Wall clock time and date at job start Tue Mar 31 2020 21:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.69650 * 2 1 4 4 C 1.53188 * 109.58500 * 120.35657 * 2 1 3 5 5 C 1.53041 * 109.31013 * 174.42393 * 4 2 1 6 6 C 1.53044 * 109.52745 * 298.64313 * 5 4 2 7 7 H 1.09000 * 109.49777 * 181.30933 * 6 5 4 8 8 N 1.46504 * 109.49411 * 301.40673 * 6 5 4 9 9 C 1.34775 * 119.99358 * 204.99891 * 8 6 5 10 10 O 1.21280 * 120.00614 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99294 * 180.02562 * 9 8 6 12 12 C 1.50710 * 109.47088 * 180.02562 * 11 9 8 13 13 C 1.38201 * 119.99848 * 264.72902 * 12 11 9 14 14 C 1.38435 * 119.99838 * 179.85653 * 13 12 11 15 15 F 1.35097 * 119.99922 * 180.16011 * 14 13 12 16 16 C 1.38469 * 119.99888 * 0.36777 * 14 13 12 17 17 C 1.38162 * 120.00023 * 359.84143 * 16 14 13 18 18 C 1.38425 * 119.99874 * 84.99645 * 12 11 9 19 19 F 1.35104 * 120.00116 * 359.96078 * 18 12 11 20 20 C 1.53169 * 109.32698 * 61.37184 * 6 5 4 21 21 N 1.46923 * 109.58607 * 239.64997 * 2 1 3 22 22 C 1.36937 * 120.63132 * 6.57484 * 21 2 1 23 23 H 1.08001 * 120.00565 * 330.17498 * 22 21 2 24 24 C 1.38814 * 119.99887 * 150.16356 * 22 21 2 25 25 N 1.31627 * 119.99987 * 344.51489 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.50881 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 H 1.09001 * 109.47265 * 299.64278 * 1 2 3 31 31 H 1.08997 * 109.47168 * 59.64441 * 1 2 3 32 32 H 1.08999 * 109.46881 * 179.64310 * 1 2 3 33 33 H 1.08996 * 109.49776 * 54.47779 * 4 2 1 34 34 H 1.09004 * 109.49880 * 294.37145 * 4 2 1 35 35 H 1.09008 * 109.46186 * 58.65302 * 5 4 2 36 36 H 1.09001 * 109.46071 * 178.62763 * 5 4 2 37 37 H 0.96997 * 119.99779 * 25.00106 * 8 6 5 38 38 H 1.08999 * 109.47635 * 299.99623 * 11 9 8 39 39 H 1.09000 * 109.47330 * 60.00380 * 11 9 8 40 40 H 1.08004 * 120.00096 * 359.97438 * 13 12 11 41 41 H 1.07995 * 120.00037 * 179.81047 * 16 14 13 42 42 H 1.07999 * 120.00000 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.58739 * 185.57134 * 20 6 5 44 44 H 1.09002 * 109.70624 * 65.21202 * 20 6 5 45 45 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1701 6 6 3.9567 -1.6655 -0.0638 7 1 5.0409 -1.7693 -0.1042 8 7 3.3403 -2.9923 0.0145 9 6 3.8967 -4.0331 -0.6361 10 8 4.9079 -3.8716 -1.2860 11 6 3.2623 -5.3978 -0.5561 12 6 4.0738 -6.3772 -1.3645 13 6 3.7182 -6.6573 -2.6703 14 6 4.4654 -7.5547 -3.4138 15 9 4.1197 -7.8261 -4.6912 16 6 5.5645 -8.1774 -2.8467 17 6 5.9174 -7.9006 -1.5399 18 6 5.1721 -7.0004 -0.7973 19 9 5.5170 -6.7300 0.4807 20 6 3.4650 -0.9468 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 1.1536 -1.1134 -2.1686 23 1 0.1397 -1.3808 -1.9097 24 6 1.5758 -1.1891 -3.4888 25 7 2.6864 -0.5880 -3.8601 26 14 0.5680 -2.1442 -4.7383 27 1 -0.7927 -1.5565 -4.8301 28 1 1.2291 -2.0727 -6.0662 29 1 0.4667 -3.5631 -4.3122 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.6030 -1.7253 1.2912 34 1 1.7660 -0.1668 2.1368 35 1 4.0061 0.1475 1.0993 36 1 3.9378 -1.3450 2.0667 37 1 2.5317 -3.1214 0.5346 38 1 3.2310 -5.7235 0.4836 39 1 2.2482 -5.3509 -0.9529 40 1 2.8586 -6.1747 -3.1112 41 1 6.1456 -8.8798 -3.4257 42 1 6.7744 -8.3866 -1.0975 43 1 3.6518 -1.5715 -2.1973 44 1 3.9901 0.0021 -1.4342 45 1 2.9815 -0.6413 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071775598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:33 Heat of formation + Delta-G solvation = -84.754256 kcal Electronic energy + Delta-G solvation = -30463.494528 eV Core-core repulsion = 26117.247917 eV Total energy + Delta-G solvation = -4346.246611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.94038 -48.92440 -39.75986 -38.73329 -37.45382 -34.10332 -33.01016 -32.72629 -30.78464 -30.16012 -29.88544 -27.76102 -26.07654 -24.93179 -23.15078 -22.37585 -22.15986 -20.66320 -20.21112 -18.73181 -17.72262 -17.26358 -17.24062 -16.95389 -16.24346 -15.76466 -15.45304 -15.29535 -14.97784 -14.61967 -14.36148 -14.25813 -14.00889 -13.88374 -13.55160 -13.39400 -13.17906 -13.05685 -12.77314 -12.65210 -12.46921 -12.06107 -11.85359 -11.61467 -11.22456 -11.17757 -11.10088 -10.95931 -10.87504 -10.71251 -10.39913 -10.34167 -9.97154 -9.58595 -9.48590 -9.42566 -9.07996 -8.54687 -8.44766 -8.34900 -6.59232 -5.75131 -3.19795 0.89512 0.96828 3.15960 3.24117 3.36451 3.42179 3.45328 3.82150 4.11640 4.14047 4.41893 4.49175 4.56571 4.87918 5.06536 5.23487 5.30575 5.31725 5.36550 5.44889 5.47545 5.50811 5.59727 5.68664 5.83345 5.93384 6.00712 6.01407 6.09928 6.11834 6.15558 6.32786 6.34460 6.44190 6.52609 6.60487 6.69312 6.72858 6.90702 7.04637 7.12384 7.39891 7.69340 7.83083 8.10472 8.49364 8.79979 9.23501 9.88004 10.44955 11.32808 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.004494 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.929149 B = 6228.356051 C = 8037.151898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.517 3.483 10 O -0.540 6.540 11 C -0.107 4.107 12 C -0.060 4.060 13 C -0.111 4.111 14 C 0.091 3.909 15 F -0.136 7.136 16 C -0.129 4.129 17 C -0.126 4.126 18 C 0.103 3.897 19 F -0.134 7.134 20 C 0.163 3.837 21 N -0.582 5.582 22 C -0.252 4.252 23 H 0.067 0.933 24 C 0.007 3.993 25 N -0.898 5.898 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -12.043 9.546 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.302 3.698 10 O -0.417 6.417 11 C -0.147 4.147 12 C -0.062 4.062 13 C -0.129 4.129 14 C 0.071 3.929 15 F -0.115 7.115 16 C -0.148 4.148 17 C -0.145 4.145 18 C 0.083 3.917 19 F -0.112 7.112 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.541 5.541 26 Si 0.725 3.275 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.049 -11.874 8.895 15.146 hybrid contribution -0.870 -0.431 -0.592 1.137 sum 2.179 -12.304 8.303 15.003 Atomic orbital electron populations 1.21788 0.96131 1.01210 1.00119 1.20461 0.92854 0.93630 0.87219 0.95844 1.22063 0.95147 1.00649 0.99065 1.21689 0.97006 1.00133 0.96816 1.21756 0.96918 0.81829 0.98157 0.90762 1.45789 1.29355 1.08546 1.51247 1.20032 0.84694 0.85498 0.79552 1.90705 1.25215 1.85039 1.40755 1.20658 1.00456 0.92080 1.01527 1.19170 0.95478 0.97110 0.94393 1.20972 1.01319 0.97556 0.93099 1.17596 0.96486 0.98954 0.79830 1.91515 1.91732 1.92640 1.35586 1.20918 0.96890 1.01601 0.95416 1.20883 1.00665 0.98918 0.94037 1.17442 0.95733 0.98457 0.80058 1.91493 1.91532 1.92777 1.35410 1.21150 0.83764 0.97010 0.94461 1.44027 1.02666 1.64806 1.19058 1.19015 0.95001 1.38161 0.86008 0.91550 1.25073 0.97729 0.99439 0.96974 1.69980 1.23913 1.43426 1.16811 0.86500 0.79631 0.80228 0.81134 1.20968 1.21671 1.21177 0.94468 0.92094 0.92962 0.92666 0.92914 0.91184 0.93052 0.77039 0.87788 0.87030 0.83572 0.83908 0.83832 0.88724 0.95779 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.95 37.16 0.30 -2.08 16 2 C 0.17 3.17 3.50 -67.60 -0.24 2.94 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 5 C -0.12 -1.83 5.59 -26.69 -0.15 -1.98 16 6 C 0.12 2.24 2.81 -67.82 -0.19 2.04 16 7 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 8 N -0.70 -11.99 4.92 -53.70 -0.26 -12.26 16 9 C 0.52 9.37 7.79 -10.99 -0.09 9.28 16 10 O -0.54 -11.97 15.70 5.56 0.09 -11.89 16 11 C -0.11 -1.48 5.60 -29.03 -0.16 -1.64 16 12 C -0.06 -0.87 4.38 -104.56 -0.46 -1.32 16 13 C -0.11 -1.61 9.66 -39.52 -0.38 -1.99 16 14 C 0.09 1.23 7.30 -39.42 -0.29 0.95 16 15 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 16 C -0.13 -1.46 10.02 -39.52 -0.40 -1.85 16 17 C -0.13 -1.43 10.02 -39.52 -0.40 -1.82 16 18 C 0.10 1.40 7.24 -39.43 -0.29 1.11 16 19 F -0.13 -1.87 16.56 2.25 0.04 -1.83 16 20 C 0.16 3.83 4.88 -3.72 -0.02 3.81 16 21 N -0.58 -13.51 2.90 -164.79 -0.48 -13.99 16 22 C -0.25 -6.48 8.58 -15.06 -0.13 -6.61 16 23 H 0.07 1.66 6.23 -52.49 -0.33 1.34 16 24 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 25 N -0.90 -26.17 11.23 55.49 0.62 -25.55 16 26 Si 0.89 21.62 29.58 -169.99 -5.03 16.59 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 32 H 0.05 0.92 7.40 -51.93 -0.38 0.53 16 33 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 5.90 6.77 -40.82 -0.28 5.63 16 38 H 0.10 1.15 7.79 -51.93 -0.40 0.75 16 39 H 0.11 1.39 8.05 -51.93 -0.42 0.97 16 40 H 0.15 2.11 8.06 -52.48 -0.42 1.68 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16 44 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -31.54 370.31 -8.70 -40.24 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.19 Total: 6.21 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.11 Total: -1.21 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.12 Total: -51.80 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.54 -8.70 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.511 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds