Wall clock time and date at job start Tue Mar 31 2020 21:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.59005 * 2 1 4 4 C 1.53190 * 109.58897 * 120.28732 * 2 1 3 5 5 C 1.53039 * 109.31520 * 174.41990 * 4 2 1 6 6 C 1.53044 * 109.53724 * 298.63292 * 5 4 2 7 7 H 1.08996 * 109.49893 * 301.38627 * 6 5 4 8 8 N 1.46496 * 109.49833 * 181.31578 * 6 5 4 9 9 C 1.34781 * 120.00093 * 155.06733 * 8 6 5 10 10 O 1.21276 * 119.99870 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00048 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.47005 * 179.97438 * 11 9 8 13 13 C 1.38421 * 120.02871 * 269.72344 * 12 11 9 14 14 F 1.35099 * 120.00909 * 0.02562 * 13 12 11 15 15 C 1.38475 * 119.97282 * 179.75079 * 13 12 11 16 16 C 1.38204 * 120.02473 * 0.52689 * 15 13 12 17 17 C 1.38211 * 120.05249 * 359.75029 * 16 15 13 18 18 C 1.38421 * 120.02324 * 90.00268 * 12 11 9 19 19 F 1.35103 * 120.01329 * 0.02562 * 18 12 11 20 20 C 1.53198 * 109.33693 * 61.34732 * 6 5 4 21 21 N 1.46929 * 108.77350 * 305.41261 * 20 6 5 22 22 C 1.36933 * 120.60586 * 233.57854 * 21 20 6 23 23 H 1.07998 * 120.00022 * 150.14097 * 22 21 20 24 24 C 1.38814 * 120.00015 * 330.13625 * 22 21 20 25 25 N 1.31618 * 120.00102 * 344.50215 * 24 22 21 26 26 Si 1.86799 * 119.99973 * 164.49400 * 24 22 21 27 27 H 1.48500 * 109.46945 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47116 * 120.00217 * 26 24 22 29 29 H 1.48496 * 109.47101 * 240.00533 * 26 24 22 30 30 H 1.09005 * 109.46747 * 299.71856 * 1 2 3 31 31 H 1.08998 * 109.46968 * 59.71184 * 1 2 3 32 32 H 1.08996 * 109.47625 * 179.71645 * 1 2 3 33 33 H 1.09004 * 109.49581 * 54.46808 * 4 2 1 34 34 H 1.09004 * 109.52345 * 294.38494 * 4 2 1 35 35 H 1.08994 * 109.46377 * 178.61482 * 5 4 2 36 36 H 1.08995 * 109.44829 * 58.64688 * 5 4 2 37 37 H 0.97005 * 119.99899 * 335.06198 * 8 6 5 38 38 H 1.09008 * 109.46816 * 59.99866 * 11 9 8 39 39 H 1.09003 * 109.47382 * 300.00195 * 11 9 8 40 40 H 1.08004 * 119.98320 * 180.27778 * 15 13 12 41 41 H 1.07999 * 119.97285 * 179.72475 * 16 15 13 42 42 H 1.07995 * 119.98497 * 179.97438 * 17 16 15 43 43 H 1.09007 * 109.58236 * 65.16981 * 20 6 5 44 44 H 1.08999 * 109.58658 * 185.59099 * 20 6 5 45 45 H 0.96994 * 120.00289 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5675 -0.8466 1.1711 6 6 3.9568 -1.6659 -0.0615 7 1 3.4986 -2.6531 -0.0019 8 7 5.4141 -1.8056 -0.1155 9 6 5.9676 -2.8486 -0.7655 10 8 5.2591 -3.6716 -1.3054 11 6 7.4667 -2.9920 -0.8215 12 6 7.8239 -4.2316 -1.6004 13 6 7.9701 -5.4427 -0.9462 14 9 7.7919 -5.5141 0.3911 15 6 8.2933 -6.5820 -1.6638 16 6 8.4807 -6.5081 -3.0311 17 6 8.3407 -5.2984 -3.6846 18 6 8.0119 -4.1589 -2.9699 19 9 7.8756 -2.9763 -3.6088 20 6 3.4648 -0.9494 -1.3231 21 7 2.0224 -0.7011 -1.1937 22 6 1.1536 -1.1158 -2.1674 23 1 0.1396 -1.3827 -1.9083 24 6 1.5759 -1.1931 -3.4875 25 7 2.6866 -0.5927 -3.8593 26 14 0.5681 -2.1496 -4.7360 27 1 -0.6272 -2.7263 -4.0699 28 1 0.1356 -1.2381 -5.8256 29 1 1.3946 -3.2442 -5.3051 30 1 -0.3633 0.5095 0.8926 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6029 -1.7238 1.2934 34 1 1.7661 -0.1647 2.1373 35 1 3.9378 -1.3424 2.0683 36 1 4.0059 0.1487 1.0989 37 1 5.9808 -1.1475 0.3166 38 1 7.8619 -3.0731 0.1912 39 1 7.8973 -2.1183 -1.3107 40 1 8.4030 -7.5279 -1.1542 41 1 8.7372 -7.3964 -3.5893 42 1 8.4877 -5.2418 -4.7530 43 1 3.9902 -0.0005 -1.4327 44 1 3.6515 -1.5757 -2.1954 45 1 2.9819 -0.6470 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071772753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:18 Heat of formation + Delta-G solvation = -84.835108 kcal Electronic energy + Delta-G solvation = -30140.070683 eV Core-core repulsion = 25793.820567 eV Total energy + Delta-G solvation = -4346.250117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.08805 -48.96739 -39.69934 -38.70354 -37.51901 -34.36897 -33.07312 -32.76599 -30.70711 -30.38700 -29.82209 -27.86565 -25.81581 -24.84476 -22.96902 -22.57267 -22.16561 -20.65977 -19.95288 -19.19344 -18.21588 -17.43737 -16.93992 -16.48126 -16.16284 -15.76428 -15.64019 -15.46755 -15.27596 -14.95378 -14.49992 -14.45588 -13.88573 -13.76947 -13.67523 -13.36813 -13.30278 -12.85015 -12.79573 -12.37114 -12.32150 -12.05777 -11.84588 -11.70860 -11.45265 -11.36406 -11.09070 -10.85521 -10.68976 -10.48747 -10.35989 -10.21710 -9.92824 -9.75010 -9.44705 -9.41065 -8.91478 -8.83230 -8.49188 -8.37961 -6.56528 -5.70151 -3.15011 0.85179 0.88891 3.03752 3.17006 3.44304 3.52293 3.53493 3.65495 3.82725 4.30631 4.31965 4.53247 4.57188 4.66515 5.01245 5.09680 5.26596 5.33492 5.37880 5.40650 5.53120 5.60540 5.66868 5.72807 5.78102 5.81387 5.92045 6.00256 6.01543 6.13707 6.29985 6.33799 6.42135 6.48377 6.53804 6.64757 6.66016 6.78160 6.98589 7.07615 7.15859 7.36036 7.78023 7.89551 7.95789 8.54355 8.67085 9.28713 9.93008 10.48598 11.38004 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003865 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.785831 B = 7243.572199 C = 8721.907330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.513 3.487 10 O -0.525 6.525 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.140 3.860 14 F -0.130 7.130 15 C -0.166 4.166 16 C -0.064 4.064 17 C -0.164 4.164 18 C 0.146 3.854 19 F -0.124 7.124 20 C 0.169 3.831 21 N -0.584 5.584 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.017 0.983 44 H 0.092 0.908 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.320 -6.692 7.796 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.370 5.370 9 C 0.298 3.702 10 O -0.400 6.400 11 C -0.145 4.145 12 C -0.134 4.134 13 C 0.120 3.880 14 F -0.109 7.109 15 C -0.185 4.185 16 C -0.082 4.082 17 C -0.183 4.183 18 C 0.126 3.874 19 F -0.102 7.102 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.035 0.965 44 H 0.111 0.889 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.811 -7.229 7.256 17.195 hybrid contribution -0.170 0.113 -0.401 0.450 sum 13.641 -7.116 6.855 16.844 Atomic orbital electron populations 1.21799 0.96015 1.01418 1.00137 1.20482 0.93061 0.93520 0.87070 0.95791 1.22049 0.94327 1.01310 0.98911 1.21673 0.97398 0.99615 0.96706 1.21988 0.77761 1.00825 0.98254 0.90115 1.46026 1.08631 1.26584 1.55793 1.20153 0.89318 0.81815 0.78911 1.90758 1.63174 1.41941 1.44168 1.20542 0.95209 0.96647 1.02057 1.19296 1.05755 0.95228 0.93165 1.17130 0.99950 0.93315 0.77567 1.91506 1.92647 1.96884 1.29826 1.21130 1.04601 0.97760 0.95023 1.20806 0.96768 0.97372 0.93282 1.21193 1.04193 0.91627 1.01302 1.17191 0.99144 0.81978 0.89080 1.91563 1.92873 1.44394 1.81397 1.21059 0.83553 0.96838 0.94302 1.44028 1.02653 1.64650 1.19379 1.19167 0.95076 1.38034 0.85998 0.91226 1.25083 0.97778 0.99295 0.97044 1.70008 1.24045 1.43647 1.16595 0.86287 0.79639 0.79738 0.81513 1.20206 1.21780 1.21533 0.94369 0.92019 0.92796 0.92111 0.92699 0.93109 0.92282 0.77467 0.87509 0.87224 0.84114 0.84013 0.83970 0.96542 0.88935 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.95 37.16 0.30 -2.31 16 2 C 0.17 3.45 3.50 -67.60 -0.24 3.21 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 5 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16 6 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 7 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 8 N -0.72 -11.97 5.08 -53.69 -0.27 -12.24 16 9 C 0.51 9.25 7.79 -10.98 -0.09 9.16 16 10 O -0.53 -12.08 15.70 5.56 0.09 -11.99 16 11 C -0.10 -1.40 5.48 -29.04 -0.16 -1.56 16 12 C -0.13 -1.87 4.38 -104.49 -0.46 -2.33 16 13 C 0.14 1.83 7.24 -39.43 -0.29 1.55 16 14 F -0.13 -1.74 16.47 2.25 0.04 -1.71 16 15 C -0.17 -1.75 10.02 -39.51 -0.40 -2.14 16 16 C -0.06 -0.61 10.04 -39.60 -0.40 -1.01 16 17 C -0.16 -1.87 10.02 -39.51 -0.40 -2.26 16 18 C 0.15 2.07 7.24 -39.43 -0.29 1.79 16 19 F -0.12 -1.97 16.48 2.25 0.04 -1.93 16 20 C 0.17 4.19 4.86 -3.71 -0.02 4.18 16 21 N -0.58 -14.84 2.99 -164.77 -0.49 -15.33 16 22 C -0.25 -7.07 8.58 -15.06 -0.13 -7.20 16 23 H 0.07 1.90 6.23 -52.49 -0.33 1.57 16 24 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 25 N -0.90 -27.17 11.23 55.49 0.62 -26.55 16 26 Si 0.90 22.82 29.58 -169.99 -5.03 17.80 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 32 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.39 5.00 8.60 -40.82 -0.35 4.65 16 38 H 0.11 1.13 7.63 -51.92 -0.40 0.73 16 39 H 0.11 1.29 7.64 -51.93 -0.40 0.89 16 40 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.72 6.15 -51.93 -0.32 2.40 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -34.55 372.60 -8.82 -43.38 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.33 Total: 4.01 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.10 Total: -1.04 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.14 Total: -54.12 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.64 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.55 -8.82 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.460 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds