Wall clock time and date at job start Tue Mar 31 2020 21:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58664 * 2 1 4 4 C 1.53188 * 109.58546 * 239.71600 * 2 1 3 5 5 C 1.53039 * 109.31098 * 185.57691 * 4 2 1 6 6 C 1.53038 * 109.54001 * 61.36745 * 5 4 2 7 7 H 1.09001 * 109.49891 * 178.68458 * 6 5 4 8 8 N 1.46501 * 109.49778 * 58.58425 * 6 5 4 9 9 C 1.34779 * 119.99476 * 155.00485 * 8 6 5 10 10 O 1.21275 * 120.00474 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99462 * 180.02562 * 9 8 6 12 12 C 1.50703 * 109.47193 * 179.97438 * 11 9 8 13 13 C 1.38205 * 119.99848 * 264.72325 * 12 11 9 14 14 C 1.38426 * 119.99824 * 179.76596 * 13 12 11 15 15 F 1.35097 * 119.99846 * 180.22941 * 14 13 12 16 16 C 1.38473 * 119.99841 * 0.53114 * 14 13 12 17 17 C 1.38157 * 120.00048 * 359.72512 * 16 14 13 18 18 C 1.38425 * 119.99963 * 84.99552 * 12 11 9 19 19 F 1.35100 * 120.00015 * 359.97438 * 18 12 11 20 20 C 1.53194 * 109.31135 * 298.63270 * 6 5 4 21 21 N 1.46921 * 109.58732 * 120.42702 * 2 1 3 22 22 C 1.36943 * 120.63280 * 353.39452 * 21 2 1 23 23 H 1.07994 * 119.99485 * 29.02887 * 22 21 2 24 24 C 1.38808 * 120.00034 * 209.03068 * 22 21 2 25 25 N 1.31624 * 120.00407 * 15.00497 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.00842 * 24 22 21 27 27 H 1.48502 * 109.47036 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47301 * 119.99714 * 26 24 22 29 29 H 1.48496 * 109.47092 * 239.99943 * 26 24 22 30 30 H 1.09003 * 109.47277 * 180.28725 * 1 2 3 31 31 H 1.09002 * 109.47225 * 300.28135 * 1 2 3 32 32 H 1.08999 * 109.47294 * 60.28420 * 1 2 3 33 33 H 1.09000 * 109.49895 * 305.52725 * 4 2 1 34 34 H 1.09001 * 109.49947 * 65.62711 * 4 2 1 35 35 H 1.09003 * 109.46377 * 181.38619 * 5 4 2 36 36 H 1.08998 * 109.46686 * 301.34100 * 5 4 2 37 37 H 0.96993 * 120.00211 * 335.00246 * 8 6 5 38 38 H 1.09004 * 109.47278 * 299.99681 * 11 9 8 39 39 H 1.08997 * 109.47329 * 59.99677 * 11 9 8 40 40 H 1.08000 * 120.00084 * 0.02562 * 13 12 11 41 41 H 1.08005 * 120.00069 * 179.69853 * 16 14 13 42 42 H 1.08007 * 119.99916 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58868 * 174.42343 * 20 6 5 44 44 H 1.08998 * 109.58539 * 294.84679 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5674 -0.8465 -1.1712 6 6 3.9569 -1.6658 0.0614 7 1 5.0412 -1.7696 0.1014 8 7 3.3405 -2.9924 -0.0186 9 6 3.8971 -4.0342 0.6306 10 8 4.9084 -3.8736 1.2804 11 6 3.2634 -5.3990 0.5479 12 6 4.0749 -6.3794 1.3550 13 6 5.0351 -7.1567 0.7354 14 6 5.7839 -8.0538 1.4776 15 9 6.7257 -8.8103 0.8728 16 6 5.5631 -8.1803 2.8388 17 6 4.5996 -7.4070 3.4571 18 6 3.8546 -6.5055 2.7157 19 9 2.9124 -5.7492 3.3204 20 6 3.4650 -0.9486 1.3225 21 7 2.0225 -0.7010 1.1936 22 6 1.1537 -1.1158 2.1674 23 1 0.1361 -1.3701 1.9104 24 6 1.5810 -1.2093 3.4848 25 7 2.7042 -0.6315 3.8550 26 14 0.5619 -2.1551 4.7323 27 1 -0.6471 -2.7056 4.0686 28 1 1.3709 -3.2682 5.2905 29 1 0.1514 -1.2428 5.8298 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.6029 -1.7237 -1.2934 34 1 1.7660 -0.1642 -2.1370 35 1 3.9378 -1.3422 -2.0685 36 1 4.0061 0.1487 -1.0992 37 1 2.5319 -3.1210 -0.5386 38 1 2.2490 -5.3533 0.9443 39 1 3.2326 -5.7229 -0.4924 40 1 5.2042 -7.0612 -0.3269 41 1 6.1440 -8.8837 3.4170 42 1 4.4277 -7.5054 4.5189 43 1 3.6518 -1.5744 2.1952 44 1 3.9903 0.0002 1.4316 45 1 3.0029 -0.6972 4.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:30 Heat of formation + Delta-G solvation = -83.539358 kcal Electronic energy + Delta-G solvation = -30591.309249 eV Core-core repulsion = 26245.115321 eV Total energy + Delta-G solvation = -4346.193929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.99448 -48.73717 -39.75528 -38.72421 -37.44662 -34.09513 -33.00684 -32.71246 -30.78295 -30.14286 -29.85250 -27.75047 -26.06477 -24.91947 -23.13312 -22.36394 -22.13711 -20.65494 -20.20494 -18.72054 -17.64758 -17.23492 -17.21447 -16.94248 -16.22315 -15.76121 -15.45207 -15.18091 -15.01077 -14.54210 -14.41841 -14.19669 -13.97437 -13.85404 -13.50649 -13.36382 -13.19705 -13.00694 -12.86066 -12.59392 -12.44388 -11.99595 -11.84225 -11.62096 -11.21515 -11.16492 -11.09481 -10.92485 -10.85591 -10.68334 -10.36240 -10.29680 -9.93421 -9.57444 -9.47245 -9.41506 -9.08562 -8.51061 -8.41599 -8.34134 -6.57694 -5.71667 -3.16158 0.91655 0.96661 3.15164 3.25505 3.41690 3.47946 3.51337 3.82960 4.07868 4.23598 4.41405 4.53580 4.60764 4.85251 5.07209 5.21962 5.28782 5.32537 5.37866 5.46595 5.48709 5.52200 5.61172 5.70042 5.86147 5.90077 6.01493 6.02465 6.09764 6.12087 6.15924 6.32983 6.35264 6.44675 6.52895 6.61033 6.70318 6.74604 6.91572 7.05380 7.13071 7.41619 7.73543 7.86816 8.10906 8.52186 8.80253 9.26740 9.91386 10.46964 11.36148 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.004309 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.372049 B = 6496.771344 C = 8021.597158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.517 3.483 10 O -0.540 6.540 11 C -0.107 4.107 12 C -0.064 4.064 13 C -0.114 4.114 14 C 0.084 3.916 15 F -0.139 7.139 16 C -0.127 4.127 17 C -0.126 4.126 18 C 0.111 3.889 19 F -0.123 7.123 20 C 0.162 3.838 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.068 0.932 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.892 3.108 27 H -0.278 1.278 28 H -0.286 1.286 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -11.903 -9.372 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.302 3.698 10 O -0.417 6.417 11 C -0.147 4.147 12 C -0.066 4.066 13 C -0.133 4.133 14 C 0.064 3.936 15 F -0.118 7.118 16 C -0.146 4.146 17 C -0.145 4.145 18 C 0.092 3.908 19 F -0.101 7.101 20 C 0.035 3.965 21 N -0.306 5.306 22 C -0.380 4.380 23 H 0.086 0.914 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.722 3.278 27 H -0.204 1.204 28 H -0.213 1.213 29 H -0.219 1.219 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.810 -11.744 -8.731 14.901 hybrid contribution -0.846 -0.429 0.581 1.113 sum 1.963 -12.174 -8.150 14.781 Atomic orbital electron populations 1.21794 0.96151 1.01227 1.00108 1.20453 0.92859 0.93610 0.87254 0.95873 1.22063 0.95144 1.00651 0.99063 1.21686 0.97009 1.00132 0.96792 1.21771 0.96884 0.81839 0.98206 0.90767 1.45794 1.29308 1.08512 1.51335 1.20043 0.84701 0.85525 0.79559 1.90705 1.25303 1.85084 1.40586 1.20650 1.00531 0.92078 1.01412 1.19188 0.97769 0.97305 0.92305 1.20798 0.95563 0.95941 1.00999 1.17538 0.90563 0.94185 0.91271 1.91495 1.62522 1.74162 1.83596 1.20915 0.99432 1.01354 0.92921 1.20973 0.96250 0.96270 1.01035 1.17569 0.90158 0.92550 0.90552 1.91605 1.61602 1.73811 1.83117 1.21191 0.83690 0.97046 0.94576 1.44053 1.02721 1.64679 1.19145 1.19106 0.94628 1.38113 0.86186 0.91418 1.25031 0.97598 0.99508 0.96938 1.69987 1.23157 1.44362 1.16761 0.86387 0.79719 0.79860 0.81841 1.20351 1.21293 1.21873 0.92947 0.92101 0.94472 0.92670 0.92932 0.93103 0.91197 0.77057 0.87171 0.87681 0.83982 0.83952 0.83714 0.88390 0.95878 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 2 C 0.16 3.20 3.50 -67.61 -0.24 2.96 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 5 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 6 C 0.12 2.23 2.81 -67.81 -0.19 2.04 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -11.98 4.92 -53.69 -0.26 -12.24 16 9 C 0.52 9.33 7.79 -10.98 -0.09 9.25 16 10 O -0.54 -11.97 15.70 5.56 0.09 -11.88 16 11 C -0.11 -1.46 5.60 -29.03 -0.16 -1.63 16 12 C -0.06 -0.92 4.38 -104.56 -0.46 -1.38 16 13 C -0.11 -1.43 9.66 -39.52 -0.38 -1.81 16 14 C 0.08 1.03 7.30 -39.43 -0.29 0.74 16 15 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 16 C -0.13 -1.44 10.02 -39.52 -0.40 -1.84 16 17 C -0.13 -1.62 10.02 -39.53 -0.40 -2.01 16 18 C 0.11 1.74 7.24 -39.43 -0.29 1.46 16 19 F -0.12 -2.31 16.57 2.25 0.04 -2.27 16 20 C 0.16 3.84 4.89 -3.71 -0.02 3.82 16 21 N -0.58 -13.70 2.91 -164.78 -0.48 -14.18 16 22 C -0.25 -6.57 8.61 -15.06 -0.13 -6.70 16 23 H 0.07 1.74 6.20 -52.49 -0.33 1.41 16 24 C 0.01 0.23 4.96 -17.43 -0.09 0.15 16 25 N -0.90 -26.55 11.14 55.49 0.62 -25.94 16 26 Si 0.89 22.16 29.58 -169.99 -5.03 17.13 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H 0.05 0.93 7.40 -51.93 -0.38 0.55 16 31 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.39 5.89 6.77 -40.82 -0.28 5.61 16 38 H 0.11 1.50 7.79 -51.93 -0.40 1.09 16 39 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 40 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 43 H 0.10 2.77 6.06 -51.93 -0.31 2.46 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -32.46 370.16 -8.71 -41.17 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.19 Total: 5.47 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.11 Total: -1.18 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.13 Total: -52.36 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.46 -8.71 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.371 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds