Wall clock time and date at job start Tue Mar 31 2020 21:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.59128 * 2 1 4 4 C 1.53193 * 109.58782 * 239.71629 * 2 1 3 5 5 C 1.53042 * 109.31579 * 185.57985 * 4 2 1 6 6 C 1.53037 * 109.53534 * 61.36958 * 5 4 2 7 7 H 1.08999 * 109.49770 * 178.64979 * 6 5 4 8 8 N 1.46498 * 109.50084 * 58.58612 * 6 5 4 9 9 C 1.34772 * 120.00224 * 155.06379 * 8 6 5 10 10 O 1.21279 * 119.99877 * 0.02562 * 9 8 6 11 11 C 1.50705 * 120.00241 * 179.97438 * 9 8 6 12 12 C 1.50693 * 109.47451 * 179.97438 * 11 9 8 13 13 C 1.38420 * 120.02510 * 89.99893 * 12 11 9 14 14 F 1.35104 * 120.01027 * 359.96272 * 13 12 11 15 15 C 1.38471 * 119.97671 * 179.97438 * 13 12 11 16 16 C 1.38207 * 120.02594 * 0.02562 * 15 13 12 17 17 C 1.38211 * 120.05016 * 0.27607 * 16 15 13 18 18 C 1.38418 * 120.02951 * 269.98337 * 12 11 9 19 19 F 1.35107 * 120.00827 * 359.97438 * 18 12 11 20 20 C 1.53195 * 109.33940 * 298.61649 * 6 5 4 21 21 N 1.46925 * 109.58447 * 120.43249 * 2 1 3 22 22 C 1.36935 * 120.63021 * 353.41728 * 21 2 1 23 23 H 1.08001 * 120.00560 * 41.13822 * 22 21 2 24 24 C 1.38819 * 119.99827 * 221.14479 * 22 21 2 25 25 N 1.31617 * 119.99544 * 214.85730 * 24 22 21 26 26 Si 1.86800 * 120.00287 * 34.85216 * 24 22 21 27 27 H 1.48500 * 109.46920 * 84.62933 * 26 24 22 28 28 H 1.48493 * 109.47533 * 204.63174 * 26 24 22 29 29 H 1.48501 * 109.46977 * 324.63424 * 26 24 22 30 30 H 1.08993 * 109.47344 * 180.27656 * 1 2 3 31 31 H 1.09001 * 109.46963 * 300.28575 * 1 2 3 32 32 H 1.09005 * 109.46433 * 60.27822 * 1 2 3 33 33 H 1.09002 * 109.49501 * 65.63239 * 4 2 1 34 34 H 1.09001 * 109.50231 * 305.54008 * 4 2 1 35 35 H 1.08994 * 109.45715 * 301.34559 * 5 4 2 36 36 H 1.09000 * 109.45799 * 181.38405 * 5 4 2 37 37 H 0.97002 * 120.00017 * 335.06335 * 8 6 5 38 38 H 1.09005 * 109.46668 * 59.99762 * 11 9 8 39 39 H 1.08996 * 109.47073 * 300.00711 * 11 9 8 40 40 H 1.08004 * 119.99067 * 180.02562 * 15 13 12 41 41 H 1.07996 * 119.97868 * 179.97438 * 16 15 13 42 42 H 1.07999 * 119.99223 * 179.70524 * 17 16 15 43 43 H 1.09000 * 109.58798 * 174.43515 * 20 6 5 44 44 H 1.08996 * 109.58763 * 294.86496 * 20 6 5 45 45 H 0.97012 * 119.99534 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9568 -1.6660 0.0613 7 1 5.0410 -1.7705 0.1011 8 7 3.3404 -2.9925 -0.0187 9 6 3.8961 -4.0342 0.6313 10 8 4.9062 -3.8732 1.2829 11 6 3.2616 -5.3987 0.5495 12 6 4.0723 -6.3790 1.3575 13 6 3.7829 -6.5797 2.6961 14 9 2.7738 -5.8962 3.2792 15 6 4.5281 -7.4810 3.4375 16 6 5.5609 -8.1798 2.8415 17 6 5.8548 -7.9756 1.5066 18 6 5.1067 -7.0796 0.7616 19 9 5.3898 -6.8853 -0.5451 20 6 3.4656 -0.9492 1.3229 21 7 2.0225 -0.7012 1.1935 22 6 1.1535 -1.1164 2.1670 23 1 0.2053 -1.5550 1.8933 24 6 1.4913 -0.9734 3.5059 25 7 1.1098 -1.8793 4.3811 26 14 2.4876 0.5044 4.0652 27 1 1.5766 1.6509 4.3116 28 1 3.2107 0.1686 5.3179 29 1 3.4675 0.8687 3.0105 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5183 0.8874 32 1 -0.3632 0.5095 -0.8925 33 1 1.7661 -0.1640 -2.1370 34 1 1.6029 -1.7236 -1.2937 35 1 4.0061 0.1486 -1.0991 36 1 3.9377 -1.3423 -2.0686 37 1 2.5322 -3.1212 -0.5395 38 1 3.2310 -5.7233 -0.4907 39 1 2.2472 -5.3521 0.9454 40 1 4.3022 -7.6381 4.4819 41 1 6.1418 -8.8823 3.4206 42 1 6.6651 -8.5186 1.0430 43 1 3.6527 -1.5754 2.1953 44 1 3.9910 -0.0004 1.4321 45 1 1.3462 -1.7796 5.3167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:12 Heat of formation + Delta-G solvation = -100.579903 kcal Electronic energy + Delta-G solvation = -30808.506932 eV Core-core repulsion = 26461.574069 eV Total energy + Delta-G solvation = -4346.932862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.03878 -50.01616 -41.17200 -39.86654 -39.05059 -35.81062 -34.48270 -34.10463 -32.51711 -32.17652 -31.25063 -28.89609 -27.80373 -26.51955 -24.17513 -23.86040 -23.57596 -22.11056 -21.66452 -20.51678 -19.14801 -18.49267 -18.40168 -18.28272 -17.28191 -17.03103 -16.79914 -16.60983 -16.53811 -16.30275 -16.13974 -15.80683 -15.43837 -15.41954 -15.00680 -14.86657 -14.60212 -14.41349 -14.30830 -13.84129 -13.74215 -13.47087 -13.34254 -12.97068 -12.93502 -12.73044 -12.61389 -12.59453 -12.47521 -12.34881 -12.16019 -11.81383 -11.61410 -11.37349 -11.16183 -10.96993 -10.50587 -9.96673 -9.87928 -9.73550 -8.55498 -8.24242 -5.47119 -0.03562 -0.00789 1.31320 1.37419 1.43982 1.67033 2.21072 2.46766 2.53040 2.92404 2.95341 3.36063 3.44016 3.44238 3.65285 3.85360 3.89543 4.02187 4.06400 4.14561 4.22279 4.34220 4.37194 4.42280 4.60421 4.64286 4.73371 4.82102 4.83368 4.88276 5.00780 5.01660 5.02976 5.06910 5.09204 5.11805 5.19307 5.24067 5.29294 5.56242 5.63449 5.66963 5.79611 5.95474 6.29302 6.62646 7.04994 7.31774 7.70498 8.20999 8.94955 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.004416 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.073606 B = 6338.492143 C = 7600.974234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.032 0.968 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.072 0.928 8 N -0.693 5.693 9 C 0.514 3.486 10 O -0.585 6.585 11 C -0.098 4.098 12 C -0.153 4.153 13 C 0.105 3.895 14 F -0.147 7.147 15 C -0.167 4.167 16 C -0.050 4.050 17 C -0.157 4.157 18 C 0.123 3.877 19 F -0.135 7.135 20 C 0.136 3.864 21 N -0.599 5.599 22 C -0.242 4.242 23 H 0.051 0.949 24 C -0.002 4.002 25 N -0.922 5.922 26 Si 0.888 3.112 27 H -0.289 1.289 28 H -0.313 1.313 29 H -0.249 1.249 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.408 0.592 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.157 0.843 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.022 0.978 44 H 0.029 0.971 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -11.059 -12.980 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.049 0.951 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.025 3.975 7 H 0.090 0.910 8 N -0.344 5.344 9 C 0.301 3.699 10 O -0.466 6.466 11 C -0.138 4.138 12 C -0.155 4.155 13 C 0.086 3.914 14 F -0.125 7.125 15 C -0.186 4.186 16 C -0.067 4.067 17 C -0.176 4.176 18 C 0.103 3.897 19 F -0.113 7.113 20 C 0.010 3.990 21 N -0.324 5.324 22 C -0.371 4.371 23 H 0.069 0.931 24 C -0.201 4.201 25 N -0.565 5.565 26 Si 0.716 3.284 27 H -0.216 1.216 28 H -0.241 1.241 29 H -0.173 1.173 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.245 0.755 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.175 0.825 41 H 0.205 0.795 42 H 0.192 0.808 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.131 -10.924 -12.427 18.435 hybrid contribution -0.466 1.184 1.122 1.696 sum 7.665 -9.739 -11.305 16.775 Atomic orbital electron populations 1.21690 0.94911 1.01062 1.00747 1.20901 0.94100 0.93690 0.86549 0.95075 1.21959 0.94826 1.01084 0.98079 1.21670 0.97099 1.00126 0.95762 1.21410 0.96666 0.82453 0.97013 0.90972 1.45740 1.29749 1.07813 1.51073 1.20700 0.83950 0.87000 0.78201 1.90635 1.27473 1.86015 1.42479 1.20482 0.99894 0.90068 1.03348 1.19436 1.00487 1.01489 0.94115 1.17799 0.88379 0.94288 0.90927 1.91572 1.58234 1.78539 1.84200 1.21562 0.97552 0.97488 1.01987 1.21319 0.94485 0.97326 0.93614 1.21576 1.01436 0.99307 0.95240 1.17365 0.95411 0.98050 0.78834 1.91481 1.92601 1.94243 1.32982 1.21563 0.85267 0.96063 0.96146 1.44425 1.01625 1.65764 1.20546 1.18396 1.01253 1.32683 0.84808 0.93119 1.26058 0.98615 0.98705 0.96693 1.70187 1.50164 1.32863 1.03272 0.86614 0.79750 0.84540 0.77471 1.21581 1.24069 1.17303 0.93847 0.94752 0.90378 0.88774 0.92151 0.90023 0.89358 0.75499 0.84709 0.87658 0.82491 0.79524 0.80780 0.95900 0.95338 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 8.07 71.98 0.58 -3.69 16 2 C 0.15 5.31 3.50 44.97 0.16 5.47 16 3 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.12 -3.11 5.20 30.67 0.16 -2.95 16 5 C -0.11 -2.77 5.59 30.62 0.17 -2.60 16 6 C 0.13 4.59 2.81 45.07 0.13 4.72 16 7 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 8 N -0.69 -23.84 4.92 -442.17 -2.17 -26.02 16 9 C 0.51 19.82 7.79 87.66 0.68 20.51 16 10 O -0.59 -27.22 15.70 -3.03 -0.05 -27.27 16 11 C -0.10 -3.10 5.48 29.10 0.16 -2.95 16 12 C -0.15 -4.86 4.38 -19.78 -0.09 -4.95 16 13 C 0.11 3.53 7.24 22.37 0.16 3.69 16 14 F -0.15 -6.15 16.48 44.97 0.74 -5.41 16 15 C -0.17 -4.11 10.02 22.32 0.22 -3.89 16 16 C -0.05 -0.87 10.04 22.26 0.22 -0.65 16 17 C -0.16 -3.03 10.03 22.32 0.22 -2.81 16 18 C 0.12 3.27 7.24 22.37 0.16 3.43 16 19 F -0.13 -3.55 16.48 44.97 0.74 -2.81 16 20 C 0.14 6.10 4.20 86.35 0.36 6.46 16 21 N -0.60 -27.01 2.39 -675.04 -1.61 -28.62 16 22 C -0.24 -13.26 8.44 84.04 0.71 -12.55 16 23 H 0.05 3.00 6.81 -2.91 -0.02 2.98 16 24 C 0.00 -0.12 4.82 84.86 0.41 0.29 16 25 N -0.92 -59.03 13.97 21.65 0.30 -58.73 16 26 Si 0.89 47.08 27.39 68.60 1.88 48.96 16 27 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.31 -17.22 7.11 99.48 0.71 -16.51 16 29 H -0.25 -12.44 5.24 99.48 0.52 -11.91 16 30 H 0.04 1.55 7.38 -2.39 -0.02 1.53 16 31 H 0.03 1.33 7.71 -2.39 -0.02 1.31 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.56 6.40 -2.39 -0.02 1.55 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 12.09 6.77 -92.71 -0.63 11.46 16 38 H 0.13 3.24 7.64 -2.38 -0.02 3.22 16 39 H 0.11 3.46 7.64 -2.39 -0.02 3.44 16 40 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 41 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.02 1.23 7.02 -2.39 -0.02 1.22 16 44 H 0.03 1.28 6.71 -2.39 -0.02 1.27 16 45 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -78.47 366.47 4.47 -74.00 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.21 Total: 18.35 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.43 Total: 7.55 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.48 Total: -113.37 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.48 Total: -8.22 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.96 kcal Total: -78.47 4.47 -74.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.577 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds