total: -4.24 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.00 Total: -52.74 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.06 Total: -9.22 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.73 -8.59 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.472 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds