Wall clock time and date at job start Tue Mar 31 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58475 * 2 1 4 4 C 1.53194 * 109.70134 * 239.64742 * 2 1 3 5 5 C 1.53034 * 109.33941 * 185.52385 * 4 2 1 6 6 C 1.53039 * 109.54172 * 61.31569 * 5 4 2 7 7 H 1.09004 * 109.49488 * 58.64779 * 6 5 4 8 8 N 1.46495 * 109.50203 * 178.71840 * 6 5 4 9 9 C 1.34779 * 120.00281 * 204.93616 * 8 6 5 10 10 O 1.21285 * 119.99802 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00155 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.46936 * 180.02562 * 11 9 8 13 13 C 1.38416 * 120.02503 * 269.72548 * 12 11 9 14 14 F 1.35100 * 120.01266 * 359.97438 * 13 12 11 15 15 C 1.38474 * 119.97200 * 179.74704 * 13 12 11 16 16 C 1.38204 * 120.02729 * 0.50814 * 15 13 12 17 17 C 1.38204 * 120.04833 * 359.76814 * 16 15 13 18 18 C 1.38419 * 120.02549 * 90.00263 * 12 11 9 19 19 F 1.35101 * 120.00975 * 359.97438 * 18 12 11 20 20 C 1.53196 * 109.33990 * 298.68759 * 6 5 4 21 21 N 1.46922 * 108.77481 * 54.61236 * 20 6 5 22 22 C 1.36937 * 120.62865 * 126.41459 * 21 20 6 23 23 H 1.08005 * 120.00388 * 209.01416 * 22 21 20 24 24 C 1.38810 * 120.00147 * 29.02332 * 22 21 20 25 25 N 1.31624 * 120.00111 * 15.00378 * 24 22 21 26 26 Si 1.86801 * 120.00405 * 195.01003 * 24 22 21 27 27 H 1.48501 * 109.47157 * 59.99310 * 26 24 22 28 28 H 1.48501 * 109.47362 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46951 * 300.00094 * 26 24 22 30 30 H 1.09001 * 109.46886 * 299.71377 * 1 2 3 31 31 H 1.08995 * 109.46970 * 59.71526 * 1 2 3 32 32 H 1.09006 * 109.47130 * 179.71432 * 1 2 3 33 33 H 1.08998 * 109.49744 * 305.45729 * 4 2 1 34 34 H 1.08998 * 109.49714 * 65.52590 * 4 2 1 35 35 H 1.09003 * 109.43120 * 301.31455 * 5 4 2 36 36 H 1.08999 * 109.48623 * 181.35650 * 5 4 2 37 37 H 0.96999 * 120.00184 * 24.93121 * 8 6 5 38 38 H 1.09004 * 109.47155 * 299.99764 * 11 9 8 39 39 H 1.08993 * 109.46851 * 60.00239 * 11 9 8 40 40 H 1.08004 * 119.98292 * 180.27753 * 15 13 12 41 41 H 1.08001 * 119.97187 * 179.74792 * 16 15 13 42 42 H 1.08003 * 119.98794 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.58814 * 174.40009 * 20 6 5 44 44 H 1.08996 * 109.58208 * 294.68824 * 20 6 5 45 45 H 0.96990 * 120.00409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2446 5 6 3.5705 -0.8450 -1.1679 6 6 3.9603 -1.6608 0.0668 7 1 3.5041 -2.6491 0.0087 8 7 5.4178 -1.7974 0.1226 9 6 5.9726 -2.8379 0.7755 10 8 5.2652 -3.6613 1.3164 11 6 7.4719 -2.9787 0.8324 12 6 7.8309 -4.2158 1.6146 13 6 8.0237 -4.1384 2.9830 14 9 7.8906 -2.9534 3.6182 15 6 8.3483 -5.2768 3.7015 16 6 8.4901 -6.4880 3.0511 17 6 8.3035 -6.5654 1.6839 18 6 7.9736 -5.4293 0.9642 19 9 7.7907 -5.5054 -0.3722 20 6 3.4655 -0.9426 1.3263 21 7 2.0227 -0.6981 1.1952 22 6 1.1535 -1.1127 2.1689 23 1 0.1365 -1.3694 1.9113 24 6 1.5795 -1.2029 3.4869 25 7 2.7013 -0.6224 3.8572 26 14 0.5609 -2.1483 4.7352 27 1 0.4344 -3.5629 4.3013 28 1 1.2282 -2.0953 6.0607 29 1 -0.7895 -1.5388 4.8355 30 1 -0.3633 0.5094 0.8926 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0051 33 1 1.6080 -1.7256 -1.2906 34 1 1.7684 -0.1674 -2.1365 35 1 4.0071 0.1513 -1.0975 36 1 3.9428 -1.3419 -2.0638 37 1 5.9836 -1.1392 -0.3103 38 1 7.8677 -3.0617 -0.1798 39 1 7.9008 -2.1032 1.3197 40 1 8.4944 -5.2174 4.7699 41 1 8.7474 -7.3745 3.6117 42 1 8.4142 -7.5125 1.1767 43 1 3.6524 -1.5667 2.2001 44 1 3.9905 0.0063 1.4358 45 1 2.9991 -0.6857 4.7781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071772754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:20 Heat of formation + Delta-G solvation = -106.397443 kcal Electronic energy + Delta-G solvation = -30145.980171 eV Core-core repulsion = 25798.795042 eV Total energy + Delta-G solvation = -4347.185130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.08125 -50.06382 -41.10100 -39.80793 -39.09250 -36.02133 -34.67905 -34.13758 -32.23207 -31.73402 -31.28093 -29.00182 -27.61916 -26.58062 -24.10593 -23.90350 -23.48499 -22.18428 -21.47129 -20.85819 -19.19831 -18.46216 -18.35404 -18.24194 -17.53164 -17.02482 -16.86754 -16.63693 -16.43940 -16.34315 -16.05985 -15.69925 -15.48241 -15.42079 -15.04796 -14.89964 -14.54156 -14.45309 -14.11434 -13.78804 -13.56398 -13.40972 -13.07935 -12.96235 -12.78413 -12.72699 -12.62541 -12.57606 -12.36219 -12.31007 -12.14268 -12.00999 -11.67700 -11.43899 -11.17091 -10.95648 -10.54953 -10.09406 -9.90780 -9.76229 -8.64302 -7.86607 -5.32985 -0.06530 -0.03394 1.37848 1.43675 1.47777 1.62335 2.11453 2.43801 2.50914 2.88979 3.29625 3.31700 3.40114 3.62889 3.64322 3.85140 3.89175 4.01471 4.07556 4.20275 4.25325 4.34021 4.35272 4.39424 4.59966 4.69568 4.77431 4.82135 4.83133 4.87973 4.99251 5.00849 5.03123 5.05128 5.16998 5.17515 5.28868 5.32443 5.47298 5.53315 5.60073 5.68098 5.76661 5.79441 6.39264 6.59631 7.14023 7.30958 7.88687 8.37621 9.18216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003867 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.300534 B = 7238.673550 C = 8714.292590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.047 0.953 8 N -0.708 5.708 9 C 0.507 3.493 10 O -0.582 6.582 11 C -0.095 4.095 12 C -0.155 4.155 13 C 0.109 3.891 14 F -0.144 7.144 15 C -0.166 4.166 16 C -0.052 4.052 17 C -0.160 4.160 18 C 0.120 3.880 19 F -0.136 7.136 20 C 0.181 3.819 21 N -0.604 5.604 22 C -0.253 4.253 23 H 0.075 0.925 24 C -0.054 4.054 25 N -0.934 5.934 26 Si 0.956 3.044 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.161 0.839 41 H 0.185 0.815 42 H 0.171 0.829 43 H 0.041 0.959 44 H -0.003 1.003 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 -7.500 -9.876 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.065 0.935 8 N -0.360 5.360 9 C 0.294 3.706 10 O -0.461 6.461 11 C -0.134 4.134 12 C -0.157 4.157 13 C 0.090 3.910 14 F -0.123 7.123 15 C -0.185 4.185 16 C -0.070 4.070 17 C -0.178 4.178 18 C 0.100 3.900 19 F -0.114 7.114 20 C 0.053 3.947 21 N -0.328 5.328 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.249 4.249 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.191 1.191 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.251 0.749 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.179 0.821 41 H 0.203 0.797 42 H 0.189 0.811 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.439 -7.997 -9.383 18.986 hybrid contribution -0.385 0.372 1.030 1.161 sum 14.055 -7.625 -8.353 18.040 Atomic orbital electron populations 1.21735 0.94720 1.01122 1.01098 1.20813 0.94321 0.93381 0.86684 0.96029 1.21951 0.94604 1.00812 0.98370 1.21644 0.97078 0.99996 0.95754 1.21504 0.79349 0.98917 0.97728 0.93477 1.45863 1.07658 1.27108 1.55342 1.21023 0.91183 0.80968 0.77469 1.90726 1.65012 1.43959 1.46422 1.20542 0.91383 0.97442 1.04082 1.19458 1.06787 0.95977 0.93504 1.17645 1.01373 0.82252 0.89726 1.91501 1.93395 1.45469 1.81925 1.21575 1.03190 0.91407 1.02318 1.21320 0.94658 0.97904 0.93089 1.21580 1.02665 0.98073 0.95512 1.17421 1.00983 0.93909 0.77652 1.91484 1.92797 1.96891 1.30267 1.20748 0.83725 0.95197 0.94992 1.44328 1.02495 1.65745 1.20253 1.19459 0.95270 1.36785 0.86776 0.90738 1.25803 0.99045 1.01044 0.98994 1.70152 1.25144 1.46277 1.16440 0.85504 0.78852 0.78914 0.78285 1.21320 1.22278 1.19074 0.94326 0.90170 0.93606 0.93090 0.88471 0.90733 0.89594 0.74850 0.84364 0.85872 0.82143 0.79737 0.81148 0.94031 0.98541 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16 2 C 0.15 6.23 3.49 44.98 0.16 6.39 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.76 5.38 30.67 0.16 -3.60 16 5 C -0.11 -3.24 5.36 30.62 0.16 -3.07 16 6 C 0.13 5.30 2.60 45.07 0.12 5.42 16 7 H 0.05 2.24 7.58 -2.38 -0.02 2.22 16 8 N -0.71 -23.63 5.08 -442.16 -2.25 -25.88 16 9 C 0.51 18.81 7.79 87.66 0.68 19.49 16 10 O -0.58 -28.29 15.70 -3.04 -0.05 -28.34 16 11 C -0.10 -2.55 5.48 29.10 0.16 -2.39 16 12 C -0.16 -4.45 4.38 -19.78 -0.09 -4.53 16 13 C 0.11 3.19 7.24 22.37 0.16 3.36 16 14 F -0.14 -4.86 16.47 44.97 0.74 -4.12 16 15 C -0.17 -3.63 10.02 22.32 0.22 -3.40 16 16 C -0.05 -0.85 10.04 22.25 0.22 -0.63 16 17 C -0.16 -3.01 10.02 22.32 0.22 -2.78 16 18 C 0.12 3.06 7.24 22.37 0.16 3.22 16 19 F -0.14 -3.54 16.48 44.97 0.74 -2.80 16 20 C 0.18 9.35 4.86 86.36 0.42 9.77 16 21 N -0.60 -31.50 2.99 -675.23 -2.02 -33.52 16 22 C -0.25 -14.53 8.60 84.03 0.72 -13.81 16 23 H 0.08 4.11 6.21 -2.91 -0.02 4.10 16 24 C -0.05 -3.23 4.96 84.86 0.42 -2.81 16 25 N -0.93 -59.52 11.14 21.65 0.24 -59.28 16 26 Si 0.96 48.63 29.58 68.60 2.03 50.66 16 27 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 29 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 30 H 0.04 1.57 7.62 -2.39 -0.02 1.55 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.73 7.44 -2.38 -0.02 1.71 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 10.00 8.60 -92.71 -0.80 9.21 16 38 H 0.14 2.73 7.64 -2.38 -0.02 2.71 16 39 H 0.12 2.91 7.63 -2.39 -0.02 2.89 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.04 2.60 6.06 -2.39 -0.01 2.59 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.24 15.32 8.31 -92.72 -0.77 14.55 16 Total: -1.00 -82.40 372.45 4.15 -78.25 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.22 Total: 18.58 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 4.49 Total: 6.44 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -4.02 Total: -118.67 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 1.48 Total: -6.91 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -82.40 4.15 -78.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071772754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.144 kcal (2) G-P(sol) polarization free energy of solvation -82.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds