Wall clock time and date at job start Tue Mar 31 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58441 * 2 1 4 4 C 1.53195 * 109.58494 * 120.28118 * 2 1 3 5 5 C 1.53045 * 109.31230 * 174.42413 * 4 2 1 6 6 C 1.53040 * 109.52597 * 298.64376 * 5 4 2 7 7 H 1.09003 * 109.49508 * 301.40891 * 6 5 4 8 8 N 1.46499 * 109.49887 * 181.30959 * 6 5 4 9 9 C 1.34774 * 120.00101 * 154.99433 * 8 6 5 10 10 O 1.21286 * 120.00068 * 0.02562 * 9 8 6 11 11 C 1.50696 * 119.99906 * 179.97438 * 9 8 6 12 12 C 1.50706 * 109.47277 * 180.02562 * 11 9 8 13 13 C 1.38226 * 119.98634 * 264.73372 * 12 11 9 14 14 C 1.38193 * 120.04930 * 179.72357 * 13 12 11 15 15 C 1.38493 * 120.02275 * 0.54658 * 14 13 12 16 16 F 1.35100 * 120.01396 * 179.74857 * 15 14 13 17 17 C 1.38393 * 119.97433 * 359.72485 * 15 14 13 18 18 C 1.38441 * 119.95177 * 359.97438 * 17 15 14 19 19 F 1.35103 * 120.01244 * 179.97438 * 18 17 15 20 20 C 1.53164 * 109.33091 * 61.36902 * 6 5 4 21 21 N 1.46924 * 109.58884 * 239.57010 * 2 1 3 22 22 C 1.36938 * 120.63012 * 6.58351 * 21 2 1 23 23 H 1.08001 * 119.99545 * 330.87091 * 22 21 2 24 24 C 1.38804 * 120.00214 * 150.86945 * 22 21 2 25 25 N 1.31621 * 120.00284 * 160.75933 * 24 22 21 26 26 Si 1.86799 * 119.99869 * 340.76198 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.26297 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.26438 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.26166 * 26 24 22 30 30 H 1.08997 * 109.47241 * 299.71677 * 1 2 3 31 31 H 1.09000 * 109.47492 * 59.71878 * 1 2 3 32 32 H 1.09007 * 109.47029 * 179.72029 * 1 2 3 33 33 H 1.08998 * 109.50111 * 54.47126 * 4 2 1 34 34 H 1.09003 * 109.52494 * 294.38803 * 4 2 1 35 35 H 1.09003 * 109.45832 * 58.65438 * 5 4 2 36 36 H 1.08993 * 109.45939 * 178.62728 * 5 4 2 37 37 H 0.97006 * 119.99862 * 335.00015 * 8 6 5 38 38 H 1.08997 * 109.47638 * 300.00676 * 11 9 8 39 39 H 1.09006 * 109.47044 * 60.00911 * 11 9 8 40 40 H 1.08005 * 119.97923 * 359.97185 * 13 12 11 41 41 H 1.08001 * 119.98928 * 180.24863 * 14 13 12 42 42 H 1.08006 * 120.02275 * 180.02562 * 17 15 14 43 43 H 1.08995 * 109.59404 * 185.57314 * 20 6 5 44 44 H 1.08998 * 109.70608 * 65.20911 * 20 6 5 45 45 H 0.97003 * 120.00231 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9567 -1.6656 -0.0614 7 1 3.4980 -2.6527 -0.0019 8 7 5.4140 -1.8053 -0.1156 9 6 5.9672 -2.8489 -0.7646 10 8 5.2587 -3.6722 -1.3041 11 6 7.4663 -2.9923 -0.8208 12 6 7.8236 -4.2321 -1.5994 13 6 8.0708 -5.4184 -0.9343 14 6 8.3929 -6.5575 -1.6474 15 6 8.4795 -6.5089 -3.0288 16 9 8.7994 -7.6213 -3.7254 17 6 8.2377 -5.3204 -3.6953 18 6 7.9090 -4.1814 -2.9803 19 9 7.6733 -3.0204 -3.6298 20 6 3.4651 -0.9486 -1.3225 21 7 2.0226 -0.7011 -1.1935 22 6 1.1537 -1.1163 -2.1671 23 1 0.1366 -1.3724 -1.9096 24 6 1.5801 -1.2079 -3.4848 25 7 0.9074 -1.9431 -4.3447 26 14 3.1088 -0.2877 -4.0379 27 1 4.2944 -1.1718 -3.9040 28 1 2.9541 0.1212 -5.4571 29 1 3.2932 0.9190 -3.1924 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6029 -1.7236 1.2936 34 1 1.7660 -0.1645 2.1374 35 1 4.0061 0.1488 1.0992 36 1 3.9377 -1.3423 2.0685 37 1 5.9807 -1.1467 0.3157 38 1 7.8968 -2.1191 -1.3110 39 1 7.8619 -3.0723 0.1918 40 1 8.0082 -5.4561 0.1433 41 1 8.5819 -7.4847 -1.1270 42 1 8.3047 -5.2817 -4.7726 43 1 3.6518 -1.5745 -2.1951 44 1 3.9900 0.0000 -1.4341 45 1 1.2056 -2.0074 -5.2655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071520511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:03 Heat of formation + Delta-G solvation = -105.335605 kcal Electronic energy + Delta-G solvation = -29948.397175 eV Core-core repulsion = 25601.258091 eV Total energy + Delta-G solvation = -4347.139085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.16124 -50.07748 -41.21504 -39.98081 -39.17681 -36.08199 -34.67403 -33.90485 -32.60475 -32.20732 -31.81967 -28.75906 -27.62673 -26.45795 -24.51039 -24.29085 -23.35460 -22.18666 -21.56519 -20.85890 -19.32061 -18.56232 -18.35453 -18.21947 -17.72258 -17.09310 -16.98601 -16.75767 -16.48329 -16.40530 -16.20257 -15.94292 -15.51803 -15.34149 -15.17933 -14.91581 -14.83366 -14.60395 -14.40869 -13.98170 -13.79194 -13.44544 -13.12776 -13.01706 -12.96126 -12.81880 -12.66843 -12.54128 -12.51647 -12.39043 -12.07318 -11.76497 -11.71512 -11.41854 -11.31581 -10.94806 -10.78133 -10.13275 -10.12247 -9.69341 -8.87792 -8.19646 -5.50471 -0.16355 -0.03852 1.23599 1.25993 1.36096 1.63310 2.04686 2.37100 2.43628 2.81289 3.05962 3.31545 3.33231 3.46018 3.52495 3.81217 3.83856 3.98510 4.04170 4.07610 4.13281 4.27511 4.39787 4.40780 4.47700 4.60331 4.67769 4.75231 4.80712 4.84700 4.87285 4.87865 4.99302 4.99990 5.00858 5.13845 5.14875 5.18209 5.28304 5.48561 5.50768 5.65238 5.70688 5.89014 6.15759 6.60116 6.91650 7.33284 7.63535 8.02112 8.99998 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003590 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.734115 B = 7797.317647 C = 8878.663305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.156 3.844 3 H 0.046 0.954 4 C -0.121 4.121 5 C -0.105 4.105 6 C 0.137 3.863 7 H 0.053 0.947 8 N -0.710 5.710 9 C 0.500 3.500 10 O -0.584 6.584 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.043 4.043 14 C -0.154 4.154 15 C 0.114 3.886 16 F -0.137 7.137 17 C -0.207 4.207 18 C 0.111 3.889 19 F -0.147 7.147 20 C 0.119 3.881 21 N -0.614 5.614 22 C -0.234 4.234 23 H 0.068 0.932 24 C -0.036 4.036 25 N -0.958 5.958 26 Si 0.938 3.062 27 H -0.301 1.301 28 H -0.312 1.312 29 H -0.251 1.251 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.420 0.580 38 H 0.119 0.881 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.148 0.852 43 H 0.029 0.971 44 H 0.032 0.968 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.941 -1.325 16.598 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.064 0.936 4 C -0.160 4.160 5 C -0.143 4.143 6 C 0.030 3.970 7 H 0.072 0.928 8 N -0.363 5.363 9 C 0.288 3.712 10 O -0.463 6.463 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.061 4.061 14 C -0.172 4.172 15 C 0.095 3.905 16 F -0.115 7.115 17 C -0.226 4.226 18 C 0.092 3.908 19 F -0.126 7.126 20 C -0.007 4.007 21 N -0.340 5.340 22 C -0.364 4.364 23 H 0.086 0.914 24 C -0.230 4.230 25 N -0.605 5.605 26 Si 0.770 3.230 27 H -0.230 1.230 28 H -0.241 1.241 29 H -0.175 1.175 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.258 0.742 38 H 0.137 0.863 39 H 0.182 0.818 40 H 0.200 0.800 41 H 0.192 0.808 42 H 0.165 0.835 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.402 -1.907 16.040 25.246 hybrid contribution 0.402 0.342 -2.009 2.077 sum 19.805 -1.565 14.031 24.322 Atomic orbital electron populations 1.21765 0.95043 1.00878 1.01286 1.20900 0.94154 0.94072 0.85674 0.93631 1.21976 0.94998 1.00856 0.98207 1.21664 0.96626 1.00413 0.95603 1.21316 0.79906 0.99263 0.96479 0.92820 1.45895 1.07272 1.27249 1.55905 1.21309 0.91748 0.80845 0.77311 1.90793 1.65176 1.44124 1.46215 1.20710 0.90299 0.96955 1.05193 1.19746 1.03019 0.98219 0.91047 1.21201 0.93642 0.88917 1.02297 1.21554 1.02718 1.01832 0.91135 1.17481 1.00462 0.81850 0.90695 1.91512 1.90136 1.50306 1.79594 1.21129 1.07372 0.91861 1.02263 1.17555 1.00750 0.81627 0.90889 1.91493 1.92026 1.47063 1.81980 1.21625 0.85033 0.96721 0.97354 1.44584 1.01744 1.66267 1.21402 1.18922 0.95351 1.35675 0.86425 0.91412 1.25878 1.00295 1.00299 0.96526 1.69940 1.43688 1.42046 1.04816 0.86020 0.80545 0.80353 0.76132 1.22965 1.24123 1.17522 0.89632 0.94434 0.94470 0.93373 0.87869 0.89667 0.88747 0.74196 0.86276 0.81815 0.79983 0.80829 0.83461 0.95242 0.94995 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 2 C 0.16 5.62 3.50 44.98 0.16 5.78 16 3 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -3.28 5.37 30.67 0.16 -3.11 16 5 C -0.11 -2.47 5.36 30.62 0.16 -2.31 16 6 C 0.14 4.65 2.60 45.06 0.12 4.76 16 7 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 8 N -0.71 -18.30 5.08 -442.21 -2.25 -20.55 16 9 C 0.50 15.03 7.79 87.66 0.68 15.71 16 10 O -0.58 -25.39 15.70 -3.05 -0.05 -25.44 16 11 C -0.09 -1.70 5.60 29.10 0.16 -1.53 16 12 C -0.12 -2.72 4.38 -19.82 -0.09 -2.81 16 13 C -0.04 -0.72 9.67 22.26 0.22 -0.51 16 14 C -0.15 -2.71 10.03 22.32 0.22 -2.49 16 15 C 0.11 2.65 7.30 22.37 0.16 2.82 16 16 F -0.14 -3.23 17.27 44.97 0.78 -2.46 16 17 C -0.21 -5.50 10.01 22.36 0.22 -5.27 16 18 C 0.11 3.21 7.24 22.37 0.16 3.37 16 19 F -0.15 -4.97 16.57 44.97 0.74 -4.22 16 20 C 0.12 5.32 3.78 86.35 0.33 5.65 16 21 N -0.61 -29.33 2.75 -675.30 -1.86 -31.19 16 22 C -0.23 -13.71 9.05 84.03 0.76 -12.94 16 23 H 0.07 4.22 6.39 -2.91 -0.02 4.21 16 24 C -0.04 -2.24 5.24 84.86 0.44 -1.80 16 25 N -0.96 -64.60 13.97 21.65 0.30 -64.30 16 26 Si 0.94 51.48 24.34 68.60 1.67 53.15 16 27 H -0.30 -17.07 6.63 99.48 0.66 -16.41 16 28 H -0.31 -17.27 7.11 99.48 0.71 -16.57 16 29 H -0.25 -12.64 6.63 99.48 0.66 -11.98 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.49 7.66 -2.39 -0.02 1.47 16 32 H 0.04 1.44 7.40 -2.38 -0.02 1.42 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.42 6.48 8.60 -92.70 -0.80 5.68 16 38 H 0.12 1.92 7.79 -2.39 -0.02 1.91 16 39 H 0.16 1.18 8.05 -2.38 -0.02 1.17 16 40 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 43 H 0.03 1.61 4.62 -2.39 -0.01 1.60 16 44 H 0.03 1.36 7.02 -2.39 -0.02 1.34 16 45 H 0.26 16.70 8.31 -92.71 -0.77 15.93 16 Total: -1.00 -88.19 367.34 3.93 -84.26 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.13 Total: 9.52 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.45 Total: 1.22 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.80 Total: -116.03 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 1.52 Total: -6.68 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 1.67 Total: 53.15 kcal Total: -88.19 3.93 -84.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071520511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.075 kcal (2) G-P(sol) polarization free energy of solvation -88.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds