Wall clock time and date at job start Tue Mar 31 2020 21:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70080 * 2 1 4 4 C 1.53186 * 109.58866 * 120.35921 * 2 1 3 5 5 C 1.53036 * 109.31171 * 174.42149 * 4 2 1 6 6 C 1.53037 * 109.52924 * 298.63871 * 5 4 2 7 7 H 1.08995 * 109.49956 * 181.30513 * 6 5 4 8 8 N 1.46501 * 109.50028 * 301.41153 * 6 5 4 9 9 C 1.34771 * 119.99793 * 204.99809 * 8 6 5 10 10 O 1.21280 * 120.00280 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99773 * 179.97438 * 9 8 6 12 12 C 1.50705 * 109.46910 * 180.02562 * 11 9 8 13 13 C 1.38231 * 119.98088 * 264.71932 * 12 11 9 14 14 C 1.38193 * 120.04857 * 179.76813 * 13 12 11 15 15 C 1.38497 * 120.02041 * 0.51098 * 14 13 12 16 16 F 1.35097 * 120.00673 * 179.76558 * 15 14 13 17 17 C 1.38392 * 119.97694 * 359.74515 * 15 14 13 18 18 C 1.38441 * 119.99138 * 85.00066 * 12 11 9 19 19 F 1.35101 * 120.01326 * 359.94943 * 18 12 11 20 20 C 1.53167 * 109.32452 * 61.37465 * 6 5 4 21 21 N 1.46925 * 108.76712 * 305.35439 * 20 6 5 22 22 C 1.36934 * 120.63369 * 233.63276 * 21 20 6 23 23 H 1.07997 * 120.00636 * 150.14825 * 22 21 20 24 24 C 1.38814 * 119.99812 * 330.14196 * 22 21 20 25 25 N 1.31627 * 119.99987 * 344.50422 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.49814 * 24 22 21 27 27 H 1.48505 * 109.47105 * 90.00789 * 26 24 22 28 28 H 1.48505 * 109.47268 * 210.00080 * 26 24 22 29 29 H 1.48493 * 109.47507 * 330.00306 * 26 24 22 30 30 H 1.09005 * 109.47099 * 299.63763 * 1 2 3 31 31 H 1.08995 * 109.47578 * 59.63905 * 1 2 3 32 32 H 1.09002 * 109.47210 * 179.64437 * 1 2 3 33 33 H 1.09000 * 109.49689 * 54.47191 * 4 2 1 34 34 H 1.09001 * 109.49640 * 294.37495 * 4 2 1 35 35 H 1.09001 * 109.46108 * 58.65501 * 5 4 2 36 36 H 1.09007 * 109.45896 * 178.62530 * 5 4 2 37 37 H 0.96997 * 119.99678 * 24.99569 * 8 6 5 38 38 H 1.08999 * 109.46943 * 299.99661 * 11 9 8 39 39 H 1.08993 * 109.47339 * 60.00002 * 11 9 8 40 40 H 1.08005 * 119.97811 * 0.02562 * 13 12 11 41 41 H 1.08001 * 119.98970 * 180.25549 * 14 13 12 42 42 H 1.08000 * 120.02357 * 180.02562 * 17 15 14 43 43 H 1.08998 * 109.59203 * 185.57186 * 20 6 5 44 44 H 1.09002 * 109.71127 * 65.20856 * 20 6 5 45 45 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8480 1.1699 6 6 3.9566 -1.6656 -0.0638 7 1 5.0409 -1.7694 -0.1044 8 7 3.3402 -2.9923 0.0143 9 6 3.8966 -4.0332 -0.6363 10 8 4.9073 -3.8715 -1.2869 11 6 3.2628 -5.3981 -0.5554 12 6 4.0742 -6.3774 -1.3641 13 6 3.7174 -6.6579 -2.6697 14 6 4.4632 -7.5521 -3.4140 15 6 5.5630 -8.1760 -2.8489 16 9 6.2892 -9.0536 -3.5753 17 6 5.9180 -7.8998 -1.5401 18 6 5.1732 -6.9999 -0.7972 19 9 5.5189 -6.7290 0.4804 20 6 3.4650 -0.9468 -1.3239 21 7 2.0225 -0.6995 -1.1946 22 6 1.1535 -1.1133 -2.1686 23 1 0.1397 -1.3807 -1.9098 24 6 1.5757 -1.1891 -3.4888 25 7 2.6863 -0.5880 -3.8601 26 14 0.5679 -2.1443 -4.7383 27 1 -0.4263 -1.2390 -5.3686 28 1 1.4680 -2.6952 -5.7832 29 1 -0.1391 -3.2581 -4.0567 30 1 -0.3633 0.5082 0.8933 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3634 -1.0277 -0.0064 33 1 1.6030 -1.7254 1.2911 34 1 1.7660 -0.1669 2.1367 35 1 4.0061 0.1474 1.0991 36 1 3.9378 -1.3451 2.0666 37 1 2.5317 -3.1215 0.5344 38 1 3.2324 -5.7234 0.4844 39 1 2.2485 -5.3518 -0.9515 40 1 2.8575 -6.1749 -3.1098 41 1 4.1860 -7.7675 -4.4354 42 1 6.7758 -8.3856 -1.0989 43 1 3.6517 -1.5715 -2.1973 44 1 3.9900 0.0020 -1.4343 45 1 2.9814 -0.6413 -4.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071520516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:10 Heat of formation + Delta-G solvation = -84.931517 kcal Electronic energy + Delta-G solvation = -30339.234027 eV Core-core repulsion = 25992.979730 eV Total energy + Delta-G solvation = -4346.254297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.07317 -49.01482 -39.76141 -38.73886 -37.44537 -34.09925 -32.76660 -32.68481 -30.89683 -30.61881 -29.89901 -27.41726 -26.03389 -24.92596 -23.27561 -22.38378 -22.16283 -20.66002 -20.20193 -18.73411 -18.26929 -17.29679 -16.98931 -16.35978 -16.05396 -15.89286 -15.63593 -15.32507 -15.24803 -14.81740 -14.45613 -14.39287 -14.02433 -13.93293 -13.79877 -13.40204 -13.17104 -12.99779 -12.71403 -12.53843 -12.12640 -11.96542 -11.83848 -11.63254 -11.37701 -11.22661 -11.17250 -10.97959 -10.88157 -10.72788 -10.40832 -10.34688 -9.98143 -9.56917 -9.47877 -9.37124 -9.09501 -8.62657 -8.46326 -8.34577 -6.60002 -5.76416 -3.20851 0.88318 0.97199 3.16849 3.24663 3.34083 3.40203 3.43067 3.81019 3.85157 4.35041 4.47525 4.50574 4.53132 4.77280 5.04704 5.24839 5.30488 5.34334 5.39373 5.47312 5.50114 5.51079 5.59158 5.72092 5.78143 5.90033 5.98485 6.00894 6.10907 6.15147 6.19986 6.32396 6.33876 6.43797 6.52386 6.60088 6.68571 6.71056 6.90454 7.03830 7.11952 7.39658 7.68720 7.82051 8.11195 8.48148 8.80928 9.22275 9.86891 10.44024 11.31588 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.004073 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.940183 B = 6873.044985 C = 8459.744813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.516 3.484 10 O -0.540 6.540 11 C -0.105 4.105 12 C -0.098 4.098 13 C -0.047 4.047 14 C -0.161 4.161 15 C 0.123 3.877 16 F -0.135 7.135 17 C -0.193 4.193 18 C 0.143 3.857 19 F -0.130 7.130 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.894 3.106 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -11.388 8.901 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.350 5.350 9 C 0.301 3.699 10 O -0.418 6.418 11 C -0.145 4.145 12 C -0.100 4.100 13 C -0.065 4.065 14 C -0.179 4.179 15 C 0.104 3.896 16 F -0.114 7.114 17 C -0.213 4.213 18 C 0.123 3.877 19 F -0.108 7.108 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.541 5.541 26 Si 0.724 3.276 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.811 -11.254 8.281 14.089 hybrid contribution -0.609 -0.538 -0.462 0.934 sum 1.202 -11.792 7.819 14.200 Atomic orbital electron populations 1.21788 0.96130 1.01212 1.00117 1.20464 0.92856 0.93635 0.87239 0.95849 1.22059 0.95151 1.00648 0.99049 1.21687 0.96999 1.00133 0.96835 1.21745 0.96915 0.81870 0.98125 0.90783 1.45794 1.29356 1.08552 1.51269 1.20094 0.84693 0.85569 0.79533 1.90704 1.25244 1.85059 1.40756 1.20622 1.00383 0.91994 1.01487 1.19440 0.96272 0.98583 0.95704 1.20853 0.99207 0.94669 0.91778 1.21169 0.95651 0.99435 1.01692 1.17262 0.91840 0.91245 0.89288 1.91511 1.76468 1.66395 1.77009 1.20907 1.03370 1.02820 0.94160 1.17044 0.94521 0.96502 0.79609 1.91507 1.91483 1.92530 1.35295 1.21146 0.83735 0.97004 0.94471 1.44039 1.02688 1.64818 1.19046 1.19048 0.94984 1.38031 0.86013 0.91531 1.25075 0.97711 0.99517 0.96966 1.69994 1.23901 1.43561 1.16676 0.86447 0.79429 0.80111 0.81652 1.21487 1.21601 1.20583 0.94467 0.92104 0.92950 0.92656 0.92926 0.91201 0.93062 0.77056 0.88054 0.87090 0.83701 0.84005 0.83653 0.88712 0.95810 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.95 37.16 0.30 -2.06 16 2 C 0.16 3.14 3.50 -67.60 -0.24 2.91 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.98 5.21 -26.62 -0.14 -2.12 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.22 2.81 -67.82 -0.19 2.03 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -11.84 4.91 -53.70 -0.26 -12.11 16 9 C 0.52 9.19 7.79 -10.99 -0.09 9.10 16 10 O -0.54 -11.85 15.70 5.56 0.09 -11.76 16 11 C -0.10 -1.41 5.60 -29.03 -0.16 -1.57 16 12 C -0.10 -1.38 4.38 -104.55 -0.46 -1.83 16 13 C -0.05 -0.62 9.67 -39.60 -0.38 -1.00 16 14 C -0.16 -1.96 10.03 -39.50 -0.40 -2.35 16 15 C 0.12 1.55 7.30 -39.43 -0.29 1.26 16 16 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 17 C -0.19 -2.42 10.01 -39.45 -0.39 -2.81 16 18 C 0.14 1.98 7.24 -39.43 -0.29 1.69 16 19 F -0.13 -1.84 16.57 2.25 0.04 -1.80 16 20 C 0.16 3.80 4.88 -3.72 -0.02 3.78 16 21 N -0.58 -13.40 2.90 -164.79 -0.48 -13.87 16 22 C -0.25 -6.38 8.58 -15.06 -0.13 -6.51 16 23 H 0.07 1.65 6.23 -52.49 -0.33 1.32 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 25 N -0.90 -25.85 11.23 55.49 0.62 -25.23 16 26 Si 0.89 21.09 29.58 -169.99 -5.03 16.06 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.17 7.67 -51.93 -0.40 0.78 16 32 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.05 0.82 6.40 -51.93 -0.33 0.48 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.39 5.82 6.77 -40.82 -0.28 5.55 16 38 H 0.10 1.11 7.79 -51.93 -0.40 0.70 16 39 H 0.11 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.09 2.61 6.15 -51.93 -0.32 2.29 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -31.01 370.32 -8.70 -39.71 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.19 Total: 6.44 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.11 Total: -1.37 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.12 Total: -51.21 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.01 -8.70 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071520516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.221 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds