Wall clock time and date at job start Tue Mar 31 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.59128 * 2 1 4 4 C 1.53193 * 109.58782 * 239.71629 * 2 1 3 5 5 C 1.53042 * 109.31579 * 185.57985 * 4 2 1 6 6 C 1.53037 * 109.53534 * 61.36958 * 5 4 2 7 7 H 1.08999 * 109.49770 * 178.64979 * 6 5 4 8 8 N 1.46498 * 109.50084 * 58.58612 * 6 5 4 9 9 C 1.34772 * 120.00224 * 155.06379 * 8 6 5 10 10 O 1.21279 * 119.99877 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00241 * 179.97438 * 9 8 6 12 12 C 1.50693 * 109.47451 * 179.97438 * 11 9 8 13 13 C 1.38420 * 120.02510 * 89.99893 * 12 11 9 14 14 F 1.35104 * 120.01027 * 359.96272 * 13 12 11 15 15 C 1.38471 * 119.97671 * 179.97438 * 13 12 11 16 16 C 1.38207 * 120.02594 * 0.02562 * 15 13 12 17 17 C 1.38211 * 120.05016 * 0.27607 * 16 15 13 18 18 C 1.38418 * 120.02951 * 269.98337 * 12 11 9 19 19 F 1.35107 * 120.00827 * 359.97438 * 18 12 11 20 20 C 1.53195 * 109.33940 * 298.61649 * 6 5 4 21 21 N 1.46925 * 109.58447 * 120.43249 * 2 1 3 22 22 C 1.36935 * 120.63021 * 353.41728 * 21 2 1 23 23 H 1.08001 * 120.00560 * 41.13822 * 22 21 2 24 24 C 1.38819 * 119.99827 * 221.14479 * 22 21 2 25 25 N 1.31617 * 119.99544 * 214.85730 * 24 22 21 26 26 Si 1.86800 * 120.00287 * 34.85216 * 24 22 21 27 27 H 1.48500 * 109.46920 * 84.62933 * 26 24 22 28 28 H 1.48493 * 109.47533 * 204.63174 * 26 24 22 29 29 H 1.48501 * 109.46977 * 324.63424 * 26 24 22 30 30 H 1.08993 * 109.47344 * 180.27656 * 1 2 3 31 31 H 1.09001 * 109.46963 * 300.28575 * 1 2 3 32 32 H 1.09005 * 109.46433 * 60.27822 * 1 2 3 33 33 H 1.09002 * 109.49501 * 65.63239 * 4 2 1 34 34 H 1.09001 * 109.50231 * 305.54008 * 4 2 1 35 35 H 1.08994 * 109.45715 * 301.34559 * 5 4 2 36 36 H 1.09000 * 109.45799 * 181.38405 * 5 4 2 37 37 H 0.97002 * 120.00017 * 335.06335 * 8 6 5 38 38 H 1.09005 * 109.46668 * 59.99762 * 11 9 8 39 39 H 1.08996 * 109.47073 * 300.00711 * 11 9 8 40 40 H 1.08004 * 119.99067 * 180.02562 * 15 13 12 41 41 H 1.07996 * 119.97868 * 179.97438 * 16 15 13 42 42 H 1.07999 * 119.99223 * 179.70524 * 17 16 15 43 43 H 1.09000 * 109.58798 * 174.43515 * 20 6 5 44 44 H 1.08996 * 109.58763 * 294.86496 * 20 6 5 45 45 H 0.97012 * 119.99534 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9568 -1.6660 0.0613 7 1 5.0410 -1.7705 0.1011 8 7 3.3404 -2.9925 -0.0187 9 6 3.8961 -4.0342 0.6313 10 8 4.9062 -3.8732 1.2829 11 6 3.2616 -5.3987 0.5495 12 6 4.0723 -6.3790 1.3575 13 6 3.7829 -6.5797 2.6961 14 9 2.7738 -5.8962 3.2792 15 6 4.5281 -7.4810 3.4375 16 6 5.5609 -8.1798 2.8415 17 6 5.8548 -7.9756 1.5066 18 6 5.1067 -7.0796 0.7616 19 9 5.3898 -6.8853 -0.5451 20 6 3.4656 -0.9492 1.3229 21 7 2.0225 -0.7012 1.1935 22 6 1.1535 -1.1164 2.1670 23 1 0.2053 -1.5550 1.8933 24 6 1.4913 -0.9734 3.5059 25 7 1.1098 -1.8793 4.3811 26 14 2.4876 0.5044 4.0652 27 1 1.5766 1.6509 4.3116 28 1 3.2107 0.1686 5.3179 29 1 3.4675 0.8687 3.0105 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3632 0.5095 -0.8925 33 1 1.7661 -0.1640 -2.1370 34 1 1.6029 -1.7236 -1.2937 35 1 4.0061 0.1486 -1.0991 36 1 3.9377 -1.3423 -2.0686 37 1 2.5322 -3.1212 -0.5395 38 1 3.2310 -5.7233 -0.4907 39 1 2.2472 -5.3521 0.9454 40 1 4.3022 -7.6381 4.4819 41 1 6.1418 -8.8823 3.4206 42 1 6.6651 -8.5186 1.0430 43 1 3.6527 -1.5754 2.1953 44 1 3.9910 -0.0004 1.4321 45 1 1.3462 -1.7796 5.3167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071772751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:12 Heat of formation + Delta-G solvation = -79.863264 kcal Electronic energy + Delta-G solvation = -30807.608591 eV Core-core repulsion = 26461.574069 eV Total energy + Delta-G solvation = -4346.034521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.99719 -48.70325 -39.72206 -38.71693 -37.57785 -34.15822 -32.94103 -32.64636 -30.75743 -30.65361 -30.25731 -27.70349 -26.18650 -24.78625 -22.82335 -22.60823 -22.32080 -20.66574 -20.20602 -18.87502 -18.05785 -17.28240 -17.03974 -16.48021 -16.02109 -15.68732 -15.47581 -15.30553 -15.08549 -15.07150 -14.44962 -14.30753 -14.27471 -13.76004 -13.56404 -13.43805 -13.27554 -12.87479 -12.69597 -12.60201 -12.20756 -12.10358 -11.90678 -11.72523 -11.49516 -11.34248 -11.31094 -11.18860 -10.90152 -10.59952 -10.43507 -10.23405 -9.89283 -9.77954 -9.52203 -9.40457 -8.81004 -8.69728 -8.52109 -8.21615 -6.63426 -6.02145 -3.32096 0.97111 1.01765 3.14547 3.30552 3.45482 3.55820 3.59694 3.79843 3.96260 4.45934 4.46475 4.63970 4.66268 4.79039 4.94588 5.12361 5.19319 5.25944 5.36301 5.38780 5.41337 5.48862 5.56181 5.81070 5.86680 5.91193 5.95789 6.01202 6.06758 6.07336 6.12577 6.20741 6.30065 6.35419 6.37760 6.50844 6.55209 6.60908 6.78498 6.96569 7.02945 7.10588 7.14794 8.03744 8.09726 8.46581 8.75954 9.05198 9.78567 10.27084 11.12817 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.004416 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.073606 B = 6338.492143 C = 7600.974234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.127 3.873 7 H 0.077 0.923 8 N -0.699 5.699 9 C 0.523 3.477 10 O -0.544 6.544 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.149 3.851 14 F -0.114 7.114 15 C -0.167 4.167 16 C -0.065 4.065 17 C -0.170 4.170 18 C 0.138 3.862 19 F -0.132 7.132 20 C 0.134 3.866 21 N -0.590 5.590 22 C -0.274 4.274 23 H 0.075 0.925 24 C 0.054 3.946 25 N -0.874 5.874 26 Si 0.840 3.160 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.262 1.262 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.397 0.603 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -10.555 -9.907 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.020 3.980 7 H 0.095 0.905 8 N -0.350 5.350 9 C 0.309 3.691 10 O -0.422 6.422 11 C -0.144 4.144 12 C -0.134 4.134 13 C 0.130 3.870 14 F -0.092 7.092 15 C -0.186 4.186 16 C -0.084 4.084 17 C -0.189 4.189 18 C 0.119 3.881 19 F -0.111 7.111 20 C 0.007 3.993 21 N -0.314 5.314 22 C -0.402 4.402 23 H 0.092 0.908 24 C -0.150 4.150 25 N -0.512 5.512 26 Si 0.667 3.333 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.187 1.187 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.232 0.768 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.570 -10.454 -9.284 15.448 hybrid contribution 0.000 1.085 0.230 1.109 sum 6.570 -9.369 -9.054 14.592 Atomic orbital electron populations 1.21747 0.95462 1.01679 1.00101 1.20582 0.93501 0.93325 0.86971 0.95712 1.22045 0.94915 1.00959 0.99004 1.21683 0.97202 1.00005 0.96754 1.21520 0.96979 0.82139 0.97314 0.90513 1.45737 1.29547 1.08197 1.51504 1.20057 0.84383 0.85597 0.79088 1.90672 1.25484 1.85200 1.40826 1.20505 1.00757 0.91738 1.01409 1.19325 0.99304 1.00689 0.94035 1.17277 0.87476 0.92333 0.89941 1.91662 1.56544 1.77371 1.83625 1.21212 0.97656 0.98410 1.01281 1.20779 0.95803 0.98068 0.93712 1.21082 1.01818 1.00873 0.95124 1.17132 0.95179 0.97210 0.78607 1.91495 1.92623 1.94094 1.32844 1.21704 0.85340 0.96581 0.95656 1.44312 1.02003 1.64997 1.20124 1.18467 1.02098 1.35420 0.84229 0.90798 1.25573 0.96576 0.96770 0.96045 1.70085 1.46813 1.31043 1.03289 0.87402 0.80729 0.86970 0.78162 1.21678 1.22505 1.18696 0.92637 0.91913 0.94473 0.92630 0.92325 0.91148 0.92605 0.76763 0.87806 0.86757 0.84014 0.84174 0.84308 0.90924 0.95220 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.07 37.16 0.30 -2.05 16 2 C 0.16 3.02 3.50 -67.60 -0.24 2.79 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.95 5.20 -26.61 -0.14 -2.08 16 5 C -0.12 -1.74 5.59 -26.69 -0.15 -1.89 16 6 C 0.13 2.29 2.81 -67.81 -0.19 2.10 16 7 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.70 -12.18 4.92 -53.69 -0.26 -12.44 16 9 C 0.52 9.85 7.79 -10.99 -0.09 9.77 16 10 O -0.54 -12.20 15.70 5.56 0.09 -12.11 16 11 C -0.10 -1.60 5.48 -29.04 -0.16 -1.76 16 12 C -0.13 -2.04 4.38 -104.49 -0.46 -2.50 16 13 C 0.15 2.40 7.24 -39.43 -0.29 2.11 16 14 F -0.11 -2.19 16.48 2.25 0.04 -2.15 16 15 C -0.17 -2.10 10.02 -39.51 -0.40 -2.50 16 16 C -0.07 -0.67 10.04 -39.60 -0.40 -1.07 16 17 C -0.17 -1.90 10.03 -39.50 -0.40 -2.29 16 18 C 0.14 1.92 7.24 -39.43 -0.29 1.63 16 19 F -0.13 -1.84 16.48 2.25 0.04 -1.80 16 20 C 0.13 2.97 4.20 -3.67 -0.02 2.96 16 21 N -0.59 -13.34 2.39 -164.72 -0.39 -13.73 16 22 C -0.27 -7.29 8.44 -15.06 -0.13 -7.42 16 23 H 0.07 2.10 6.81 -52.49 -0.36 1.74 16 24 C 0.05 1.53 4.82 -17.43 -0.08 1.44 16 25 N -0.87 -26.43 13.97 55.49 0.78 -25.65 16 26 Si 0.84 21.95 27.39 -169.99 -4.66 17.30 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 29 H -0.26 -6.61 5.24 56.52 0.30 -6.32 16 30 H 0.05 1.02 7.38 -51.93 -0.38 0.64 16 31 H 0.06 1.24 7.71 -51.93 -0.40 0.84 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 6.14 6.77 -40.82 -0.28 5.86 16 38 H 0.10 1.28 7.64 -51.93 -0.40 0.88 16 39 H 0.11 1.76 7.64 -51.93 -0.40 1.36 16 40 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.07 1.90 7.02 -51.93 -0.36 1.54 16 44 H 0.03 0.67 6.71 -51.93 -0.35 0.32 16 45 H 0.26 7.65 8.31 -40.81 -0.34 7.31 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -33.02 366.47 -8.23 -41.25 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.27 Total: 4.60 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.10 Total: -0.77 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.12 Total: -51.83 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.66 Total: 17.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.02 -8.23 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.614 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds