Wall clock time and date at job start Tue Mar 31 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58405 * 2 1 4 4 C 1.53197 * 109.58433 * 120.27986 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.28077 * 4 2 1 6 6 C 1.53040 * 109.66024 * 298.84662 * 5 4 2 7 7 H 1.08998 * 109.49854 * 301.34775 * 6 5 4 8 8 N 1.46509 * 109.49515 * 181.25178 * 6 5 4 9 9 C 1.34775 * 119.99905 * 155.16321 * 8 6 5 10 10 O 1.21289 * 119.99915 * 0.02562 * 9 8 6 11 11 C 1.50693 * 120.00138 * 179.97438 * 9 8 6 12 12 C 1.50700 * 109.47278 * 180.02562 * 11 9 8 13 13 C 1.38206 * 120.00304 * 264.72548 * 12 11 9 14 14 C 1.38424 * 120.00412 * 179.81105 * 13 12 11 15 15 F 1.35095 * 120.00584 * 180.21263 * 14 13 12 16 16 C 1.38474 * 119.99873 * 0.42274 * 14 13 12 17 17 C 1.38170 * 119.99853 * 359.83051 * 16 14 13 18 18 C 1.38426 * 119.99881 * 85.00388 * 12 11 9 19 19 F 1.35098 * 120.00016 * 359.94996 * 18 12 11 20 20 C 1.53190 * 109.30905 * 61.30840 * 6 5 4 21 21 N 1.46922 * 109.59004 * 239.71560 * 2 1 3 22 22 C 1.36938 * 120.62907 * 6.58607 * 21 2 1 23 23 H 1.08007 * 119.99809 * 330.15256 * 22 21 2 24 24 C 1.38812 * 120.00272 * 150.16239 * 22 21 2 25 25 N 1.31625 * 119.99667 * 344.50109 * 24 22 21 26 26 Si 1.86795 * 120.00181 * 164.50719 * 24 22 21 27 27 H 1.48502 * 109.47234 * 59.99768 * 26 24 22 28 28 H 1.48499 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47439 * 299.99570 * 26 24 22 30 30 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47148 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47302 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.49974 * 294.37846 * 4 2 1 34 34 H 1.09001 * 109.49351 * 54.47612 * 4 2 1 35 35 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 36 36 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 37 37 H 0.96993 * 120.00192 * 335.16934 * 8 6 5 38 38 H 1.08995 * 109.47531 * 300.00394 * 11 9 8 39 39 H 1.09006 * 109.46915 * 60.00722 * 11 9 8 40 40 H 1.08007 * 119.99608 * 0.02562 * 13 12 11 41 41 H 1.08000 * 120.00446 * 179.81227 * 16 14 13 42 42 H 1.07996 * 119.99738 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58297 * 185.57615 * 20 6 5 44 44 H 1.08998 * 109.70909 * 65.22211 * 20 6 5 45 45 H 0.96999 * 119.99631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8493 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4984 -2.6528 -0.0084 8 7 5.4143 -1.8050 -0.1197 9 6 5.9679 -2.8453 -0.7738 10 8 5.2595 -3.6657 -1.3181 11 6 7.4669 -2.9884 -0.8301 12 6 7.8245 -4.2241 -1.6151 13 6 8.0714 -5.4139 -0.9566 14 6 8.3960 -6.5498 -1.6779 15 9 8.6332 -7.7138 -1.0345 16 6 8.4819 -6.4922 -3.0587 17 6 8.2401 -5.3015 -3.7168 18 6 7.9112 -4.1662 -2.9954 19 9 7.6743 -3.0022 -3.6389 20 6 3.4651 -0.9452 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1107 -2.1699 23 1 0.1399 -1.3786 -1.9114 24 6 1.5760 -1.1849 -3.4902 25 7 2.6866 -0.5833 -3.8607 26 14 0.5682 -2.1383 -4.7410 27 1 -0.7925 -1.5505 -4.8320 28 1 1.2288 -2.0643 -6.0689 29 1 0.4668 -3.5578 -4.3166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.7659 -0.1641 2.1371 34 1 1.6030 -1.7237 1.2935 35 1 3.9378 -1.3474 2.0653 36 1 4.0059 0.1461 1.0995 37 1 5.9808 -1.1488 0.3153 38 1 7.8977 -2.1128 -1.3156 39 1 7.8620 -3.0738 0.1823 40 1 8.0078 -5.4580 0.1207 41 1 8.7381 -7.3777 -3.6214 42 1 8.3075 -5.2565 -4.7937 43 1 3.6519 -1.5689 -2.1990 44 1 3.9902 0.0038 -1.4341 45 1 2.9818 -0.6354 -4.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:26 Heat of formation + Delta-G solvation = -107.543232 kcal Electronic energy + Delta-G solvation = -29841.472226 eV Core-core repulsion = 25494.237411 eV Total energy + Delta-G solvation = -4347.234815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.00583 -49.96140 -41.11176 -39.85943 -39.03526 -35.97877 -34.65563 -34.12375 -32.23933 -31.74212 -31.16701 -29.00083 -27.60422 -26.57052 -24.19194 -24.00588 -23.34459 -22.15471 -21.41876 -20.83855 -18.74101 -18.38071 -18.30748 -18.26377 -18.06163 -17.31211 -16.83293 -16.65205 -16.36804 -16.06920 -15.70629 -15.46917 -15.40343 -15.31298 -15.02997 -14.86095 -14.51969 -14.39153 -14.13849 -14.03428 -13.71889 -13.47681 -13.10355 -12.90835 -12.87243 -12.74844 -12.68040 -12.57109 -12.30126 -12.13643 -12.07274 -11.98453 -11.65869 -11.41040 -11.13957 -10.90619 -10.54180 -10.14935 -10.04194 -9.57177 -8.61993 -7.86365 -5.32687 -0.12283 -0.01235 1.38117 1.43748 1.47753 1.69243 2.10552 2.44857 2.52711 3.08094 3.19483 3.30184 3.40178 3.60764 3.67091 3.91117 3.97341 4.05324 4.09083 4.10607 4.28037 4.33748 4.40696 4.46011 4.62417 4.71144 4.71488 4.82148 4.90176 4.90435 4.94971 4.99950 5.00684 5.07727 5.08266 5.19405 5.31674 5.35410 5.50941 5.54578 5.61268 5.69534 5.74499 5.81627 6.40576 6.66328 7.15450 7.38323 7.89979 8.38924 9.18385 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003549 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.243938 B = 7888.334259 C = 9192.421654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.132 3.868 7 H 0.048 0.952 8 N -0.708 5.708 9 C 0.505 3.495 10 O -0.584 6.584 11 C -0.095 4.095 12 C -0.081 4.081 13 C -0.114 4.114 14 C 0.078 3.922 15 F -0.138 7.138 16 C -0.120 4.120 17 C -0.129 4.129 18 C 0.075 3.925 19 F -0.147 7.147 20 C 0.181 3.819 21 N -0.604 5.604 22 C -0.253 4.253 23 H 0.073 0.927 24 C -0.051 4.051 25 N -0.932 5.932 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.287 1.287 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.038 0.962 44 H -0.003 1.003 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -5.610 11.293 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.026 3.974 7 H 0.067 0.933 8 N -0.360 5.360 9 C 0.292 3.708 10 O -0.463 6.463 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.133 4.133 14 C 0.059 3.941 15 F -0.117 7.117 16 C -0.139 4.139 17 C -0.147 4.147 18 C 0.056 3.944 19 F -0.126 7.126 20 C 0.054 3.946 21 N -0.328 5.328 22 C -0.383 4.383 23 H 0.091 0.909 24 C -0.246 4.246 25 N -0.578 5.578 26 Si 0.782 3.218 27 H -0.191 1.191 28 H -0.223 1.223 29 H -0.214 1.214 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.140 0.860 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.180 0.820 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.182 -6.151 10.764 18.837 hybrid contribution -0.357 -0.063 -1.388 1.435 sum 13.825 -6.214 9.376 17.823 Atomic orbital electron populations 1.21738 0.94869 1.01076 1.01022 1.20809 0.94236 0.93385 0.86782 0.96106 1.21960 0.94829 1.00769 0.98223 1.21642 0.96902 1.00017 0.95863 1.21461 0.79644 0.98877 0.97466 0.93349 1.45858 1.07480 1.27291 1.55346 1.21112 0.91400 0.80851 0.77421 1.90752 1.65112 1.44239 1.46246 1.20697 0.90843 0.97066 1.04768 1.19347 1.00698 0.96541 0.91680 1.21066 1.00060 0.89943 1.02219 1.17747 1.03309 0.81972 0.91097 1.91504 1.92118 1.46135 1.81901 1.21257 1.00802 0.99439 0.92397 1.21233 1.00703 0.90633 1.02146 1.18012 1.02760 0.82735 0.90888 1.91501 1.92144 1.47033 1.81928 1.20745 0.83702 0.95149 0.95045 1.44316 1.02589 1.65777 1.20139 1.19428 0.95569 1.36715 0.86638 0.90920 1.25782 0.99073 1.00823 0.98962 1.70154 1.25812 1.45531 1.16324 0.85542 0.78907 0.78951 0.78383 1.19128 1.22299 1.21384 0.93639 0.94447 0.90210 0.88523 0.93091 0.89367 0.90798 0.74732 0.86021 0.82666 0.81653 0.81032 0.81980 0.94377 0.98514 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.95 71.98 0.57 -4.14 16 2 C 0.15 6.11 3.49 44.98 0.16 6.27 16 3 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.12 -3.64 5.38 30.68 0.17 -3.48 16 5 C -0.11 -3.03 5.35 30.63 0.16 -2.87 16 6 C 0.13 5.06 2.61 45.07 0.12 5.18 16 7 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 8 N -0.71 -21.46 5.08 -442.15 -2.25 -23.71 16 9 C 0.50 16.91 7.79 87.65 0.68 17.59 16 10 O -0.58 -26.76 15.70 -3.06 -0.05 -26.81 16 11 C -0.09 -2.07 5.60 29.10 0.16 -1.91 16 12 C -0.08 -2.06 4.38 -19.83 -0.09 -2.15 16 13 C -0.11 -2.50 9.66 22.31 0.22 -2.28 16 14 C 0.08 1.71 7.30 22.37 0.16 1.87 16 15 F -0.14 -3.01 17.27 44.97 0.78 -2.23 16 16 C -0.12 -2.40 10.02 22.31 0.22 -2.18 16 17 C -0.13 -2.97 10.02 22.31 0.22 -2.74 16 18 C 0.08 2.16 7.24 22.37 0.16 2.32 16 19 F -0.15 -4.98 16.56 44.97 0.74 -4.24 16 20 C 0.18 9.13 4.86 86.36 0.42 9.55 16 21 N -0.60 -31.00 2.99 -675.22 -2.02 -33.02 16 22 C -0.25 -14.44 8.57 84.03 0.72 -13.72 16 23 H 0.07 4.00 6.24 -2.91 -0.02 3.98 16 24 C -0.05 -3.04 4.94 84.86 0.42 -2.63 16 25 N -0.93 -58.91 11.23 21.65 0.24 -58.67 16 26 Si 0.95 48.42 29.58 68.60 2.03 50.45 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 29 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 30 H 0.04 1.70 7.42 -2.39 -0.02 1.68 16 31 H 0.04 1.51 7.64 -2.39 -0.02 1.49 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.42 8.68 8.60 -92.71 -0.80 7.88 16 38 H 0.12 2.38 7.79 -2.39 -0.02 2.36 16 39 H 0.16 1.86 8.05 -2.38 -0.02 1.84 16 40 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.04 2.34 6.15 -2.39 -0.01 2.32 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.26 373.85 4.18 -77.07 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.22 Total: 16.47 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.48 Total: 4.69 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -4.02 Total: -115.40 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 1.52 Total: -6.47 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -81.26 4.18 -77.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.471 kcal (2) G-P(sol) polarization free energy of solvation -81.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds