Wall clock time and date at job start Tue Mar 31 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.58658 * 2 1 4 4 C 1.53191 * 109.58780 * 120.42625 * 2 1 3 5 5 C 1.53031 * 109.31615 * 174.42087 * 4 2 1 6 6 C 1.53042 * 109.54044 * 298.63694 * 5 4 2 7 7 H 1.09003 * 109.50018 * 181.31135 * 6 5 4 8 8 N 1.46501 * 109.49903 * 301.37892 * 6 5 4 9 9 C 1.34772 * 120.00242 * 204.99735 * 8 6 5 10 10 O 1.21277 * 119.99876 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00102 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47236 * 179.97438 * 11 9 8 13 13 C 1.38414 * 120.02738 * 269.72972 * 12 11 9 14 14 F 1.35103 * 120.01364 * 359.97185 * 13 12 11 15 15 C 1.38472 * 119.97633 * 179.74884 * 13 12 11 16 16 C 1.38209 * 120.02362 * 0.49847 * 15 13 12 17 17 C 1.38213 * 120.04758 * 359.77636 * 16 15 13 18 18 C 1.38418 * 120.02352 * 90.00029 * 12 11 9 19 19 F 1.35101 * 120.01396 * 359.97438 * 18 12 11 20 20 C 1.53192 * 109.31074 * 61.36151 * 6 5 4 21 21 N 1.46917 * 108.77811 * 305.36753 * 20 6 5 22 22 C 1.36938 * 120.63400 * 233.88500 * 21 20 6 23 23 H 1.07997 * 120.00593 * 149.89861 * 22 21 20 24 24 C 1.38815 * 119.99680 * 329.89319 * 22 21 20 25 25 N 1.31621 * 119.99984 * 344.62101 * 24 22 21 26 26 Si 1.86800 * 120.00122 * 164.61780 * 24 22 21 27 27 H 1.48504 * 109.46788 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47041 * 119.99977 * 26 24 22 29 29 H 1.48497 * 109.47258 * 240.00106 * 26 24 22 30 30 H 1.08997 * 109.47370 * 180.28081 * 1 2 3 31 31 H 1.08998 * 109.47319 * 300.28619 * 1 2 3 32 32 H 1.09009 * 109.46926 * 60.28290 * 1 2 3 33 33 H 1.09000 * 109.49775 * 294.37978 * 4 2 1 34 34 H 1.09001 * 109.49428 * 54.46823 * 4 2 1 35 35 H 1.09003 * 109.45919 * 58.65679 * 5 4 2 36 36 H 1.08996 * 109.46485 * 178.63064 * 5 4 2 37 37 H 0.97000 * 119.99568 * 25.00322 * 8 6 5 38 38 H 1.08994 * 109.47141 * 300.00610 * 11 9 8 39 39 H 1.09003 * 109.46794 * 60.00198 * 11 9 8 40 40 H 1.07996 * 119.98890 * 180.27908 * 15 13 12 41 41 H 1.07997 * 119.97834 * 179.75246 * 16 15 13 42 42 H 1.07998 * 119.98258 * 179.97438 * 17 16 15 43 43 H 1.09007 * 109.58749 * 185.57825 * 20 6 5 44 44 H 1.09000 * 109.58710 * 65.15422 * 20 6 5 45 45 H 0.97002 * 120.00123 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 1.2445 5 6 3.5674 -0.8495 1.1691 6 6 3.9568 -1.6657 -0.0655 7 1 5.0412 -1.7695 -0.1059 8 7 3.3411 -2.9928 0.0114 9 6 3.8979 -4.0328 -0.6402 10 8 4.9089 -3.8702 -1.2900 11 6 3.2648 -5.3981 -0.5606 12 6 4.0758 -6.3759 -1.3712 13 6 3.7820 -6.5784 -2.7086 14 9 2.7675 -5.8999 -3.2879 15 6 4.5312 -7.4734 -3.4537 16 6 5.5655 -8.1719 -2.8600 17 6 5.8561 -7.9747 -1.5232 18 6 5.1116 -7.0764 -0.7775 19 9 5.3963 -6.8834 0.5290 20 6 3.4650 -0.9453 -1.3249 21 7 2.0226 -0.6981 -1.1953 22 6 1.1530 -1.1153 -2.1675 23 1 0.1406 -1.3861 -1.9065 24 6 1.5729 -1.1902 -3.4885 25 7 2.6818 -0.5873 -3.8618 26 14 0.5642 -2.1465 -4.7364 27 1 -0.6290 -2.7261 -4.0686 28 1 0.1279 -1.2342 -5.8239 29 1 1.3913 -3.2390 -5.3087 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7659 -0.1695 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 4.0060 0.1460 1.0995 36 1 3.9377 -1.3476 2.0650 37 1 2.5326 -3.1228 0.5313 38 1 3.2344 -5.7244 0.4789 39 1 2.2504 -5.3518 -0.9567 40 1 4.3051 -7.6282 -4.4983 41 1 6.1468 -8.8726 -3.4408 42 1 6.6643 -8.5214 -1.0602 43 1 3.6518 -1.5690 -2.1991 44 1 3.9902 0.0038 -1.4316 45 1 2.9750 -0.6393 -4.7850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071772752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:15 Heat of formation + Delta-G solvation = -82.841202 kcal Electronic energy + Delta-G solvation = -30902.571740 eV Core-core repulsion = 26556.408085 eV Total energy + Delta-G solvation = -4346.163654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.02025 -48.83206 -39.64863 -38.69886 -37.45862 -34.07359 -32.95896 -32.68770 -30.68826 -30.30936 -29.86090 -27.69531 -26.03665 -24.89431 -22.87978 -22.54112 -22.13446 -20.63107 -20.17340 -18.70267 -18.12364 -17.33942 -17.02214 -16.32924 -16.03758 -15.68743 -15.54759 -15.32591 -15.16693 -14.89141 -14.40857 -14.34601 -13.94857 -13.84763 -13.56617 -13.33757 -13.09162 -12.85656 -12.76085 -12.48312 -12.26558 -11.97373 -11.86247 -11.50786 -11.36722 -11.19448 -11.13470 -10.92022 -10.83887 -10.67877 -10.35308 -10.28269 -9.92625 -9.54093 -9.44700 -9.36670 -8.83316 -8.75353 -8.40780 -8.31660 -6.55105 -5.71064 -3.15689 0.93352 0.96551 3.19135 3.27480 3.42056 3.48795 3.51534 3.85126 3.91456 4.40697 4.42317 4.54423 4.62346 4.74339 5.08172 5.26961 5.34039 5.36578 5.40458 5.49730 5.49956 5.53940 5.63007 5.77430 5.86947 5.90044 6.01606 6.03882 6.08026 6.13832 6.17944 6.35022 6.37272 6.46722 6.55118 6.63082 6.71640 6.74122 6.93517 7.07601 7.15261 7.42964 7.72968 7.87984 8.13530 8.53477 8.83105 9.27684 9.92308 10.48714 11.36960 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.004831 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.022155 B = 5794.192921 C = 7433.098837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.519 3.481 10 O -0.541 6.541 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.146 3.854 14 F -0.121 7.121 15 C -0.165 4.165 16 C -0.065 4.065 17 C -0.168 4.168 18 C 0.139 3.861 19 F -0.131 7.131 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.898 5.898 26 Si 0.892 3.108 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -13.020 8.626 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.304 3.696 10 O -0.418 6.418 11 C -0.146 4.146 12 C -0.131 4.131 13 C 0.126 3.874 14 F -0.099 7.099 15 C -0.184 4.184 16 C -0.084 4.084 17 C -0.187 4.187 18 C 0.120 3.880 19 F -0.109 7.109 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.380 4.380 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.722 3.278 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.723 -12.818 8.017 15.570 hybrid contribution -0.997 -0.275 -0.432 1.121 sum 2.726 -13.092 7.585 15.374 Atomic orbital electron populations 1.21791 0.96144 1.01166 1.00162 1.20458 0.92864 0.93627 0.87195 0.95821 1.22063 0.95147 1.00656 0.99074 1.21683 0.97013 1.00121 0.96793 1.21770 0.96897 0.81830 0.98203 0.90792 1.45777 1.29344 1.08548 1.51235 1.20015 0.84640 0.85492 0.79476 1.90688 1.25296 1.85031 1.40795 1.20533 1.00518 0.92095 1.01428 1.19325 0.99230 1.00583 0.93996 1.17243 0.87400 0.92662 0.90051 1.91603 1.56505 1.77895 1.83937 1.21192 0.97564 0.98492 1.01186 1.20782 0.95778 0.98069 0.93721 1.21101 1.01797 1.00713 0.95061 1.17119 0.95130 0.97090 0.78680 1.91499 1.92561 1.94089 1.32784 1.21156 0.83795 0.96931 0.94496 1.44028 1.02638 1.64805 1.19095 1.19085 0.95096 1.37846 0.86010 0.91505 1.25056 0.97704 0.99332 0.96992 1.69999 1.24080 1.43574 1.16504 0.86391 0.79708 0.79895 0.81843 1.20315 1.21849 1.21344 0.92999 0.94483 0.92042 0.92914 0.92679 0.91176 0.93074 0.77058 0.87729 0.87107 0.84067 0.84099 0.84207 0.88705 0.95793 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.95 37.15 0.30 -2.15 16 2 C 0.17 3.26 3.50 -67.60 -0.24 3.03 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.21 -26.62 -0.14 -2.21 16 5 C -0.12 -1.89 5.58 -26.69 -0.15 -2.03 16 6 C 0.12 2.31 2.81 -67.81 -0.19 2.11 16 7 H 0.07 1.50 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -12.64 4.92 -53.69 -0.26 -12.90 16 9 C 0.52 9.98 7.79 -10.99 -0.09 9.90 16 10 O -0.54 -12.51 15.70 5.56 0.09 -12.42 16 11 C -0.11 -1.62 5.48 -29.04 -0.16 -1.78 16 12 C -0.13 -2.00 4.38 -104.49 -0.46 -2.46 16 13 C 0.15 2.31 7.24 -39.43 -0.29 2.03 16 14 F -0.12 -2.25 16.47 2.25 0.04 -2.21 16 15 C -0.17 -2.06 10.03 -39.51 -0.40 -2.46 16 16 C -0.07 -0.66 10.04 -39.60 -0.40 -1.06 16 17 C -0.17 -1.86 10.02 -39.51 -0.40 -2.26 16 18 C 0.14 1.93 7.24 -39.43 -0.29 1.64 16 19 F -0.13 -1.83 16.48 2.25 0.04 -1.79 16 20 C 0.16 3.94 4.89 -3.72 -0.02 3.92 16 21 N -0.58 -13.92 2.90 -164.78 -0.48 -14.39 16 22 C -0.25 -6.65 8.56 -15.06 -0.13 -6.78 16 23 H 0.07 1.74 6.24 -52.49 -0.33 1.41 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 25 N -0.90 -26.75 11.24 55.49 0.62 -26.13 16 26 Si 0.89 22.35 29.58 -169.99 -5.03 17.32 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 30 H 0.05 0.94 7.43 -51.93 -0.39 0.55 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.23 7.64 -51.92 -0.40 0.83 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.85 6.40 -51.93 -0.33 0.52 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.39 6.28 6.77 -40.82 -0.28 6.00 16 38 H 0.10 1.28 7.64 -51.93 -0.40 0.89 16 39 H 0.11 1.64 7.63 -51.93 -0.40 1.24 16 40 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.09 2.72 6.15 -51.93 -0.32 2.40 16 44 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.95 369.09 -8.70 -41.65 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.16 Total: 5.72 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.12 Total: -0.41 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.12 Total: -53.42 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.95 -8.70 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.190 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds