Wall clock time and date at job start Tue Mar 31 2020 21:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70342 * 2 1 4 4 C 1.53194 * 109.58433 * 239.64862 * 2 1 3 5 5 C 1.53044 * 109.31373 * 185.57617 * 4 2 1 6 6 C 1.53040 * 109.53661 * 61.36456 * 5 4 2 7 7 H 1.09000 * 109.49648 * 58.58474 * 6 5 4 8 8 N 1.46499 * 109.49758 * 178.68364 * 6 5 4 9 9 C 1.34768 * 119.99967 * 205.00027 * 8 6 5 10 10 O 1.21286 * 120.00379 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99833 * 180.02562 * 9 8 6 12 12 C 1.50701 * 109.47180 * 180.02562 * 11 9 8 13 13 C 1.38234 * 119.98698 * 264.72363 * 12 11 9 14 14 C 1.38183 * 120.05220 * 179.76769 * 13 12 11 15 15 C 1.38493 * 120.02607 * 0.50174 * 14 13 12 16 16 F 1.35096 * 120.01771 * 179.76590 * 15 14 13 17 17 C 1.38397 * 119.97330 * 359.75097 * 15 14 13 18 18 C 1.38444 * 119.95113 * 359.97438 * 17 15 14 19 19 F 1.35099 * 120.01635 * 180.02562 * 18 17 15 20 20 C 1.53193 * 109.31267 * 298.63456 * 6 5 4 21 21 N 1.46922 * 109.58819 * 120.36161 * 2 1 3 22 22 C 1.36936 * 120.63100 * 353.37190 * 21 2 1 23 23 H 1.07993 * 120.00038 * 29.03060 * 22 21 2 24 24 C 1.38812 * 119.99785 * 209.03584 * 22 21 2 25 25 N 1.31617 * 120.00378 * 15.01823 * 24 22 21 26 26 Si 1.86807 * 119.99569 * 195.01873 * 24 22 21 27 27 H 1.48494 * 109.47225 * 90.00113 * 26 24 22 28 28 H 1.48501 * 109.46797 * 209.99979 * 26 24 22 29 29 H 1.48497 * 109.47032 * 329.99739 * 26 24 22 30 30 H 1.09002 * 109.47321 * 180.35585 * 1 2 3 31 31 H 1.09005 * 109.46837 * 300.35122 * 1 2 3 32 32 H 1.09001 * 109.47185 * 60.35084 * 1 2 3 33 33 H 1.09003 * 109.49954 * 65.62825 * 4 2 1 34 34 H 1.09000 * 109.49823 * 305.53029 * 4 2 1 35 35 H 1.08997 * 109.45967 * 181.38714 * 5 4 2 36 36 H 1.09003 * 109.45879 * 301.34729 * 5 4 2 37 37 H 0.97007 * 119.99755 * 25.00765 * 8 6 5 38 38 H 1.08997 * 109.47125 * 299.99816 * 11 9 8 39 39 H 1.09001 * 109.47205 * 60.00079 * 11 9 8 40 40 H 1.07999 * 119.97392 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.99010 * 180.25916 * 14 13 12 42 42 H 1.08000 * 120.02811 * 180.02562 * 17 15 14 43 43 H 1.09004 * 109.58639 * 174.41633 * 20 6 5 44 44 H 1.08993 * 109.58902 * 294.70520 * 20 6 5 45 45 H 0.96999 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8479 -1.1703 6 6 3.9569 -1.6657 0.0632 7 1 3.4982 -2.6528 0.0050 8 7 5.4142 -1.8054 0.1172 9 6 5.9676 -2.8482 0.7672 10 8 5.2592 -3.6708 1.3080 11 6 7.4668 -2.9915 0.8232 12 6 7.8242 -4.2311 1.6022 13 6 8.1185 -4.1393 2.9497 14 6 8.4417 -5.2758 3.6663 15 6 8.4813 -6.5067 3.0328 16 9 8.8019 -7.6169 3.7326 17 6 8.1919 -6.5990 1.6826 18 6 7.8627 -5.4606 0.9668 19 9 7.5794 -5.5493 -0.3512 20 6 3.4651 -0.9470 1.3235 21 7 2.0225 -0.6996 1.1944 22 6 1.1538 -1.1129 2.1688 23 1 0.1360 -1.3673 1.9124 24 6 1.5813 -1.2047 3.4863 25 7 2.7046 -0.6266 3.8555 26 14 0.5623 -2.1489 4.7352 27 1 0.9962 -3.5688 4.7562 28 1 0.7533 -1.5529 6.0819 29 1 -0.8727 -2.0752 4.3603 30 1 -0.3634 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.7660 -0.1667 -2.1369 34 1 1.6029 -1.7252 -1.2915 35 1 3.9377 -1.3447 -2.0671 36 1 4.0061 0.1474 -1.0994 37 1 5.9809 -1.1471 -0.3149 38 1 7.8621 -3.0726 -0.1893 39 1 7.8973 -2.1177 1.3125 40 1 8.0917 -3.1793 3.4437 41 1 8.6674 -5.2035 4.7200 42 1 8.2221 -7.5585 1.1878 43 1 3.6518 -1.5719 2.1969 44 1 3.9922 0.0007 1.4329 45 1 3.0035 -0.6911 4.7761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071520500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:01 Heat of formation + Delta-G solvation = -86.240797 kcal Electronic energy + Delta-G solvation = -29708.994045 eV Core-core repulsion = 25362.682973 eV Total energy + Delta-G solvation = -4346.311072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.12225 -49.07477 -39.81600 -38.71699 -37.51139 -34.38262 -32.87026 -32.75254 -30.95777 -30.64874 -29.82872 -27.58028 -25.80450 -24.85176 -23.34849 -22.44620 -22.14351 -20.67960 -19.97257 -19.21602 -18.32773 -17.37142 -16.88235 -16.50020 -16.17579 -15.95418 -15.74949 -15.36150 -15.33474 -14.84791 -14.60293 -14.45243 -13.97210 -13.90781 -13.78057 -13.41096 -13.34545 -12.98932 -12.76165 -12.39170 -12.10797 -12.07824 -11.89375 -11.71705 -11.50795 -11.37971 -11.11510 -10.86759 -10.71276 -10.50772 -10.38789 -10.24844 -9.94877 -9.75985 -9.45011 -9.42552 -9.15920 -8.69527 -8.51864 -8.40229 -6.60617 -5.73069 -3.17404 0.80940 0.90583 3.02008 3.14150 3.43474 3.49749 3.51240 3.65735 3.75794 4.27575 4.41688 4.43413 4.54758 4.70465 4.95653 5.08209 5.28296 5.33639 5.35554 5.38414 5.51160 5.58274 5.64969 5.68222 5.71356 5.81904 5.90628 5.97933 6.09486 6.11613 6.27584 6.31725 6.39807 6.46316 6.51582 6.62760 6.63845 6.76065 6.96241 7.04909 7.13262 7.33662 7.75939 7.86445 7.93718 8.51242 8.65507 9.26062 9.90184 10.45097 11.34949 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003483 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.363702 B = 8037.043291 C = 9678.125400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.525 6.525 11 C -0.103 4.103 12 C -0.103 4.103 13 C -0.047 4.047 14 C -0.161 4.161 15 C 0.125 3.875 16 F -0.134 7.134 17 C -0.193 4.193 18 C 0.144 3.856 19 F -0.129 7.129 20 C 0.168 3.832 21 N -0.584 5.584 22 C -0.252 4.252 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.894 -4.009 -7.917 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.295 3.705 10 O -0.400 6.400 11 C -0.143 4.143 12 C -0.105 4.105 13 C -0.065 4.065 14 C -0.180 4.180 15 C 0.106 3.894 16 F -0.113 7.113 17 C -0.212 4.212 18 C 0.124 3.876 19 F -0.108 7.108 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.546 5.546 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.113 0.887 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.399 -4.644 -7.368 15.980 hybrid contribution -0.143 -0.404 0.381 0.573 sum 13.256 -5.048 -6.987 15.812 Atomic orbital electron populations 1.21803 0.96008 1.01442 1.00153 1.20487 0.93057 0.93531 0.87069 0.95768 1.22051 0.94360 1.01314 0.98901 1.21676 0.97373 0.99606 0.96752 1.21988 0.77827 1.00832 0.98221 0.90127 1.46042 1.08606 1.26651 1.55804 1.20233 0.89489 0.81780 0.78979 1.90776 1.63237 1.41838 1.44124 1.20625 0.94836 0.96793 1.02071 1.19421 1.02699 0.93304 0.95041 1.20805 0.94711 0.99076 0.91902 1.21166 1.04341 0.90946 1.01512 1.17277 1.00035 0.82929 0.89203 1.91517 1.90086 1.51095 1.78593 1.20935 1.07076 0.99475 0.93729 1.17056 0.99033 0.93207 0.78272 1.91513 1.90798 1.96901 1.31542 1.21080 0.83481 0.96851 0.94437 1.44032 1.02684 1.64752 1.19261 1.19165 0.94721 1.38104 0.86157 0.91183 1.25051 0.97740 0.99445 0.96979 1.69994 1.23345 1.44439 1.16798 0.86335 0.79791 0.80087 0.80841 1.21352 1.21809 1.20425 0.92779 0.92027 0.94342 0.92704 0.92102 0.93126 0.92304 0.77487 0.87862 0.87217 0.83699 0.83932 0.83577 0.88672 0.96610 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.27 16 2 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.37 -26.61 -0.14 -2.29 16 5 C -0.12 -1.84 5.35 -26.69 -0.14 -1.99 16 6 C 0.12 2.23 2.60 -67.81 -0.18 2.06 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -11.17 5.08 -53.69 -0.27 -11.44 16 9 C 0.51 8.48 7.79 -10.99 -0.09 8.39 16 10 O -0.52 -11.49 15.70 5.55 0.09 -11.40 16 11 C -0.10 -1.18 5.60 -29.03 -0.16 -1.35 16 12 C -0.10 -1.31 4.38 -104.54 -0.46 -1.77 16 13 C -0.05 -0.54 9.67 -39.60 -0.38 -0.92 16 14 C -0.16 -1.79 10.02 -39.51 -0.40 -2.18 16 15 C 0.12 1.50 7.30 -39.43 -0.29 1.21 16 16 F -0.13 -1.62 17.27 2.25 0.04 -1.58 16 17 C -0.19 -2.32 10.01 -39.45 -0.39 -2.72 16 18 C 0.14 1.90 7.24 -39.43 -0.29 1.61 16 19 F -0.13 -1.77 16.57 2.25 0.04 -1.73 16 20 C 0.17 4.02 4.86 -3.71 -0.02 4.00 16 21 N -0.58 -14.48 2.99 -164.78 -0.49 -14.98 16 22 C -0.25 -6.90 8.61 -15.06 -0.13 -7.03 16 23 H 0.07 1.88 6.20 -52.49 -0.33 1.55 16 24 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 25 N -0.90 -26.47 11.14 55.49 0.62 -25.86 16 26 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.39 4.55 8.60 -40.82 -0.35 4.20 16 38 H 0.10 0.95 7.79 -51.93 -0.40 0.55 16 39 H 0.11 0.95 8.05 -51.93 -0.42 0.53 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.10 2.69 6.06 -51.93 -0.31 2.38 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -33.39 373.68 -8.82 -42.21 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.35 Total: 3.72 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.09 Total: -2.01 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.15 Total: -52.27 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.39 -8.82 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071520500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.026 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds