Wall clock time and date at job start Tue Mar 31 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58405 * 2 1 4 4 C 1.53197 * 109.58433 * 120.27986 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.28077 * 4 2 1 6 6 C 1.53040 * 109.66024 * 298.84662 * 5 4 2 7 7 H 1.08998 * 109.49854 * 301.34775 * 6 5 4 8 8 N 1.46509 * 109.49515 * 181.25178 * 6 5 4 9 9 C 1.34775 * 119.99905 * 155.16321 * 8 6 5 10 10 O 1.21289 * 119.99915 * 0.02562 * 9 8 6 11 11 C 1.50693 * 120.00138 * 179.97438 * 9 8 6 12 12 C 1.50700 * 109.47278 * 180.02562 * 11 9 8 13 13 C 1.38206 * 120.00304 * 264.72548 * 12 11 9 14 14 C 1.38424 * 120.00412 * 179.81105 * 13 12 11 15 15 F 1.35095 * 120.00584 * 180.21263 * 14 13 12 16 16 C 1.38474 * 119.99873 * 0.42274 * 14 13 12 17 17 C 1.38170 * 119.99853 * 359.83051 * 16 14 13 18 18 C 1.38426 * 119.99881 * 85.00388 * 12 11 9 19 19 F 1.35098 * 120.00016 * 359.94996 * 18 12 11 20 20 C 1.53190 * 109.30905 * 61.30840 * 6 5 4 21 21 N 1.46922 * 109.59004 * 239.71560 * 2 1 3 22 22 C 1.36938 * 120.62907 * 6.58607 * 21 2 1 23 23 H 1.08007 * 119.99809 * 330.15256 * 22 21 2 24 24 C 1.38812 * 120.00272 * 150.16239 * 22 21 2 25 25 N 1.31625 * 119.99667 * 344.50109 * 24 22 21 26 26 Si 1.86795 * 120.00181 * 164.50719 * 24 22 21 27 27 H 1.48502 * 109.47234 * 59.99768 * 26 24 22 28 28 H 1.48499 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47439 * 299.99570 * 26 24 22 30 30 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47148 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47302 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.49974 * 294.37846 * 4 2 1 34 34 H 1.09001 * 109.49351 * 54.47612 * 4 2 1 35 35 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 36 36 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 37 37 H 0.96993 * 120.00192 * 335.16934 * 8 6 5 38 38 H 1.08995 * 109.47531 * 300.00394 * 11 9 8 39 39 H 1.09006 * 109.46915 * 60.00722 * 11 9 8 40 40 H 1.08007 * 119.99608 * 0.02562 * 13 12 11 41 41 H 1.08000 * 120.00446 * 179.81227 * 16 14 13 42 42 H 1.07996 * 119.99738 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58297 * 185.57615 * 20 6 5 44 44 H 1.08998 * 109.70909 * 65.22211 * 20 6 5 45 45 H 0.96999 * 119.99631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8493 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4984 -2.6528 -0.0084 8 7 5.4143 -1.8050 -0.1197 9 6 5.9679 -2.8453 -0.7738 10 8 5.2595 -3.6657 -1.3181 11 6 7.4669 -2.9884 -0.8301 12 6 7.8245 -4.2241 -1.6151 13 6 8.0714 -5.4139 -0.9566 14 6 8.3960 -6.5498 -1.6779 15 9 8.6332 -7.7138 -1.0345 16 6 8.4819 -6.4922 -3.0587 17 6 8.2401 -5.3015 -3.7168 18 6 7.9112 -4.1662 -2.9954 19 9 7.6743 -3.0022 -3.6389 20 6 3.4651 -0.9452 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1107 -2.1699 23 1 0.1399 -1.3786 -1.9114 24 6 1.5760 -1.1849 -3.4902 25 7 2.6866 -0.5833 -3.8607 26 14 0.5682 -2.1383 -4.7410 27 1 -0.7925 -1.5505 -4.8320 28 1 1.2288 -2.0643 -6.0689 29 1 0.4668 -3.5578 -4.3166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.7659 -0.1641 2.1371 34 1 1.6030 -1.7237 1.2935 35 1 3.9378 -1.3474 2.0653 36 1 4.0059 0.1461 1.0995 37 1 5.9808 -1.1488 0.3153 38 1 7.8977 -2.1128 -1.3156 39 1 7.8620 -3.0738 0.1823 40 1 8.0078 -5.4580 0.1207 41 1 8.7381 -7.3777 -3.6214 42 1 8.3075 -5.2565 -4.7937 43 1 3.6519 -1.5689 -2.1990 44 1 3.9902 0.0038 -1.4341 45 1 2.9818 -0.6354 -4.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:27 Heat of formation + Delta-G solvation = -85.930754 kcal Electronic energy + Delta-G solvation = -29840.535039 eV Core-core repulsion = 25494.237411 eV Total energy + Delta-G solvation = -4346.297627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.04905 -48.87843 -39.81879 -38.71347 -37.51009 -34.38966 -33.11860 -32.77824 -30.79888 -30.22749 -29.82624 -27.91876 -25.84058 -24.86574 -23.19717 -22.44688 -22.14333 -20.68294 -19.98738 -19.21334 -17.73941 -17.33052 -17.29561 -16.86586 -16.40525 -15.81010 -15.61781 -15.30662 -15.06386 -14.64923 -14.48088 -14.31328 -13.91601 -13.78239 -13.56962 -13.45561 -13.36468 -13.10059 -12.79419 -12.66120 -12.36873 -11.96441 -11.93078 -11.80702 -11.40327 -11.17102 -11.09887 -10.86844 -10.67062 -10.50807 -10.38611 -10.25025 -9.95020 -9.77260 -9.51079 -9.43271 -9.16040 -8.59651 -8.51998 -8.37930 -6.57452 -5.70841 -3.15725 0.83016 0.88976 2.99599 3.13995 3.44458 3.50846 3.52910 3.63756 3.99762 4.13003 4.31597 4.50466 4.56702 4.77875 4.97996 5.05411 5.16577 5.32912 5.35966 5.39042 5.50372 5.57086 5.60693 5.69906 5.78565 5.83428 5.93087 5.97839 6.00026 6.11436 6.28394 6.31850 6.40677 6.46793 6.51804 6.63816 6.65821 6.75878 6.95721 7.06605 7.14591 7.34399 7.76846 7.87714 7.93173 8.53623 8.63901 9.27999 9.92230 10.47751 11.37331 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003549 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.243938 B = 7888.334259 C = 9192.421654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.524 6.524 11 C -0.105 4.105 12 C -0.067 4.067 13 C -0.114 4.114 14 C 0.086 3.914 15 F -0.138 7.138 16 C -0.127 4.127 17 C -0.125 4.125 18 C 0.110 3.890 19 F -0.126 7.126 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.255 4.255 23 H 0.069 0.931 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.093 0.907 44 H 0.017 0.983 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 -5.352 8.427 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.296 3.704 10 O -0.399 6.399 11 C -0.145 4.145 12 C -0.068 4.068 13 C -0.133 4.133 14 C 0.067 3.933 15 F -0.117 7.117 16 C -0.145 4.145 17 C -0.144 4.144 18 C 0.091 3.909 19 F -0.105 7.105 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.385 4.385 23 H 0.087 0.913 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.111 0.889 44 H 0.035 0.965 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.490 -5.928 7.839 16.691 hybrid contribution -0.140 -0.129 -0.534 0.567 sum 13.350 -6.057 7.306 16.379 Atomic orbital electron populations 1.21803 0.96023 1.01386 1.00177 1.20482 0.93061 0.93536 0.87066 0.95817 1.22054 0.94331 1.01298 0.98930 1.21677 0.97413 0.99621 0.96664 1.21984 0.77754 1.00842 0.98236 0.90087 1.46042 1.08640 1.26825 1.55563 1.20180 0.89370 0.81822 0.79029 1.90778 1.63211 1.42016 1.43929 1.20654 0.95023 0.96901 1.01958 1.19156 1.00281 0.95509 0.91898 1.20812 1.00917 0.90540 1.01006 1.17551 1.03316 0.81917 0.90565 1.91502 1.92123 1.46177 1.81860 1.20947 1.02162 0.98961 0.92466 1.20976 1.01236 0.90977 1.01170 1.17518 1.00936 0.82619 0.89857 1.91561 1.91657 1.45785 1.81454 1.21055 0.83563 0.96830 0.94354 1.44006 1.02629 1.64846 1.19185 1.19079 0.95087 1.38350 0.85976 0.91337 1.25075 0.97774 0.99202 0.97032 1.69990 1.24030 1.43458 1.16795 0.86423 0.79467 0.80464 0.80736 1.20907 1.21669 1.20945 0.92821 0.91993 0.94369 0.92667 0.92132 0.93139 0.92302 0.77463 0.87303 0.87444 0.83912 0.83857 0.83616 0.88925 0.96527 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.28 16 2 C 0.17 3.40 3.49 -67.60 -0.24 3.16 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.38 -26.59 -0.14 -2.29 16 5 C -0.12 -1.84 5.35 -26.67 -0.14 -1.98 16 6 C 0.12 2.25 2.61 -67.81 -0.18 2.08 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 8 N -0.72 -11.26 5.08 -53.69 -0.27 -11.53 16 9 C 0.51 8.58 7.79 -10.99 -0.09 8.50 16 10 O -0.52 -11.54 15.70 5.55 0.09 -11.46 16 11 C -0.11 -1.24 5.60 -29.04 -0.16 -1.40 16 12 C -0.07 -0.87 4.38 -104.56 -0.46 -1.33 16 13 C -0.11 -1.33 9.66 -39.52 -0.38 -1.71 16 14 C 0.09 1.00 7.30 -39.43 -0.29 0.71 16 15 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 16 C -0.13 -1.34 10.02 -39.52 -0.40 -1.74 16 17 C -0.12 -1.45 10.02 -39.52 -0.40 -1.85 16 18 C 0.11 1.55 7.24 -39.43 -0.29 1.26 16 19 F -0.13 -2.02 16.56 2.25 0.04 -1.99 16 20 C 0.17 4.11 4.86 -3.71 -0.02 4.09 16 21 N -0.58 -14.65 2.99 -164.77 -0.49 -15.14 16 22 C -0.26 -7.08 8.57 -15.06 -0.13 -7.21 16 23 H 0.07 1.85 6.24 -52.48 -0.33 1.52 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 25 N -0.90 -26.96 11.23 55.49 0.62 -26.33 16 26 Si 0.90 22.72 29.58 -169.99 -5.03 17.69 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 30 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 31 H 0.06 1.27 7.64 -51.93 -0.40 0.87 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.39 4.60 8.60 -40.82 -0.35 4.25 16 38 H 0.11 1.14 7.79 -51.93 -0.40 0.74 16 39 H 0.11 0.85 8.05 -51.93 -0.42 0.43 16 40 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.10 373.85 -8.82 -42.93 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.36 Total: 3.61 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.09 Total: -1.83 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.14 Total: -53.00 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.10 -8.82 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.005 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds