Wall clock time and date at job start Tue Mar 31 2020 21:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.59005 * 2 1 4 4 C 1.53190 * 109.58897 * 120.28732 * 2 1 3 5 5 C 1.53039 * 109.31520 * 174.41990 * 4 2 1 6 6 C 1.53044 * 109.53724 * 298.63292 * 5 4 2 7 7 H 1.08996 * 109.49893 * 301.38627 * 6 5 4 8 8 N 1.46496 * 109.49833 * 181.31578 * 6 5 4 9 9 C 1.34781 * 120.00093 * 155.06733 * 8 6 5 10 10 O 1.21276 * 119.99870 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00048 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.47005 * 179.97438 * 11 9 8 13 13 C 1.38421 * 120.02871 * 269.72344 * 12 11 9 14 14 F 1.35099 * 120.00909 * 0.02562 * 13 12 11 15 15 C 1.38475 * 119.97282 * 179.75079 * 13 12 11 16 16 C 1.38204 * 120.02473 * 0.52689 * 15 13 12 17 17 C 1.38211 * 120.05249 * 359.75029 * 16 15 13 18 18 C 1.38421 * 120.02324 * 90.00268 * 12 11 9 19 19 F 1.35103 * 120.01329 * 0.02562 * 18 12 11 20 20 C 1.53198 * 109.33693 * 61.34732 * 6 5 4 21 21 N 1.46929 * 108.77350 * 305.41261 * 20 6 5 22 22 C 1.36933 * 120.60586 * 233.57854 * 21 20 6 23 23 H 1.07998 * 120.00022 * 150.14097 * 22 21 20 24 24 C 1.38814 * 120.00015 * 330.13625 * 22 21 20 25 25 N 1.31618 * 120.00102 * 344.50215 * 24 22 21 26 26 Si 1.86799 * 119.99973 * 164.49400 * 24 22 21 27 27 H 1.48500 * 109.46945 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47116 * 120.00217 * 26 24 22 29 29 H 1.48496 * 109.47101 * 240.00533 * 26 24 22 30 30 H 1.09005 * 109.46747 * 299.71856 * 1 2 3 31 31 H 1.08998 * 109.46968 * 59.71184 * 1 2 3 32 32 H 1.08996 * 109.47625 * 179.71645 * 1 2 3 33 33 H 1.09004 * 109.49581 * 54.46808 * 4 2 1 34 34 H 1.09004 * 109.52345 * 294.38494 * 4 2 1 35 35 H 1.08994 * 109.46377 * 178.61482 * 5 4 2 36 36 H 1.08995 * 109.44829 * 58.64688 * 5 4 2 37 37 H 0.97005 * 119.99899 * 335.06198 * 8 6 5 38 38 H 1.09008 * 109.46816 * 59.99866 * 11 9 8 39 39 H 1.09003 * 109.47382 * 300.00195 * 11 9 8 40 40 H 1.08004 * 119.98320 * 180.27778 * 15 13 12 41 41 H 1.07999 * 119.97285 * 179.72475 * 16 15 13 42 42 H 1.07995 * 119.98497 * 179.97438 * 17 16 15 43 43 H 1.09007 * 109.58236 * 65.16981 * 20 6 5 44 44 H 1.08999 * 109.58658 * 185.59099 * 20 6 5 45 45 H 0.96994 * 120.00289 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5675 -0.8466 1.1711 6 6 3.9568 -1.6659 -0.0615 7 1 3.4986 -2.6531 -0.0019 8 7 5.4141 -1.8056 -0.1155 9 6 5.9676 -2.8486 -0.7655 10 8 5.2591 -3.6716 -1.3054 11 6 7.4667 -2.9920 -0.8215 12 6 7.8239 -4.2316 -1.6004 13 6 7.9701 -5.4427 -0.9462 14 9 7.7919 -5.5141 0.3911 15 6 8.2933 -6.5820 -1.6638 16 6 8.4807 -6.5081 -3.0311 17 6 8.3407 -5.2984 -3.6846 18 6 8.0119 -4.1589 -2.9699 19 9 7.8756 -2.9763 -3.6088 20 6 3.4648 -0.9494 -1.3231 21 7 2.0224 -0.7011 -1.1937 22 6 1.1536 -1.1158 -2.1674 23 1 0.1396 -1.3827 -1.9083 24 6 1.5759 -1.1931 -3.4875 25 7 2.6866 -0.5927 -3.8593 26 14 0.5681 -2.1496 -4.7360 27 1 -0.6272 -2.7263 -4.0699 28 1 0.1356 -1.2381 -5.8256 29 1 1.3946 -3.2442 -5.3051 30 1 -0.3633 0.5095 0.8926 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6029 -1.7238 1.2934 34 1 1.7661 -0.1647 2.1373 35 1 3.9378 -1.3424 2.0683 36 1 4.0059 0.1487 1.0989 37 1 5.9808 -1.1475 0.3166 38 1 7.8619 -3.0731 0.1912 39 1 7.8973 -2.1183 -1.3107 40 1 8.4030 -7.5279 -1.1542 41 1 8.7372 -7.3964 -3.5893 42 1 8.4877 -5.2418 -4.7530 43 1 3.9902 -0.0005 -1.4327 44 1 3.6515 -1.5757 -2.1954 45 1 2.9819 -0.6470 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:17 Heat of formation + Delta-G solvation = -106.972802 kcal Electronic energy + Delta-G solvation = -30141.030646 eV Core-core repulsion = 25793.820567 eV Total energy + Delta-G solvation = -4347.210079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.08359 -50.06574 -41.10496 -39.80950 -39.09495 -36.02401 -34.67804 -34.13952 -32.22998 -31.75006 -31.28327 -29.00255 -27.61998 -26.57870 -24.11396 -23.90559 -23.48650 -22.18547 -21.47470 -20.86175 -19.20040 -18.46495 -18.35460 -18.24407 -17.53814 -17.02622 -16.86987 -16.63886 -16.44182 -16.34460 -16.06242 -15.69590 -15.48504 -15.42994 -15.04852 -14.90306 -14.54555 -14.46087 -14.12383 -13.79025 -13.56440 -13.40816 -13.10580 -12.96564 -12.79569 -12.74096 -12.63647 -12.56262 -12.36530 -12.29910 -12.12723 -11.99532 -11.68179 -11.44184 -11.16358 -10.95925 -10.57124 -10.09540 -9.90982 -9.76451 -8.64045 -7.87587 -5.34234 -0.06766 -0.03605 1.37225 1.41526 1.49811 1.61975 2.11198 2.43393 2.50444 2.88726 3.29026 3.31515 3.39901 3.62659 3.63938 3.84913 3.88910 4.01284 4.07753 4.20066 4.25101 4.33890 4.35105 4.39309 4.59624 4.69644 4.77384 4.81965 4.82918 4.87941 4.99351 5.00643 5.02933 5.05270 5.17057 5.17318 5.28904 5.32012 5.46448 5.53338 5.59495 5.68616 5.76436 5.77990 6.39142 6.59312 7.13596 7.30597 7.87944 8.37434 9.17619 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003865 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.785831 B = 7243.572199 C = 8721.907330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.048 0.952 8 N -0.708 5.708 9 C 0.507 3.493 10 O -0.582 6.582 11 C -0.095 4.095 12 C -0.155 4.155 13 C 0.120 3.880 14 F -0.136 7.136 15 C -0.160 4.160 16 C -0.052 4.052 17 C -0.166 4.166 18 C 0.109 3.891 19 F -0.145 7.145 20 C 0.182 3.818 21 N -0.604 5.604 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.933 5.933 26 Si 0.954 3.046 27 H -0.261 1.261 28 H -0.286 1.286 29 H -0.302 1.302 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.161 0.839 43 H -0.003 1.003 44 H 0.038 0.962 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.924 -7.651 10.044 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.066 0.934 8 N -0.360 5.360 9 C 0.294 3.706 10 O -0.461 6.461 11 C -0.135 4.135 12 C -0.157 4.157 13 C 0.101 3.899 14 F -0.114 7.114 15 C -0.178 4.178 16 C -0.070 4.070 17 C -0.185 4.185 18 C 0.090 3.910 19 F -0.123 7.123 20 C 0.055 3.945 21 N -0.328 5.328 22 C -0.381 4.381 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.783 3.217 27 H -0.185 1.185 28 H -0.213 1.213 29 H -0.229 1.229 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.189 0.811 41 H 0.203 0.797 42 H 0.178 0.822 43 H 0.015 0.985 44 H 0.057 0.943 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.425 -8.152 9.565 19.131 hybrid contribution -0.351 0.389 -1.076 1.197 sum 14.073 -7.763 8.489 18.177 Atomic orbital electron populations 1.21732 0.94735 1.01103 1.01091 1.20810 0.94324 0.93361 0.86700 0.96020 1.21956 0.94605 1.00836 0.98346 1.21644 0.97088 0.99966 0.95769 1.21504 0.79361 0.98934 0.97692 0.93402 1.45867 1.07677 1.26957 1.55480 1.21021 0.91188 0.80976 0.77452 1.90723 1.64935 1.44056 1.46410 1.20544 0.91398 0.97392 1.04125 1.19459 1.06804 0.96019 0.93446 1.17418 1.01016 0.93907 0.77607 1.91483 1.92852 1.96918 1.30164 1.21583 1.02685 0.98025 0.95528 1.21322 0.94651 0.97923 0.93077 1.21574 1.03178 0.91415 1.02343 1.17649 1.01356 0.82321 0.89688 1.91502 1.93367 1.45687 1.81754 1.20729 0.83810 0.95128 0.94852 1.44336 1.02534 1.65575 1.20374 1.19509 0.95526 1.36462 0.86618 0.90773 1.25815 0.99098 1.00914 0.99020 1.70167 1.25873 1.45686 1.16247 0.85384 0.78600 0.78133 0.79557 1.18545 1.21301 1.22918 0.90168 0.94341 0.93636 0.93054 0.88471 0.89571 0.90735 0.74838 0.84346 0.85873 0.81132 0.79739 0.82160 0.98494 0.94347 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16 2 C 0.15 6.22 3.50 44.97 0.16 6.38 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 5 C -0.11 -3.22 5.35 30.62 0.16 -3.06 16 6 C 0.13 5.28 2.60 45.07 0.12 5.40 16 7 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 8 N -0.71 -23.55 5.08 -442.16 -2.25 -25.80 16 9 C 0.51 18.76 7.79 87.66 0.68 19.45 16 10 O -0.58 -28.24 15.70 -3.02 -0.05 -28.28 16 11 C -0.10 -2.55 5.48 29.10 0.16 -2.39 16 12 C -0.16 -4.44 4.38 -19.78 -0.09 -4.53 16 13 C 0.12 3.05 7.24 22.37 0.16 3.21 16 14 F -0.14 -3.51 16.47 44.97 0.74 -2.77 16 15 C -0.16 -3.00 10.02 22.32 0.22 -2.77 16 16 C -0.05 -0.85 10.04 22.26 0.22 -0.63 16 17 C -0.17 -3.64 10.02 22.32 0.22 -3.41 16 18 C 0.11 3.19 7.24 22.37 0.16 3.36 16 19 F -0.14 -4.88 16.48 44.97 0.74 -4.14 16 20 C 0.18 9.41 4.86 86.36 0.42 9.83 16 21 N -0.60 -31.45 2.99 -675.20 -2.02 -33.47 16 22 C -0.25 -14.41 8.58 84.03 0.72 -13.69 16 23 H 0.07 4.11 6.23 -2.91 -0.02 4.09 16 24 C -0.05 -3.20 4.94 84.86 0.42 -2.78 16 25 N -0.93 -59.51 11.23 21.65 0.24 -59.27 16 26 Si 0.95 48.64 29.58 68.60 2.03 50.67 16 27 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 30 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 32 H 0.04 1.72 7.40 -2.39 -0.02 1.71 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.41 9.96 8.60 -92.70 -0.80 9.17 16 38 H 0.14 2.72 7.63 -2.38 -0.02 2.71 16 39 H 0.12 2.91 7.64 -2.39 -0.02 2.89 16 40 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.04 2.40 6.15 -2.39 -0.01 2.38 16 45 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.54 372.60 4.15 -78.39 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.22 Total: 18.07 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 4.49 Total: 6.59 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -4.02 Total: -118.53 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.28 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 1.48 Total: -6.91 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -82.54 4.15 -78.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.585 kcal (2) G-P(sol) polarization free energy of solvation -82.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds