Wall clock time and date at job start Tue Mar 31 2020 21:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58441 * 2 1 4 4 C 1.53195 * 109.58494 * 120.28118 * 2 1 3 5 5 C 1.53045 * 109.31230 * 174.42413 * 4 2 1 6 6 C 1.53040 * 109.52597 * 298.64376 * 5 4 2 7 7 H 1.09003 * 109.49508 * 301.40891 * 6 5 4 8 8 N 1.46499 * 109.49887 * 181.30959 * 6 5 4 9 9 C 1.34774 * 120.00101 * 154.99433 * 8 6 5 10 10 O 1.21286 * 120.00068 * 0.02562 * 9 8 6 11 11 C 1.50696 * 119.99906 * 179.97438 * 9 8 6 12 12 C 1.50706 * 109.47277 * 180.02562 * 11 9 8 13 13 C 1.38226 * 119.98634 * 264.73372 * 12 11 9 14 14 C 1.38193 * 120.04930 * 179.72357 * 13 12 11 15 15 C 1.38493 * 120.02275 * 0.54658 * 14 13 12 16 16 F 1.35100 * 120.01396 * 179.74857 * 15 14 13 17 17 C 1.38393 * 119.97433 * 359.72485 * 15 14 13 18 18 C 1.38441 * 119.95177 * 359.97438 * 17 15 14 19 19 F 1.35103 * 120.01244 * 179.97438 * 18 17 15 20 20 C 1.53164 * 109.33091 * 61.36902 * 6 5 4 21 21 N 1.46924 * 109.58884 * 239.57010 * 2 1 3 22 22 C 1.36938 * 120.63012 * 6.58351 * 21 2 1 23 23 H 1.08001 * 119.99545 * 330.87091 * 22 21 2 24 24 C 1.38804 * 120.00214 * 150.86945 * 22 21 2 25 25 N 1.31621 * 120.00284 * 160.75933 * 24 22 21 26 26 Si 1.86799 * 119.99869 * 340.76198 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.26297 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.26438 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.26166 * 26 24 22 30 30 H 1.08997 * 109.47241 * 299.71677 * 1 2 3 31 31 H 1.09000 * 109.47492 * 59.71878 * 1 2 3 32 32 H 1.09007 * 109.47029 * 179.72029 * 1 2 3 33 33 H 1.08998 * 109.50111 * 54.47126 * 4 2 1 34 34 H 1.09003 * 109.52494 * 294.38803 * 4 2 1 35 35 H 1.09003 * 109.45832 * 58.65438 * 5 4 2 36 36 H 1.08993 * 109.45939 * 178.62728 * 5 4 2 37 37 H 0.97006 * 119.99862 * 335.00015 * 8 6 5 38 38 H 1.08997 * 109.47638 * 300.00676 * 11 9 8 39 39 H 1.09006 * 109.47044 * 60.00911 * 11 9 8 40 40 H 1.08005 * 119.97923 * 359.97185 * 13 12 11 41 41 H 1.08001 * 119.98928 * 180.24863 * 14 13 12 42 42 H 1.08006 * 120.02275 * 180.02562 * 17 15 14 43 43 H 1.08995 * 109.59404 * 185.57314 * 20 6 5 44 44 H 1.08998 * 109.70608 * 65.20911 * 20 6 5 45 45 H 0.97003 * 120.00231 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9567 -1.6656 -0.0614 7 1 3.4980 -2.6527 -0.0019 8 7 5.4140 -1.8053 -0.1156 9 6 5.9672 -2.8489 -0.7646 10 8 5.2587 -3.6722 -1.3041 11 6 7.4663 -2.9923 -0.8208 12 6 7.8236 -4.2321 -1.5994 13 6 8.0708 -5.4184 -0.9343 14 6 8.3929 -6.5575 -1.6474 15 6 8.4795 -6.5089 -3.0288 16 9 8.7994 -7.6213 -3.7254 17 6 8.2377 -5.3204 -3.6953 18 6 7.9090 -4.1814 -2.9803 19 9 7.6733 -3.0204 -3.6298 20 6 3.4651 -0.9486 -1.3225 21 7 2.0226 -0.7011 -1.1935 22 6 1.1537 -1.1163 -2.1671 23 1 0.1366 -1.3724 -1.9096 24 6 1.5801 -1.2079 -3.4848 25 7 0.9074 -1.9431 -4.3447 26 14 3.1088 -0.2877 -4.0379 27 1 4.2944 -1.1718 -3.9040 28 1 2.9541 0.1212 -5.4571 29 1 3.2932 0.9190 -3.1924 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6029 -1.7236 1.2936 34 1 1.7660 -0.1645 2.1374 35 1 4.0061 0.1488 1.0992 36 1 3.9377 -1.3423 2.0685 37 1 5.9807 -1.1467 0.3157 38 1 7.8968 -2.1191 -1.3110 39 1 7.8619 -3.0723 0.1918 40 1 8.0082 -5.4561 0.1433 41 1 8.5819 -7.4847 -1.1270 42 1 8.3047 -5.2817 -4.7726 43 1 3.6518 -1.5745 -2.1951 44 1 3.9900 0.0000 -1.4341 45 1 1.2056 -2.0074 -5.2655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071520511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:04 Heat of formation + Delta-G solvation = -80.095182 kcal Electronic energy + Delta-G solvation = -29947.302669 eV Core-core repulsion = 25601.258091 eV Total energy + Delta-G solvation = -4346.044578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.16299 -49.05315 -39.99589 -38.87609 -37.76873 -34.58210 -32.95643 -32.77759 -31.03416 -30.78493 -30.65305 -27.70654 -25.98573 -24.79031 -23.40879 -22.83828 -22.29767 -20.80528 -20.25842 -19.29310 -18.35950 -17.42717 -17.06708 -16.60875 -16.32947 -16.00275 -15.90782 -15.43168 -15.35708 -15.03261 -14.71113 -14.56937 -14.47215 -14.02117 -13.80634 -13.63979 -13.44142 -13.09719 -13.00188 -12.47378 -12.22630 -12.13952 -12.00495 -11.91358 -11.69956 -11.54481 -11.41300 -11.26380 -10.78710 -10.70492 -10.35643 -10.25956 -10.01405 -9.70730 -9.64055 -9.37408 -9.22064 -8.84272 -8.76284 -8.46817 -6.88835 -5.87575 -3.25742 0.74266 0.84723 2.82890 3.04448 3.42630 3.48583 3.52431 3.55171 3.72347 4.21267 4.32139 4.37693 4.61011 4.63391 4.85486 4.87023 5.02577 5.15660 5.20389 5.23247 5.25281 5.46352 5.51914 5.60197 5.61127 5.74818 5.75155 5.83226 5.92478 5.99002 6.01762 6.11800 6.23466 6.26996 6.34806 6.47746 6.54276 6.57002 6.61117 6.67970 6.86847 7.00899 7.10183 7.70619 8.03796 8.42203 8.45828 9.00077 9.79807 10.15432 11.27934 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003590 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.734115 B = 7797.317647 C = 8878.663305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.126 3.874 7 H 0.091 0.909 8 N -0.726 5.726 9 C 0.507 3.493 10 O -0.519 6.519 11 C -0.103 4.103 12 C -0.108 4.108 13 C -0.050 4.050 14 C -0.163 4.163 15 C 0.128 3.872 16 F -0.133 7.133 17 C -0.191 4.191 18 C 0.148 3.852 19 F -0.125 7.125 20 C 0.121 3.879 21 N -0.598 5.598 22 C -0.262 4.262 23 H 0.092 0.908 24 C 0.030 3.970 25 N -0.906 5.906 26 Si 0.878 3.122 27 H -0.286 1.286 28 H -0.304 1.304 29 H -0.272 1.272 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.394 0.606 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.022 0.978 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.499 -2.668 11.870 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.109 0.891 8 N -0.377 5.377 9 C 0.292 3.708 10 O -0.394 6.394 11 C -0.143 4.143 12 C -0.110 4.110 13 C -0.068 4.068 14 C -0.182 4.182 15 C 0.108 3.892 16 F -0.112 7.112 17 C -0.210 4.210 18 C 0.128 3.872 19 F -0.104 7.104 20 C -0.006 4.006 21 N -0.322 5.322 22 C -0.390 4.390 23 H 0.110 0.890 24 C -0.170 4.170 25 N -0.549 5.549 26 Si 0.708 3.292 27 H -0.214 1.214 28 H -0.232 1.232 29 H -0.198 1.198 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.905 -3.323 11.229 20.565 hybrid contribution 1.213 0.820 -0.638 1.597 sum 18.118 -2.503 10.591 21.136 Atomic orbital electron populations 1.21811 0.95220 1.02026 1.00387 1.20502 0.93740 0.93300 0.86187 0.95312 1.22053 0.94090 1.01746 0.98854 1.21679 0.97602 0.99548 0.96559 1.21764 0.78010 1.01190 0.96984 0.89080 1.46107 1.08471 1.26857 1.56293 1.20360 0.89760 0.81758 0.78927 1.90807 1.63213 1.41689 1.43669 1.20614 0.94443 0.97041 1.02152 1.19400 1.03279 0.96537 0.91748 1.20707 0.95471 0.90161 1.00426 1.21126 1.04686 1.00400 0.92025 1.17275 0.99839 0.82333 0.89716 1.91525 1.90029 1.50320 1.79300 1.21006 1.06757 0.91342 1.01929 1.17124 0.98575 0.81889 0.89572 1.91561 1.91485 1.45931 1.81379 1.21678 0.85506 0.96851 0.96554 1.44369 1.01624 1.65294 1.20916 1.18893 0.95664 1.38843 0.85626 0.89020 1.25285 0.97303 0.98503 0.95880 1.69811 1.41213 1.39160 1.04667 0.87007 0.84063 0.81224 0.76886 1.21359 1.23221 1.19758 0.94115 0.91741 0.92330 0.91613 0.92209 0.92159 0.92464 0.77242 0.87618 0.87260 0.83955 0.83966 0.83372 0.90331 0.95969 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.95 37.16 0.30 -2.21 16 2 C 0.17 3.25 3.50 -67.60 -0.24 3.01 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.00 5.37 -26.61 -0.14 -2.14 16 5 C -0.12 -1.66 5.36 -26.69 -0.14 -1.80 16 6 C 0.13 2.26 2.60 -67.83 -0.18 2.08 16 7 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.73 -10.44 5.08 -53.70 -0.27 -10.71 16 9 C 0.51 8.04 7.79 -10.99 -0.09 7.95 16 10 O -0.52 -11.08 15.70 5.55 0.09 -11.00 16 11 C -0.10 -1.11 5.60 -29.03 -0.16 -1.27 16 12 C -0.11 -1.33 4.38 -104.55 -0.46 -1.79 16 13 C -0.05 -0.50 9.67 -39.60 -0.38 -0.88 16 14 C -0.16 -1.64 10.03 -39.50 -0.40 -2.03 16 15 C 0.13 1.50 7.30 -39.43 -0.29 1.22 16 16 F -0.13 -1.58 17.27 2.25 0.04 -1.54 16 17 C -0.19 -2.43 10.01 -39.45 -0.39 -2.82 16 18 C 0.15 2.09 7.24 -39.43 -0.29 1.80 16 19 F -0.13 -2.01 16.57 2.25 0.04 -1.97 16 20 C 0.12 2.73 3.78 -3.73 -0.01 2.72 16 21 N -0.60 -14.31 2.75 -164.80 -0.45 -14.76 16 22 C -0.26 -7.41 9.05 -15.06 -0.14 -7.55 16 23 H 0.09 2.71 6.39 -52.49 -0.34 2.37 16 24 C 0.03 0.89 5.24 -17.43 -0.09 0.80 16 25 N -0.91 -28.84 13.97 55.49 0.78 -28.07 16 26 Si 0.88 23.69 24.34 -169.99 -4.14 19.55 16 27 H -0.29 -7.84 6.63 56.52 0.37 -7.47 16 28 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 29 H -0.27 -7.09 6.63 56.52 0.37 -6.71 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.29 7.66 -51.93 -0.40 0.89 16 32 H 0.06 1.13 7.40 -51.93 -0.38 0.75 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 4.02 8.60 -40.82 -0.35 3.67 16 38 H 0.11 1.01 7.79 -51.93 -0.40 0.61 16 39 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 40 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 43 H 0.08 2.10 4.62 -51.93 -0.24 1.86 16 44 H 0.02 0.50 7.02 -51.93 -0.36 0.13 16 45 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -35.98 367.34 -7.77 -43.75 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.28 Total: 2.12 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.10 Total: -2.91 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.05 Total: -53.54 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.14 Total: 19.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.98 -7.77 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071520511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.344 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds