Wall clock time and date at job start Tue Mar 31 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58664 * 2 1 4 4 C 1.53188 * 109.58546 * 239.71600 * 2 1 3 5 5 C 1.53039 * 109.31098 * 185.57691 * 4 2 1 6 6 C 1.53038 * 109.54001 * 61.36745 * 5 4 2 7 7 H 1.09001 * 109.49891 * 178.68458 * 6 5 4 8 8 N 1.46501 * 109.49778 * 58.58425 * 6 5 4 9 9 C 1.34779 * 119.99476 * 155.00485 * 8 6 5 10 10 O 1.21275 * 120.00474 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99462 * 180.02562 * 9 8 6 12 12 C 1.50703 * 109.47193 * 179.97438 * 11 9 8 13 13 C 1.38205 * 119.99848 * 264.72325 * 12 11 9 14 14 C 1.38426 * 119.99824 * 179.76596 * 13 12 11 15 15 F 1.35097 * 119.99846 * 180.22941 * 14 13 12 16 16 C 1.38473 * 119.99841 * 0.53114 * 14 13 12 17 17 C 1.38157 * 120.00048 * 359.72512 * 16 14 13 18 18 C 1.38425 * 119.99963 * 84.99552 * 12 11 9 19 19 F 1.35100 * 120.00015 * 359.97438 * 18 12 11 20 20 C 1.53194 * 109.31135 * 298.63270 * 6 5 4 21 21 N 1.46921 * 109.58732 * 120.42702 * 2 1 3 22 22 C 1.36943 * 120.63280 * 353.39452 * 21 2 1 23 23 H 1.07994 * 119.99485 * 29.02887 * 22 21 2 24 24 C 1.38808 * 120.00034 * 209.03068 * 22 21 2 25 25 N 1.31624 * 120.00407 * 15.00497 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.00842 * 24 22 21 27 27 H 1.48502 * 109.47036 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47301 * 119.99714 * 26 24 22 29 29 H 1.48496 * 109.47092 * 239.99943 * 26 24 22 30 30 H 1.09003 * 109.47277 * 180.28725 * 1 2 3 31 31 H 1.09002 * 109.47225 * 300.28135 * 1 2 3 32 32 H 1.08999 * 109.47294 * 60.28420 * 1 2 3 33 33 H 1.09000 * 109.49895 * 305.52725 * 4 2 1 34 34 H 1.09001 * 109.49947 * 65.62711 * 4 2 1 35 35 H 1.09003 * 109.46377 * 181.38619 * 5 4 2 36 36 H 1.08998 * 109.46686 * 301.34100 * 5 4 2 37 37 H 0.96993 * 120.00211 * 335.00246 * 8 6 5 38 38 H 1.09004 * 109.47278 * 299.99681 * 11 9 8 39 39 H 1.08997 * 109.47329 * 59.99677 * 11 9 8 40 40 H 1.08000 * 120.00084 * 0.02562 * 13 12 11 41 41 H 1.08005 * 120.00069 * 179.69853 * 16 14 13 42 42 H 1.08007 * 119.99916 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58868 * 174.42343 * 20 6 5 44 44 H 1.08998 * 109.58539 * 294.84679 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5674 -0.8465 -1.1712 6 6 3.9569 -1.6658 0.0614 7 1 5.0412 -1.7696 0.1014 8 7 3.3405 -2.9924 -0.0186 9 6 3.8971 -4.0342 0.6306 10 8 4.9084 -3.8736 1.2804 11 6 3.2634 -5.3990 0.5479 12 6 4.0749 -6.3794 1.3550 13 6 5.0351 -7.1567 0.7354 14 6 5.7839 -8.0538 1.4776 15 9 6.7257 -8.8103 0.8728 16 6 5.5631 -8.1803 2.8388 17 6 4.5996 -7.4070 3.4571 18 6 3.8546 -6.5055 2.7157 19 9 2.9124 -5.7492 3.3204 20 6 3.4650 -0.9486 1.3225 21 7 2.0225 -0.7010 1.1936 22 6 1.1537 -1.1158 2.1674 23 1 0.1361 -1.3701 1.9104 24 6 1.5810 -1.2093 3.4848 25 7 2.7042 -0.6315 3.8550 26 14 0.5619 -2.1551 4.7323 27 1 -0.6471 -2.7056 4.0686 28 1 1.3709 -3.2682 5.2905 29 1 0.1514 -1.2428 5.8298 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3634 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.6029 -1.7237 -1.2934 34 1 1.7660 -0.1642 -2.1370 35 1 3.9378 -1.3422 -2.0685 36 1 4.0061 0.1487 -1.0992 37 1 2.5319 -3.1210 -0.5386 38 1 2.2490 -5.3533 0.9443 39 1 3.2326 -5.7229 -0.4924 40 1 5.2042 -7.0612 -0.3269 41 1 6.1440 -8.8837 3.4170 42 1 4.4277 -7.5054 4.5189 43 1 3.6518 -1.5744 2.1952 44 1 3.9903 0.0002 1.4316 45 1 3.0029 -0.6972 4.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:29 Heat of formation + Delta-G solvation = -103.196893 kcal Electronic energy + Delta-G solvation = -30592.161664 eV Core-core repulsion = 26245.115321 eV Total energy + Delta-G solvation = -4347.046343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.01439 -49.95440 -41.13102 -39.91301 -38.93615 -35.74527 -34.49110 -34.10826 -32.19909 -31.71572 -31.15716 -28.89226 -27.72448 -26.65504 -24.16509 -23.89346 -23.43715 -22.12896 -21.60696 -20.34752 -18.74786 -18.39921 -18.29864 -18.29144 -17.95214 -17.16847 -16.80583 -16.53646 -16.37204 -16.02605 -15.68624 -15.51562 -15.42012 -15.29700 -14.92993 -14.69695 -14.54767 -14.35042 -14.17878 -13.91987 -13.70077 -13.59021 -13.01536 -12.89887 -12.88251 -12.79353 -12.61954 -12.51135 -12.40230 -12.09924 -12.07474 -12.02583 -11.55754 -11.20098 -11.03737 -10.89997 -10.52754 -10.14289 -9.89652 -9.57149 -8.56691 -7.81440 -5.26425 -0.11965 -0.01065 1.38519 1.43649 1.49888 1.76578 2.17629 2.50222 2.58267 3.08112 3.20652 3.35567 3.41475 3.61361 3.64880 3.93956 3.99153 4.08853 4.10365 4.13430 4.21655 4.34442 4.47098 4.52467 4.66387 4.71307 4.76873 4.85052 4.90041 4.94422 4.98610 5.00671 5.06567 5.09425 5.12268 5.14295 5.29462 5.35344 5.58836 5.64204 5.72183 5.74500 5.77352 5.78577 6.45202 6.73872 7.19958 7.43872 7.94762 8.44676 9.23612 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012368 B = 0.004309 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.372049 B = 6496.771344 C = 8021.597158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.062 0.938 8 N -0.690 5.690 9 C 0.509 3.491 10 O -0.588 6.588 11 C -0.098 4.098 12 C -0.078 4.078 13 C -0.112 4.112 14 C 0.081 3.919 15 F -0.136 7.136 16 C -0.118 4.118 17 C -0.129 4.129 18 C 0.071 3.929 19 F -0.152 7.152 20 C 0.171 3.829 21 N -0.594 5.594 22 C -0.232 4.232 23 H 0.079 0.921 24 C -0.052 4.052 25 N -0.938 5.938 26 Si 0.942 3.058 27 H -0.257 1.257 28 H -0.304 1.304 29 H -0.296 1.296 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.409 0.591 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.047 0.953 44 H -0.009 1.009 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 -13.576 -12.764 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.080 0.920 8 N -0.342 5.342 9 C 0.296 3.704 10 O -0.469 6.469 11 C -0.138 4.138 12 C -0.079 4.079 13 C -0.130 4.130 14 C 0.062 3.938 15 F -0.115 7.115 16 C -0.137 4.137 17 C -0.147 4.147 18 C 0.052 3.948 19 F -0.131 7.131 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.362 4.362 23 H 0.096 0.904 24 C -0.247 4.247 25 N -0.585 5.585 26 Si 0.772 3.228 27 H -0.181 1.181 28 H -0.232 1.232 29 H -0.223 1.223 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.128 0.872 39 H 0.171 0.829 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.065 0.935 44 H 0.009 0.991 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.815 -13.424 -12.188 18.222 hybrid contribution -0.507 0.112 1.596 1.678 sum 1.308 -13.312 -10.592 17.062 Atomic orbital electron populations 1.21725 0.94654 1.01450 1.00740 1.20783 0.94204 0.93102 0.87166 0.97195 1.21949 0.94630 1.01240 0.97858 1.21652 0.97340 0.99694 0.96029 1.21426 0.96152 0.82779 0.97393 0.92030 1.45701 1.29661 1.07627 1.51162 1.20863 0.84116 0.87165 0.78286 1.90681 1.27696 1.86056 1.42455 1.20678 0.99656 0.89185 1.04255 1.19329 0.98670 0.97981 0.91963 1.21042 0.94564 0.95167 1.02273 1.17696 0.90402 0.94019 0.91699 1.91507 1.62362 1.74027 1.83583 1.21237 0.98599 1.00938 0.92914 1.21208 0.95993 0.95708 1.01829 1.18106 0.91069 0.93885 0.91766 1.91523 1.62932 1.74899 1.83720 1.20854 0.84159 0.95097 0.95477 1.44273 1.02182 1.65357 1.19992 1.19454 0.95046 1.35352 0.86396 0.90387 1.25674 0.98732 1.01380 0.98910 1.70164 1.25223 1.46986 1.16152 0.85559 0.79001 0.78146 0.80094 1.18099 1.23217 1.22330 0.92782 0.94835 0.90591 0.91412 0.89210 0.89370 0.91333 0.75377 0.87200 0.82901 0.81495 0.80836 0.82235 0.93483 0.99149 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.94 71.98 0.57 -3.65 16 2 C 0.15 5.64 3.50 44.97 0.16 5.80 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.15 5.21 30.67 0.16 -2.99 16 5 C -0.11 -3.03 5.59 30.62 0.17 -2.86 16 6 C 0.13 4.81 2.81 45.07 0.13 4.93 16 7 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 8 N -0.69 -22.76 4.92 -442.16 -2.17 -24.93 16 9 C 0.51 18.21 7.79 87.66 0.68 18.89 16 10 O -0.59 -26.93 15.70 -3.01 -0.05 -26.98 16 11 C -0.10 -2.55 5.60 29.10 0.16 -2.39 16 12 C -0.08 -2.18 4.38 -19.83 -0.09 -2.27 16 13 C -0.11 -2.57 9.66 22.31 0.22 -2.36 16 14 C 0.08 1.83 7.30 22.37 0.16 1.99 16 15 F -0.14 -2.98 17.27 44.97 0.78 -2.20 16 16 C -0.12 -2.47 10.02 22.31 0.22 -2.24 16 17 C -0.13 -3.24 10.02 22.31 0.22 -3.02 16 18 C 0.07 2.26 7.24 22.37 0.16 2.42 16 19 F -0.15 -5.99 16.57 44.97 0.74 -5.25 16 20 C 0.17 8.49 4.89 86.36 0.42 8.91 16 21 N -0.59 -28.18 2.91 -675.24 -1.96 -30.14 16 22 C -0.23 -12.28 8.61 84.03 0.72 -11.56 16 23 H 0.08 3.93 6.20 -2.91 -0.02 3.92 16 24 C -0.05 -3.01 4.96 84.86 0.42 -2.59 16 25 N -0.94 -58.82 11.14 21.65 0.24 -58.57 16 26 Si 0.94 47.18 29.58 68.60 2.03 49.21 16 27 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 29 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 30 H 0.05 1.75 7.40 -2.39 -0.02 1.73 16 31 H 0.03 1.26 7.66 -2.39 -0.02 1.24 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.68 6.40 -2.39 -0.02 1.66 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 10.98 6.77 -92.71 -0.63 10.35 16 38 H 0.11 2.87 7.79 -2.39 -0.02 2.86 16 39 H 0.15 2.38 8.05 -2.39 -0.02 2.36 16 40 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 42 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 44 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -77.24 370.16 4.50 -72.74 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.40 Total: 19.09 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.50 Total: 7.04 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -3.90 Total: -113.65 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.52 Total: -7.45 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -77.24 4.50 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.460 kcal (2) G-P(sol) polarization free energy of solvation -77.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds