Wall clock time and date at job start Tue Mar 31 2020 21:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.58571 * 2 1 4 4 C 1.53193 * 109.58407 * 239.57241 * 2 1 3 5 5 C 1.53043 * 109.30995 * 185.57434 * 4 2 1 6 6 C 1.53040 * 109.53702 * 61.36711 * 5 4 2 7 7 H 1.08999 * 109.52232 * 178.66154 * 6 5 4 8 8 N 1.46503 * 109.49859 * 58.58556 * 6 5 4 9 9 C 1.34774 * 120.00495 * 155.16204 * 8 6 5 10 10 O 1.21282 * 119.99486 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00622 * 179.72494 * 9 8 6 12 12 C 1.50692 * 109.47597 * 180.27507 * 11 9 8 13 13 C 1.38232 * 119.98912 * 264.72559 * 12 11 9 14 14 C 1.38184 * 120.05227 * 179.71911 * 13 12 11 15 15 C 1.38494 * 120.02374 * 0.55764 * 14 13 12 16 16 F 1.35100 * 120.01466 * 179.74449 * 15 14 13 17 17 C 1.38393 * 119.97469 * 359.71536 * 15 14 13 18 18 C 1.38443 * 119.95315 * 0.02562 * 17 15 14 19 19 F 1.35094 * 120.01757 * 179.97438 * 18 17 15 20 20 C 1.53193 * 109.31376 * 298.63264 * 6 5 4 21 21 N 1.46928 * 108.77347 * 54.63736 * 20 6 5 22 22 C 1.36933 * 120.63307 * 126.37051 * 21 20 6 23 23 H 1.08002 * 119.99973 * 209.08003 * 22 21 20 24 24 C 1.38814 * 119.99711 * 29.07842 * 22 21 20 25 25 N 1.31617 * 120.00207 * 14.93585 * 24 22 21 26 26 Si 1.86801 * 119.99769 * 194.93659 * 24 22 21 27 27 H 1.48499 * 109.47320 * 90.00177 * 26 24 22 28 28 H 1.48498 * 109.47224 * 210.00270 * 26 24 22 29 29 H 1.48499 * 109.47117 * 329.99984 * 26 24 22 30 30 H 1.08997 * 109.47019 * 299.71449 * 1 2 3 31 31 H 1.08995 * 109.47309 * 59.71934 * 1 2 3 32 32 H 1.09004 * 109.47283 * 179.71540 * 1 2 3 33 33 H 1.08996 * 109.50366 * 305.52973 * 4 2 1 34 34 H 1.08998 * 109.50131 * 65.62890 * 4 2 1 35 35 H 1.08996 * 109.46261 * 301.34543 * 5 4 2 36 36 H 1.09006 * 109.46079 * 181.38344 * 5 4 2 37 37 H 0.97001 * 120.00068 * 335.16099 * 8 6 5 38 38 H 1.08996 * 109.46992 * 300.27776 * 11 9 8 39 39 H 1.09003 * 109.46922 * 60.27102 * 11 9 8 40 40 H 1.08006 * 119.96975 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.99009 * 180.29205 * 14 13 12 42 42 H 1.08003 * 120.02376 * 180.02562 * 17 15 14 43 43 H 1.09004 * 109.58272 * 174.42260 * 20 6 5 44 44 H 1.08994 * 109.58560 * 294.84559 * 20 6 5 45 45 H 0.97005 * 119.99997 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5675 -0.8494 -1.1691 6 6 3.9569 -1.6656 0.0655 7 1 5.0411 -1.7699 0.1060 8 7 3.3406 -2.9924 -0.0111 9 6 3.8952 -4.0320 0.6432 10 8 4.9049 -3.8691 1.2950 11 6 3.2578 -5.3955 0.5695 12 6 4.0637 -6.3717 1.3870 13 6 5.0238 -7.1568 0.7765 14 6 5.7676 -8.0483 1.5259 15 6 5.5439 -8.1644 2.8877 16 9 6.2677 -9.0397 3.6192 17 6 4.5791 -7.3830 3.4990 18 6 3.8382 -6.4863 2.7482 19 9 2.8956 -5.7232 3.3435 20 6 3.4651 -0.9452 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1108 2.1699 23 1 0.1362 -1.3666 1.9133 24 6 1.5806 -1.2004 3.4877 25 7 2.7040 -0.6221 3.8564 26 14 0.5607 -2.1419 4.7379 27 1 0.9941 -3.5620 4.7617 28 1 0.7513 -1.5436 6.0836 29 1 -0.8741 -2.0684 4.3623 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6029 -1.7269 -1.2893 34 1 1.7660 -0.1696 -2.1366 35 1 4.0061 0.1460 -1.0996 36 1 3.9378 -1.3474 -2.0653 37 1 2.5332 -3.1228 -0.5327 38 1 2.2425 -5.3437 0.9626 39 1 3.2290 -5.7275 -0.4684 40 1 5.1956 -7.0704 -0.2863 41 1 6.5208 -8.6578 1.0487 42 1 4.4043 -7.4725 4.5610 43 1 3.6519 -1.5690 2.1990 44 1 3.9904 0.0038 1.4316 45 1 3.0021 -0.6844 4.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071520513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:06 Heat of formation + Delta-G solvation = -103.512137 kcal Electronic energy + Delta-G solvation = -30567.974044 eV Core-core repulsion = 26220.914031 eV Total energy + Delta-G solvation = -4347.060013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.10764 -50.05145 -41.10539 -39.91002 -38.91261 -35.72821 -34.48425 -33.83139 -32.11588 -31.79401 -31.68172 -28.56772 -27.66239 -26.61772 -24.25115 -23.90100 -23.42666 -22.11631 -21.56935 -20.33441 -19.26773 -18.38332 -18.32912 -18.07228 -17.27351 -17.00767 -16.92439 -16.64897 -16.36621 -16.24654 -15.93083 -15.65492 -15.47379 -15.39019 -14.93998 -14.76804 -14.66258 -14.40763 -14.06029 -13.91288 -13.61181 -13.05031 -12.97128 -12.94063 -12.81811 -12.74542 -12.61398 -12.53760 -12.39146 -12.34636 -12.09683 -12.05069 -11.55081 -11.19079 -11.02669 -10.84698 -10.52180 -10.09077 -9.87231 -9.64801 -8.56764 -7.81984 -5.26820 -0.12098 -0.00759 1.37504 1.43373 1.47462 1.79794 2.19782 2.49445 2.62067 2.84899 3.34861 3.37410 3.51760 3.56176 3.65361 3.86188 3.99937 4.09670 4.13656 4.15066 4.22983 4.42906 4.52300 4.53743 4.68080 4.75962 4.79383 4.85176 4.86459 4.91761 4.99468 5.01643 5.07440 5.13588 5.15523 5.19928 5.30447 5.36654 5.59452 5.64809 5.72084 5.74161 5.77930 5.80653 6.44574 6.77309 7.19630 7.47577 7.94795 8.44392 9.22669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.004234 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.909942 B = 6611.091061 C = 8067.854780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.062 0.938 8 N -0.691 5.691 9 C 0.508 3.492 10 O -0.589 6.589 11 C -0.096 4.096 12 C -0.114 4.114 13 C -0.042 4.042 14 C -0.151 4.151 15 C 0.116 3.884 16 F -0.136 7.136 17 C -0.206 4.206 18 C 0.108 3.892 19 F -0.150 7.150 20 C 0.171 3.829 21 N -0.594 5.594 22 C -0.231 4.231 23 H 0.078 0.922 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.940 3.060 27 H -0.296 1.296 28 H -0.304 1.304 29 H -0.259 1.259 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.145 0.855 43 H 0.046 0.954 44 H -0.010 1.010 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -13.439 -15.428 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.080 0.920 8 N -0.342 5.342 9 C 0.295 3.705 10 O -0.470 6.470 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.059 4.059 14 C -0.169 4.169 15 C 0.097 3.903 16 F -0.114 7.114 17 C -0.226 4.226 18 C 0.089 3.911 19 F -0.129 7.129 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.362 4.362 23 H 0.096 0.904 24 C -0.247 4.247 25 N -0.585 5.585 26 Si 0.771 3.229 27 H -0.223 1.223 28 H -0.231 1.231 29 H -0.183 1.183 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.246 0.754 38 H 0.121 0.879 39 H 0.176 0.824 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.163 0.837 43 H 0.064 0.936 44 H 0.008 0.992 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.300 -13.281 -14.782 20.005 hybrid contribution -0.650 0.080 2.262 2.354 sum 1.650 -13.202 -12.520 18.269 Atomic orbital electron populations 1.21726 0.94687 1.01459 1.00711 1.20794 0.94187 0.93124 0.87179 0.97221 1.21944 0.94692 1.01229 0.97778 1.21651 0.97272 0.99703 0.96049 1.21411 0.96178 0.82837 0.97271 0.91963 1.45707 1.29788 1.07680 1.51017 1.20937 0.84111 0.87254 0.78211 1.90684 1.27916 1.85986 1.42398 1.20655 0.99391 0.89173 1.04307 1.19723 1.00622 0.99724 0.91449 1.21178 0.90875 0.91661 1.02232 1.21533 1.02651 1.01734 0.90993 1.17422 0.92053 0.90448 0.90405 1.91509 1.75761 1.66533 1.77645 1.21093 0.99578 0.99821 1.02101 1.17657 0.89618 0.91997 0.91818 1.91538 1.62720 1.74235 1.84388 1.20861 0.84135 0.95059 0.95591 1.44265 1.02177 1.65533 1.19816 1.19417 0.95092 1.35329 0.86339 0.90403 1.25662 0.98741 1.01355 0.98924 1.70156 1.25234 1.46960 1.16134 0.85644 0.79741 0.78411 0.79142 1.22349 1.23097 1.18280 0.94908 0.90586 0.92752 0.91350 0.89204 0.91412 0.89215 0.75394 0.87857 0.82376 0.79946 0.80518 0.83713 0.93588 0.99221 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 7.94 71.98 0.57 -3.64 16 2 C 0.15 5.60 3.50 44.97 0.16 5.76 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.09 5.21 30.67 0.16 -2.93 16 5 C -0.11 -2.96 5.59 30.62 0.17 -2.79 16 6 C 0.13 4.76 2.81 45.07 0.13 4.88 16 7 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 8 N -0.69 -22.27 4.92 -442.16 -2.17 -24.44 16 9 C 0.51 17.74 7.79 87.66 0.68 18.42 16 10 O -0.59 -26.55 15.70 -3.04 -0.05 -26.60 16 11 C -0.10 -2.38 5.60 29.10 0.16 -2.22 16 12 C -0.11 -3.06 4.38 -19.82 -0.09 -3.15 16 13 C -0.04 -0.80 9.67 22.26 0.22 -0.58 16 14 C -0.15 -2.82 10.02 22.32 0.22 -2.60 16 15 C 0.12 2.85 7.30 22.37 0.16 3.01 16 16 F -0.14 -3.30 17.27 44.97 0.78 -2.52 16 17 C -0.21 -6.04 10.01 22.36 0.22 -5.82 16 18 C 0.11 3.61 7.24 22.37 0.16 3.77 16 19 F -0.15 -6.20 16.56 44.97 0.74 -5.46 16 20 C 0.17 8.44 4.89 86.36 0.42 8.86 16 21 N -0.59 -28.14 2.91 -675.23 -1.96 -30.10 16 22 C -0.23 -12.27 8.60 84.03 0.72 -11.55 16 23 H 0.08 3.93 6.21 -2.91 -0.02 3.92 16 24 C -0.05 -3.02 4.96 84.86 0.42 -2.60 16 25 N -0.94 -59.15 11.14 21.65 0.24 -58.91 16 26 Si 0.94 47.64 29.58 68.60 2.03 49.67 16 27 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 28 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 29 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 30 H 0.03 1.24 7.62 -2.39 -0.02 1.22 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.75 7.44 -2.38 -0.02 1.73 16 33 H 0.07 1.66 6.40 -2.39 -0.02 1.64 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.41 10.67 6.77 -92.71 -0.63 10.04 16 38 H 0.10 2.69 7.79 -2.39 -0.02 2.67 16 39 H 0.16 2.12 8.05 -2.39 -0.02 2.10 16 40 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.24 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -79.18 370.16 4.50 -74.68 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.40 Total: 16.84 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.50 Total: 6.84 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.90 Total: -113.45 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 1.52 Total: -7.98 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -79.18 4.50 -74.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071520513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.836 kcal (2) G-P(sol) polarization free energy of solvation -79.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds