Wall clock time and date at job start Tue Mar 31 2020 21:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58475 * 2 1 4 4 C 1.53194 * 109.70134 * 239.64742 * 2 1 3 5 5 C 1.53034 * 109.33941 * 185.52385 * 4 2 1 6 6 C 1.53039 * 109.54172 * 61.31569 * 5 4 2 7 7 H 1.09004 * 109.49488 * 58.64779 * 6 5 4 8 8 N 1.46495 * 109.50203 * 178.71840 * 6 5 4 9 9 C 1.34779 * 120.00281 * 204.93616 * 8 6 5 10 10 O 1.21285 * 119.99802 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00155 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.46936 * 180.02562 * 11 9 8 13 13 C 1.38416 * 120.02503 * 269.72548 * 12 11 9 14 14 F 1.35100 * 120.01266 * 359.97438 * 13 12 11 15 15 C 1.38474 * 119.97200 * 179.74704 * 13 12 11 16 16 C 1.38204 * 120.02729 * 0.50814 * 15 13 12 17 17 C 1.38204 * 120.04833 * 359.76814 * 16 15 13 18 18 C 1.38419 * 120.02549 * 90.00263 * 12 11 9 19 19 F 1.35101 * 120.00975 * 359.97438 * 18 12 11 20 20 C 1.53196 * 109.33990 * 298.68759 * 6 5 4 21 21 N 1.46922 * 108.77481 * 54.61236 * 20 6 5 22 22 C 1.36937 * 120.62865 * 126.41459 * 21 20 6 23 23 H 1.08005 * 120.00388 * 209.01416 * 22 21 20 24 24 C 1.38810 * 120.00147 * 29.02332 * 22 21 20 25 25 N 1.31624 * 120.00111 * 15.00378 * 24 22 21 26 26 Si 1.86801 * 120.00405 * 195.01003 * 24 22 21 27 27 H 1.48501 * 109.47157 * 59.99310 * 26 24 22 28 28 H 1.48501 * 109.47362 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46951 * 300.00094 * 26 24 22 30 30 H 1.09001 * 109.46886 * 299.71377 * 1 2 3 31 31 H 1.08995 * 109.46970 * 59.71526 * 1 2 3 32 32 H 1.09006 * 109.47130 * 179.71432 * 1 2 3 33 33 H 1.08998 * 109.49744 * 305.45729 * 4 2 1 34 34 H 1.08998 * 109.49714 * 65.52590 * 4 2 1 35 35 H 1.09003 * 109.43120 * 301.31455 * 5 4 2 36 36 H 1.08999 * 109.48623 * 181.35650 * 5 4 2 37 37 H 0.96999 * 120.00184 * 24.93121 * 8 6 5 38 38 H 1.09004 * 109.47155 * 299.99764 * 11 9 8 39 39 H 1.08993 * 109.46851 * 60.00239 * 11 9 8 40 40 H 1.08004 * 119.98292 * 180.27753 * 15 13 12 41 41 H 1.08001 * 119.97187 * 179.74792 * 16 15 13 42 42 H 1.08003 * 119.98794 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.58814 * 174.40009 * 20 6 5 44 44 H 1.08996 * 109.58208 * 294.68824 * 20 6 5 45 45 H 0.96990 * 120.00409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2446 5 6 3.5705 -0.8450 -1.1679 6 6 3.9603 -1.6608 0.0668 7 1 3.5041 -2.6491 0.0087 8 7 5.4178 -1.7974 0.1226 9 6 5.9726 -2.8379 0.7755 10 8 5.2652 -3.6613 1.3164 11 6 7.4719 -2.9787 0.8324 12 6 7.8309 -4.2158 1.6146 13 6 8.0237 -4.1384 2.9830 14 9 7.8906 -2.9534 3.6182 15 6 8.3483 -5.2768 3.7015 16 6 8.4901 -6.4880 3.0511 17 6 8.3035 -6.5654 1.6839 18 6 7.9736 -5.4293 0.9642 19 9 7.7907 -5.5054 -0.3722 20 6 3.4655 -0.9426 1.3263 21 7 2.0227 -0.6981 1.1952 22 6 1.1535 -1.1127 2.1689 23 1 0.1365 -1.3694 1.9113 24 6 1.5795 -1.2029 3.4869 25 7 2.7013 -0.6224 3.8572 26 14 0.5609 -2.1483 4.7352 27 1 0.4344 -3.5629 4.3013 28 1 1.2282 -2.0953 6.0607 29 1 -0.7895 -1.5388 4.8355 30 1 -0.3633 0.5094 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6080 -1.7256 -1.2906 34 1 1.7684 -0.1674 -2.1365 35 1 4.0071 0.1513 -1.0975 36 1 3.9428 -1.3419 -2.0638 37 1 5.9836 -1.1392 -0.3103 38 1 7.8677 -3.0617 -0.1798 39 1 7.9008 -2.1032 1.3197 40 1 8.4944 -5.2174 4.7699 41 1 8.7474 -7.3745 3.6117 42 1 8.4142 -7.5125 1.1767 43 1 3.6524 -1.5667 2.2001 44 1 3.9905 0.0063 1.4358 45 1 2.9991 -0.6857 4.7781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071772754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:21 Heat of formation + Delta-G solvation = -84.318439 kcal Electronic energy + Delta-G solvation = -30145.022754 eV Core-core repulsion = 25798.795042 eV Total energy + Delta-G solvation = -4346.227712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.08372 -48.96666 -39.69352 -38.70046 -37.51514 -34.36439 -33.06942 -32.76729 -30.70728 -30.38442 -29.80615 -27.86334 -25.81506 -24.84725 -22.96660 -22.56806 -22.15868 -20.65698 -19.94660 -19.18813 -18.21339 -17.43472 -16.93494 -16.48017 -16.15984 -15.76052 -15.63789 -15.46113 -15.27371 -14.95172 -14.49488 -14.45292 -13.89113 -13.76584 -13.67217 -13.36571 -13.29889 -12.84780 -12.78298 -12.36285 -12.31731 -12.05553 -11.84530 -11.70520 -11.44997 -11.35717 -11.08671 -10.85194 -10.66126 -10.48104 -10.37513 -10.23606 -9.93173 -9.74052 -9.43881 -9.41769 -8.91160 -8.82999 -8.48827 -8.36699 -6.57069 -5.69167 -3.13861 0.85494 0.89083 3.04381 3.17272 3.45042 3.51324 3.53295 3.66009 3.83019 4.30917 4.32203 4.53541 4.57609 4.66724 5.01483 5.10160 5.26941 5.33802 5.38190 5.41029 5.53603 5.60802 5.67185 5.73238 5.78401 5.81613 5.92282 6.00495 6.01760 6.13968 6.30005 6.34076 6.42178 6.48504 6.54301 6.64907 6.66102 6.78656 6.99209 7.07639 7.15667 7.36999 7.80211 7.89177 7.96345 8.54798 8.67737 9.29298 9.93654 10.48705 11.38803 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003867 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.300534 B = 7238.673550 C = 8714.292590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.513 3.487 10 O -0.525 6.525 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.146 3.854 14 F -0.124 7.124 15 C -0.164 4.164 16 C -0.064 4.064 17 C -0.166 4.166 18 C 0.140 3.860 19 F -0.130 7.130 20 C 0.168 3.832 21 N -0.584 5.584 22 C -0.254 4.254 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.016 0.984 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 -6.582 -7.702 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.370 5.370 9 C 0.298 3.702 10 O -0.400 6.400 11 C -0.145 4.145 12 C -0.134 4.134 13 C 0.126 3.874 14 F -0.102 7.102 15 C -0.183 4.183 16 C -0.082 4.082 17 C -0.185 4.185 18 C 0.121 3.879 19 F -0.109 7.109 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.113 0.887 44 H 0.034 0.966 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.817 -7.117 -7.149 17.107 hybrid contribution -0.198 0.111 0.380 0.443 sum 13.619 -7.005 -6.769 16.744 Atomic orbital electron populations 1.21802 0.96012 1.01366 1.00204 1.20483 0.93044 0.93539 0.87078 0.95809 1.22042 0.94334 1.01304 0.98903 1.21673 0.97380 0.99629 0.96714 1.21990 0.77745 1.00854 0.98244 0.90130 1.46021 1.08620 1.26730 1.55649 1.20152 0.89306 0.81815 0.78929 1.90761 1.63250 1.41841 1.44179 1.20541 0.95209 0.96686 1.02018 1.19296 1.05731 0.95197 0.93212 1.17190 0.99181 0.81912 0.89126 1.91562 1.92907 1.44182 1.81577 1.21193 1.04217 0.91620 1.01278 1.20804 0.96778 0.97355 0.93294 1.21129 1.04573 0.97812 0.95010 1.17128 0.99896 0.93309 0.77611 1.91507 1.92587 1.96856 1.29912 1.21078 0.83449 0.96893 0.94443 1.44019 1.02613 1.64825 1.19246 1.19096 0.94757 1.38326 0.86150 0.91271 1.25064 0.97718 0.99436 0.97007 1.69979 1.23338 1.44236 1.16878 0.86410 0.79483 0.80406 0.80720 1.20965 1.21674 1.20917 0.91977 0.94359 0.92823 0.92117 0.92704 0.92296 0.93116 0.77480 0.87518 0.87228 0.83971 0.84015 0.84119 0.88677 0.96596 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.95 37.16 0.30 -2.31 16 2 C 0.17 3.45 3.49 -67.60 -0.24 3.21 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.19 5.38 -26.61 -0.14 -2.34 16 5 C -0.12 -1.91 5.36 -26.69 -0.14 -2.05 16 6 C 0.12 2.33 2.60 -67.81 -0.18 2.16 16 7 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 8 N -0.72 -12.00 5.08 -53.69 -0.27 -12.27 16 9 C 0.51 9.27 7.79 -10.99 -0.09 9.18 16 10 O -0.52 -12.10 15.70 5.55 0.09 -12.01 16 11 C -0.10 -1.40 5.48 -29.04 -0.16 -1.56 16 12 C -0.13 -1.87 4.38 -104.49 -0.46 -2.33 16 13 C 0.15 2.07 7.24 -39.43 -0.29 1.78 16 14 F -0.12 -1.97 16.47 2.25 0.04 -1.93 16 15 C -0.16 -1.86 10.02 -39.51 -0.40 -2.26 16 16 C -0.06 -0.61 10.04 -39.61 -0.40 -1.01 16 17 C -0.17 -1.75 10.02 -39.51 -0.40 -2.15 16 18 C 0.14 1.84 7.24 -39.43 -0.29 1.55 16 19 F -0.13 -1.75 16.48 2.25 0.04 -1.71 16 20 C 0.17 4.17 4.86 -3.71 -0.02 4.16 16 21 N -0.58 -14.85 2.99 -164.78 -0.49 -15.34 16 22 C -0.25 -7.09 8.60 -15.06 -0.13 -7.22 16 23 H 0.07 1.88 6.21 -52.48 -0.33 1.55 16 24 C 0.01 0.19 4.96 -17.43 -0.09 0.11 16 25 N -0.90 -27.21 11.14 55.49 0.62 -26.59 16 26 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 27 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.04 7.44 -51.93 -0.39 0.66 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.39 5.01 8.60 -40.82 -0.35 4.66 16 38 H 0.11 1.13 7.64 -51.93 -0.40 0.73 16 39 H 0.11 1.29 7.63 -51.93 -0.40 0.89 16 40 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.10 2.80 6.06 -51.93 -0.31 2.48 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -34.49 372.45 -8.83 -43.32 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.32 Total: 4.18 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.10 Total: -1.07 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.15 Total: -54.21 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.64 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -8.83 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.999 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds