Wall clock time and date at job start Tue Mar 31 2020 21:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.58658 * 2 1 4 4 C 1.53191 * 109.58780 * 120.42625 * 2 1 3 5 5 C 1.53031 * 109.31615 * 174.42087 * 4 2 1 6 6 C 1.53042 * 109.54044 * 298.63694 * 5 4 2 7 7 H 1.09003 * 109.50018 * 181.31135 * 6 5 4 8 8 N 1.46501 * 109.49903 * 301.37892 * 6 5 4 9 9 C 1.34772 * 120.00242 * 204.99735 * 8 6 5 10 10 O 1.21277 * 119.99876 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00102 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.47236 * 179.97438 * 11 9 8 13 13 C 1.38414 * 120.02738 * 269.72972 * 12 11 9 14 14 F 1.35103 * 120.01364 * 359.97185 * 13 12 11 15 15 C 1.38472 * 119.97633 * 179.74884 * 13 12 11 16 16 C 1.38209 * 120.02362 * 0.49847 * 15 13 12 17 17 C 1.38213 * 120.04758 * 359.77636 * 16 15 13 18 18 C 1.38418 * 120.02352 * 90.00029 * 12 11 9 19 19 F 1.35101 * 120.01396 * 359.97438 * 18 12 11 20 20 C 1.53192 * 109.31074 * 61.36151 * 6 5 4 21 21 N 1.46917 * 108.77811 * 305.36753 * 20 6 5 22 22 C 1.36938 * 120.63400 * 233.88500 * 21 20 6 23 23 H 1.07997 * 120.00593 * 149.89861 * 22 21 20 24 24 C 1.38815 * 119.99680 * 329.89319 * 22 21 20 25 25 N 1.31621 * 119.99984 * 344.62101 * 24 22 21 26 26 Si 1.86800 * 120.00122 * 164.61780 * 24 22 21 27 27 H 1.48504 * 109.46788 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47041 * 119.99977 * 26 24 22 29 29 H 1.48497 * 109.47258 * 240.00106 * 26 24 22 30 30 H 1.08997 * 109.47370 * 180.28081 * 1 2 3 31 31 H 1.08998 * 109.47319 * 300.28619 * 1 2 3 32 32 H 1.09009 * 109.46926 * 60.28290 * 1 2 3 33 33 H 1.09000 * 109.49775 * 294.37978 * 4 2 1 34 34 H 1.09001 * 109.49428 * 54.46823 * 4 2 1 35 35 H 1.09003 * 109.45919 * 58.65679 * 5 4 2 36 36 H 1.08996 * 109.46485 * 178.63064 * 5 4 2 37 37 H 0.97000 * 119.99568 * 25.00322 * 8 6 5 38 38 H 1.08994 * 109.47141 * 300.00610 * 11 9 8 39 39 H 1.09003 * 109.46794 * 60.00198 * 11 9 8 40 40 H 1.07996 * 119.98890 * 180.27908 * 15 13 12 41 41 H 1.07997 * 119.97834 * 179.75246 * 16 15 13 42 42 H 1.07998 * 119.98258 * 179.97438 * 17 16 15 43 43 H 1.09007 * 109.58749 * 185.57825 * 20 6 5 44 44 H 1.09000 * 109.58710 * 65.15422 * 20 6 5 45 45 H 0.97002 * 120.00123 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 1.2445 5 6 3.5674 -0.8495 1.1691 6 6 3.9568 -1.6657 -0.0655 7 1 5.0412 -1.7695 -0.1059 8 7 3.3411 -2.9928 0.0114 9 6 3.8979 -4.0328 -0.6402 10 8 4.9089 -3.8702 -1.2900 11 6 3.2648 -5.3981 -0.5606 12 6 4.0758 -6.3759 -1.3712 13 6 3.7820 -6.5784 -2.7086 14 9 2.7675 -5.8999 -3.2879 15 6 4.5312 -7.4734 -3.4537 16 6 5.5655 -8.1719 -2.8600 17 6 5.8561 -7.9747 -1.5232 18 6 5.1116 -7.0764 -0.7775 19 9 5.3963 -6.8834 0.5290 20 6 3.4650 -0.9453 -1.3249 21 7 2.0226 -0.6981 -1.1953 22 6 1.1530 -1.1153 -2.1675 23 1 0.1406 -1.3861 -1.9065 24 6 1.5729 -1.1902 -3.4885 25 7 2.6818 -0.5873 -3.8618 26 14 0.5642 -2.1465 -4.7364 27 1 -0.6290 -2.7261 -4.0686 28 1 0.1279 -1.2342 -5.8239 29 1 1.3913 -3.2390 -5.3087 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7659 -0.1695 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 4.0060 0.1460 1.0995 36 1 3.9377 -1.3476 2.0650 37 1 2.5326 -3.1228 0.5313 38 1 3.2344 -5.7244 0.4789 39 1 2.2504 -5.3518 -0.9567 40 1 4.3051 -7.6282 -4.4983 41 1 6.1468 -8.8726 -3.4408 42 1 6.6643 -8.5214 -1.0602 43 1 3.6518 -1.5690 -2.1991 44 1 3.9902 0.0038 -1.4316 45 1 2.9750 -0.6393 -4.7850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:15 Heat of formation + Delta-G solvation = -103.111783 kcal Electronic energy + Delta-G solvation = -30903.450738 eV Core-core repulsion = 26556.408085 eV Total energy + Delta-G solvation = -4347.042653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.09433 -50.05321 -41.12869 -39.84929 -39.00179 -35.78340 -34.51087 -34.11999 -32.18261 -31.74458 -31.28212 -28.88935 -27.73880 -26.66813 -23.96516 -23.89570 -23.60268 -22.15784 -21.65269 -20.38716 -19.19420 -18.48512 -18.43337 -18.13262 -17.32521 -16.98934 -16.84715 -16.64161 -16.38871 -16.33815 -16.02183 -15.69545 -15.50188 -15.45500 -14.95319 -14.70689 -14.60660 -14.43847 -13.98578 -13.79085 -13.72762 -13.34640 -13.00277 -12.96831 -12.88707 -12.65460 -12.62920 -12.53405 -12.44775 -12.34198 -12.12090 -12.06032 -11.58407 -11.23061 -11.07121 -10.95465 -10.54697 -9.95822 -9.89641 -9.76579 -8.57482 -7.83582 -5.28915 -0.05899 -0.03684 1.36849 1.42181 1.48273 1.69397 2.20284 2.48401 2.53182 2.89362 3.32890 3.34067 3.40617 3.62539 3.63219 3.85852 3.91459 4.06389 4.10192 4.18447 4.20037 4.34283 4.37771 4.49335 4.64357 4.73050 4.80643 4.82366 4.84332 4.95770 5.00798 5.03464 5.04086 5.09133 5.11262 5.16893 5.26601 5.32196 5.57149 5.61155 5.69181 5.72817 5.74502 5.76927 6.43579 6.66515 7.17976 7.35984 7.92360 8.43244 9.21794 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.004831 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.022155 B = 5794.192921 C = 7433.098837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.128 3.872 7 H 0.061 0.939 8 N -0.690 5.690 9 C 0.510 3.490 10 O -0.586 6.586 11 C -0.098 4.098 12 C -0.152 4.152 13 C 0.104 3.896 14 F -0.149 7.149 15 C -0.167 4.167 16 C -0.050 4.050 17 C -0.156 4.156 18 C 0.123 3.877 19 F -0.134 7.134 20 C 0.173 3.827 21 N -0.594 5.594 22 C -0.233 4.233 23 H 0.077 0.923 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.943 3.057 27 H -0.258 1.258 28 H -0.293 1.293 29 H -0.304 1.304 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.408 0.592 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.188 0.812 42 H 0.174 0.826 43 H 0.043 0.957 44 H -0.006 1.006 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -15.047 11.292 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.022 3.978 7 H 0.079 0.921 8 N -0.341 5.341 9 C 0.297 3.703 10 O -0.467 6.467 11 C -0.138 4.138 12 C -0.154 4.154 13 C 0.085 3.915 14 F -0.128 7.128 15 C -0.185 4.185 16 C -0.068 4.068 17 C -0.175 4.175 18 C 0.103 3.897 19 F -0.113 7.113 20 C 0.046 3.954 21 N -0.318 5.318 22 C -0.364 4.364 23 H 0.094 0.906 24 C -0.248 4.248 25 N -0.584 5.584 26 Si 0.773 3.227 27 H -0.182 1.182 28 H -0.221 1.221 29 H -0.232 1.232 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.245 0.755 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.176 0.824 41 H 0.205 0.795 42 H 0.192 0.808 43 H 0.062 0.938 44 H 0.012 0.988 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.286 -14.847 10.748 18.621 hybrid contribution -0.826 0.363 -1.230 1.525 sum 2.459 -14.485 9.518 17.506 Atomic orbital electron populations 1.21721 0.94627 1.01386 1.00794 1.20783 0.94224 0.93168 0.87006 0.96961 1.21953 0.94577 1.01147 0.98054 1.21653 0.97413 0.99778 0.95870 1.21465 0.96124 0.82587 0.97641 0.92092 1.45706 1.29658 1.07786 1.50971 1.20773 0.84116 0.87034 0.78346 1.90656 1.27512 1.85947 1.42596 1.20514 1.00020 0.89772 1.03483 1.19446 1.00424 1.01400 0.94176 1.17746 0.88294 0.94507 0.90943 1.91520 1.57958 1.78913 1.84417 1.21558 0.97452 0.97602 1.01937 1.21322 0.94519 0.97344 0.93600 1.21585 1.01430 0.99247 0.95232 1.17378 0.95433 0.97999 0.78883 1.91483 1.92562 1.94251 1.33001 1.20811 0.84318 0.95064 0.95180 1.44242 1.02080 1.65483 1.19982 1.19424 0.95461 1.35261 0.86260 0.90560 1.25718 0.98907 1.01149 0.98981 1.70167 1.26136 1.46100 1.15953 0.85548 0.78895 0.78215 0.80075 1.18209 1.22070 1.23209 0.92922 0.90561 0.94722 0.89088 0.91670 0.91029 0.89571 0.75480 0.84579 0.87090 0.82435 0.79524 0.80813 0.93813 0.98793 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.95 71.98 0.57 -3.76 16 2 C 0.15 5.82 3.50 44.97 0.16 5.98 16 3 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 4 C -0.12 -3.33 5.21 30.67 0.16 -3.17 16 5 C -0.11 -3.20 5.58 30.62 0.17 -3.03 16 6 C 0.13 5.01 2.81 45.07 0.13 5.13 16 7 H 0.06 2.54 7.58 -2.39 -0.02 2.53 16 8 N -0.69 -24.72 4.92 -442.17 -2.17 -26.89 16 9 C 0.51 20.03 7.79 87.66 0.68 20.71 16 10 O -0.59 -28.38 15.70 -3.02 -0.05 -28.43 16 11 C -0.10 -3.01 5.48 29.10 0.16 -2.85 16 12 C -0.15 -4.74 4.38 -19.78 -0.09 -4.83 16 13 C 0.10 3.38 7.24 22.37 0.16 3.54 16 14 F -0.15 -5.87 16.47 44.97 0.74 -5.13 16 15 C -0.17 -3.98 10.03 22.32 0.22 -3.76 16 16 C -0.05 -0.86 10.04 22.26 0.22 -0.64 16 17 C -0.16 -3.00 10.02 22.32 0.22 -2.78 16 18 C 0.12 3.24 7.24 22.37 0.16 3.40 16 19 F -0.13 -3.57 16.48 44.97 0.74 -2.83 16 20 C 0.17 8.79 4.89 86.36 0.42 9.21 16 21 N -0.59 -28.79 2.90 -675.24 -1.96 -30.75 16 22 C -0.23 -12.59 8.56 84.03 0.72 -11.87 16 23 H 0.08 3.93 6.24 -2.91 -0.02 3.91 16 24 C -0.05 -3.07 4.94 84.86 0.42 -2.66 16 25 N -0.94 -59.19 11.24 21.65 0.24 -58.95 16 26 Si 0.94 47.70 29.58 68.60 2.03 49.73 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 30 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.33 7.64 -2.38 -0.02 1.32 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.74 6.40 -2.39 -0.02 1.72 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.41 12.21 6.77 -92.71 -0.63 11.58 16 38 H 0.14 3.16 7.64 -2.39 -0.02 3.14 16 39 H 0.11 3.34 7.63 -2.39 -0.02 3.32 16 40 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 41 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.04 2.67 6.15 -2.38 -0.01 2.66 16 44 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -78.80 369.09 4.47 -74.33 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.40 Total: 20.27 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.50 Total: 8.64 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.89 Total: -116.59 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 9 Polarization: -9.43 SS G_CDS: 1.48 Total: -7.95 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -78.80 4.47 -74.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.781 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds