Wall clock time and date at job start Tue Mar 31 2020 21:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.58864 * 2 1 4 4 C 1.53189 * 109.59049 * 239.57077 * 2 1 3 5 5 C 1.53043 * 109.31702 * 185.57723 * 4 2 1 6 6 H 1.09000 * 109.45153 * 181.37853 * 5 4 2 7 7 N 1.46497 * 109.45765 * 301.34427 * 5 4 2 8 8 C 1.36938 * 120.00093 * 205.06521 * 7 5 4 9 9 H 1.08000 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00273 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99987 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99994 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47232 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46734 * 120.00296 * 12 10 8 15 15 H 1.48494 * 109.47308 * 239.99929 * 12 10 8 16 16 C 1.53044 * 109.53716 * 61.36489 * 5 4 2 17 17 C 1.53196 * 109.31025 * 298.63342 * 16 5 4 18 18 N 1.46930 * 109.58761 * 120.27931 * 2 1 3 19 19 C 1.34770 * 120.62867 * 353.42114 * 18 2 1 20 20 O 1.21274 * 120.00279 * 354.18876 * 19 18 2 21 21 C 1.50705 * 119.99741 * 174.19207 * 19 18 2 22 22 C 1.50697 * 109.46921 * 179.97438 * 21 19 18 23 23 C 1.38259 * 120.00163 * 264.72531 * 22 21 19 24 24 C 1.38219 * 120.07059 * 179.72038 * 23 22 21 25 25 C 1.38262 * 120.06840 * 0.55682 * 24 23 22 26 26 C 1.38369 * 119.99907 * 359.71779 * 25 24 23 27 27 F 1.35102 * 120.03218 * 180.02562 * 26 25 24 28 28 C 1.38371 * 120.00306 * 84.99859 * 22 21 19 29 29 F 1.35104 * 120.03409 * 0.02562 * 28 22 21 30 30 H 1.08993 * 109.47382 * 305.50482 * 1 2 3 31 31 H 1.08999 * 109.47237 * 65.50769 * 1 2 3 32 32 H 1.09000 * 109.47104 * 185.50481 * 1 2 3 33 33 H 1.09004 * 109.49905 * 65.62021 * 4 2 1 34 34 H 1.09006 * 109.49788 * 305.52514 * 4 2 1 35 35 H 0.97006 * 120.00298 * 25.06612 * 7 5 4 36 36 H 0.97000 * 119.99712 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.50041 * 58.58325 * 16 5 4 38 38 H 1.08999 * 109.49656 * 178.65660 * 16 5 4 39 39 H 1.09003 * 109.58586 * 174.41876 * 17 16 5 40 40 H 1.08992 * 109.58945 * 294.70904 * 17 16 5 41 41 H 1.08995 * 109.47352 * 299.99391 * 21 19 18 42 42 H 1.08997 * 109.47444 * 59.99817 * 21 19 18 43 43 H 1.07996 * 119.96506 * 359.97438 * 23 22 21 44 44 H 1.07994 * 119.96469 * 180.29827 * 24 23 22 45 45 H 1.08001 * 119.99701 * 179.70293 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 3.9377 -1.3476 -2.0651 7 7 4.1570 0.4884 -1.0756 8 6 5.4409 0.7022 -1.5011 9 1 6.0188 -0.1154 -1.9060 10 6 5.9993 1.9700 -1.4131 11 7 5.2949 2.9666 -0.9201 12 14 7.7509 2.2614 -1.9929 13 1 8.3225 0.9884 -2.5006 14 1 7.7504 3.2721 -3.0811 15 1 8.5721 2.7558 -0.8587 16 6 3.9570 -1.6656 0.0657 17 6 3.4651 -0.9451 1.3250 18 7 2.0225 -0.6980 1.1954 19 6 1.1673 -1.1041 2.1546 20 8 -0.0056 -0.8032 2.0883 21 6 1.6687 -1.9322 3.3096 22 6 0.5220 -2.2514 4.2339 23 6 0.2853 -1.4583 5.3413 24 6 -0.7695 -1.7463 6.1868 25 6 -1.5832 -2.8350 5.9332 26 6 -1.3455 -3.6341 4.8288 27 9 -2.1404 -4.6978 4.5801 28 6 -0.2906 -3.3416 3.9774 29 9 -0.0563 -4.1208 2.8988 30 1 -0.3634 0.5968 0.8365 31 1 -0.3634 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0986 33 1 1.7660 -0.1696 -2.1366 34 1 1.6031 -1.7270 -1.2890 35 1 3.6379 1.2229 -0.7122 36 1 5.6850 3.8526 -0.8589 37 1 3.4983 -2.6528 0.0088 38 1 5.0412 -1.7698 0.1057 39 1 3.6518 -1.5688 2.1993 40 1 3.9921 0.0028 1.4331 41 1 2.1001 -2.8591 2.9319 42 1 2.4292 -1.3730 3.8545 43 1 0.9227 -0.6103 5.5437 44 1 -0.9558 -1.1228 7.0486 45 1 -2.4042 -3.0618 6.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044758114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:10 Heat of formation + Delta-G solvation = -91.308147 kcal Electronic energy + Delta-G solvation = -30057.550998 eV Core-core repulsion = 25711.020189 eV Total energy + Delta-G solvation = -4346.530809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.51037 -49.60298 -41.66130 -39.95305 -38.71164 -35.84742 -34.67387 -33.69344 -33.08771 -31.26608 -30.85614 -29.00540 -28.11603 -25.74850 -25.17156 -23.91003 -23.79720 -22.67532 -21.21063 -19.69225 -19.16716 -18.87819 -18.33264 -17.94931 -17.85084 -17.23517 -17.07910 -16.69837 -16.15029 -16.01648 -15.75548 -15.68160 -15.47630 -15.38961 -15.04651 -14.79088 -14.59088 -14.37011 -14.22060 -13.93085 -13.53003 -13.34844 -13.08053 -12.97925 -12.95875 -12.87212 -12.73250 -12.58391 -12.45990 -12.20676 -12.05247 -11.96274 -11.93278 -11.61016 -11.38316 -10.89590 -10.21810 -9.81368 -9.72470 -9.48793 -8.94552 -7.89389 -5.16581 -0.03716 -0.02026 1.49576 1.51194 1.59788 1.64249 1.99486 2.45662 2.59711 2.80745 3.28459 3.44346 3.46350 3.60578 3.76135 3.87591 3.92979 4.00803 4.03738 4.10343 4.18860 4.31316 4.31769 4.38290 4.47951 4.50922 4.65164 4.77286 4.79991 4.85868 4.89271 4.90548 5.00733 5.07929 5.12985 5.17733 5.25098 5.26651 5.30641 5.37146 5.40891 5.59308 5.73592 5.79023 6.32758 6.53520 7.21796 7.39853 8.15276 8.39066 9.34061 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.002683 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.318079 B =10434.929605 C =10671.028192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.148 3.852 3 H 0.052 0.948 4 C -0.123 4.123 5 C 0.166 3.834 6 H 0.046 0.954 7 N -0.730 5.730 8 C -0.228 4.228 9 H 0.076 0.924 10 C -0.074 4.074 11 N -0.969 5.969 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.301 1.301 15 H -0.296 1.296 16 C -0.142 4.142 17 C 0.118 3.882 18 N -0.598 5.598 19 C 0.513 3.487 20 O -0.563 6.563 21 C -0.102 4.102 22 C -0.079 4.079 23 C -0.090 4.090 24 C -0.088 4.088 25 C -0.123 4.123 26 C 0.041 3.959 27 F -0.144 7.144 28 C 0.052 3.948 29 F -0.144 7.144 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.162 0.838 44 H 0.178 0.822 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -12.548 15.869 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.045 3.955 3 H 0.070 0.930 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.064 0.936 7 N -0.372 5.372 8 C -0.360 4.360 9 H 0.094 0.906 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.796 3.204 13 H -0.191 1.191 14 H -0.228 1.228 15 H -0.223 1.223 16 C -0.183 4.183 17 C -0.004 4.004 18 N -0.331 5.331 19 C 0.302 3.698 20 O -0.443 6.443 21 C -0.142 4.142 22 C -0.081 4.081 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.141 4.141 26 C 0.021 3.979 27 F -0.123 7.123 28 C 0.032 3.968 29 F -0.123 7.123 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.207 0.793 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.180 0.820 44 H 0.196 0.804 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.080 -12.521 15.674 22.918 hybrid contribution 0.780 0.355 -1.024 1.335 sum -10.301 -12.166 14.650 21.650 Atomic orbital electron populations 1.22006 0.92736 1.02225 1.00703 1.21076 0.95001 0.94867 0.84553 0.93001 1.22127 0.95996 1.01009 0.97056 1.20419 0.91424 0.86278 0.96104 0.93626 1.42664 1.13045 1.06259 1.75192 1.19618 0.90736 0.93980 1.31674 0.90618 1.25427 1.01752 0.96047 1.03410 1.69815 1.37914 1.00627 1.53672 0.85183 0.80786 0.77579 0.76870 1.19119 1.22840 1.22324 1.22373 1.01266 0.98624 0.95990 1.21716 0.78476 1.00866 0.99367 1.48183 1.08055 1.56977 1.19888 1.20814 0.85686 0.79851 0.83443 1.90730 1.18356 1.57947 1.77311 1.20763 0.97316 1.02223 0.93867 1.19452 0.96954 0.93962 0.97692 1.21421 0.98417 0.98561 0.92363 1.21504 0.92852 0.95901 1.00337 1.21459 1.02214 0.94989 0.95484 1.18013 0.92016 0.89181 0.98704 1.91481 1.72305 1.54128 1.94337 1.17851 0.98383 0.94004 0.86580 1.91462 1.94024 1.73634 1.53170 0.91922 0.93093 0.92942 0.91401 0.90376 0.79347 0.94309 0.90760 0.91336 0.87217 0.92637 0.86547 0.84191 0.81997 0.80432 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 7.61 71.98 0.55 -3.30 16 2 C 0.15 4.97 3.19 44.97 0.14 5.11 16 3 H 0.05 2.04 6.65 -2.38 -0.02 2.02 16 4 C -0.12 -3.99 5.07 30.67 0.16 -3.84 16 5 C 0.17 6.04 3.10 45.02 0.14 6.17 16 6 H 0.05 1.70 8.08 -2.39 -0.02 1.69 16 7 N -0.73 -33.92 4.31 -322.81 -1.39 -35.31 16 8 C -0.23 -11.84 9.93 84.03 0.83 -11.01 16 9 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 10 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 11 N -0.97 -57.25 13.06 21.65 0.28 -56.97 16 12 Si 0.97 44.67 29.55 68.60 2.03 46.69 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 15 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 16 C -0.14 -4.25 5.78 30.67 0.18 -4.07 16 17 C 0.12 3.32 6.09 86.36 0.53 3.85 16 18 N -0.60 -17.86 2.97 -795.02 -2.36 -20.22 16 19 C 0.51 14.56 7.49 87.66 0.66 15.22 16 20 O -0.56 -19.21 11.60 -3.01 -0.03 -19.24 16 21 C -0.10 -2.05 3.96 29.10 0.12 -1.93 16 22 C -0.08 -1.65 4.38 -19.83 -0.09 -1.74 16 23 C -0.09 -1.36 9.68 22.27 0.22 -1.14 16 24 C -0.09 -1.04 10.04 22.27 0.22 -0.81 16 25 C -0.12 -1.82 10.02 22.31 0.22 -1.60 16 26 C 0.04 0.92 7.31 22.41 0.16 1.08 16 27 F -0.14 -3.60 17.18 44.97 0.77 -2.83 16 28 C 0.05 1.29 7.25 22.41 0.16 1.46 16 29 F -0.14 -4.16 16.48 44.97 0.74 -3.42 16 30 H 0.06 2.18 6.54 -2.39 -0.02 2.16 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.75 6.96 -2.39 -0.02 1.74 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.37 18.94 6.07 -92.70 -0.56 18.38 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 2.20 5.93 -2.39 -0.01 2.18 16 40 H 0.06 1.94 7.74 -2.39 -0.02 1.93 16 41 H 0.12 2.12 7.58 -2.39 -0.02 2.10 16 42 H 0.14 1.95 7.61 -2.39 -0.02 1.93 16 43 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -68.64 367.06 5.16 -63.48 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.46 Total: 27.98 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.66 Total: -0.17 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.47 Total: -112.49 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.03 Total: -19.24 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.51 Total: -6.25 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.64 5.16 -63.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044758114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.829 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds