Wall clock time and date at job start Tue Mar 31 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.69650 * 2 1 4 4 C 1.53188 * 109.58500 * 120.35657 * 2 1 3 5 5 C 1.53041 * 109.31013 * 174.42393 * 4 2 1 6 6 C 1.53044 * 109.52745 * 298.64313 * 5 4 2 7 7 H 1.09000 * 109.49777 * 181.30933 * 6 5 4 8 8 N 1.46504 * 109.49411 * 301.40673 * 6 5 4 9 9 C 1.34775 * 119.99358 * 204.99891 * 8 6 5 10 10 O 1.21280 * 120.00614 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99294 * 180.02562 * 9 8 6 12 12 C 1.50710 * 109.47088 * 180.02562 * 11 9 8 13 13 C 1.38201 * 119.99848 * 264.72902 * 12 11 9 14 14 C 1.38435 * 119.99838 * 179.85653 * 13 12 11 15 15 F 1.35097 * 119.99922 * 180.16011 * 14 13 12 16 16 C 1.38469 * 119.99888 * 0.36777 * 14 13 12 17 17 C 1.38162 * 120.00023 * 359.84143 * 16 14 13 18 18 C 1.38425 * 119.99874 * 84.99645 * 12 11 9 19 19 F 1.35104 * 120.00116 * 359.96078 * 18 12 11 20 20 C 1.53169 * 109.32698 * 61.37184 * 6 5 4 21 21 N 1.46923 * 109.58607 * 239.64997 * 2 1 3 22 22 C 1.36937 * 120.63132 * 6.57484 * 21 2 1 23 23 H 1.08001 * 120.00565 * 330.17498 * 22 21 2 24 24 C 1.38814 * 119.99887 * 150.16356 * 22 21 2 25 25 N 1.31627 * 119.99987 * 344.51489 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 164.50881 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 H 1.09001 * 109.47265 * 299.64278 * 1 2 3 31 31 H 1.08997 * 109.47168 * 59.64441 * 1 2 3 32 32 H 1.08999 * 109.46881 * 179.64310 * 1 2 3 33 33 H 1.08996 * 109.49776 * 54.47779 * 4 2 1 34 34 H 1.09004 * 109.49880 * 294.37145 * 4 2 1 35 35 H 1.09008 * 109.46186 * 58.65302 * 5 4 2 36 36 H 1.09001 * 109.46071 * 178.62763 * 5 4 2 37 37 H 0.96997 * 119.99779 * 25.00106 * 8 6 5 38 38 H 1.08999 * 109.47635 * 299.99623 * 11 9 8 39 39 H 1.09000 * 109.47330 * 60.00380 * 11 9 8 40 40 H 1.08004 * 120.00096 * 359.97438 * 13 12 11 41 41 H 1.07995 * 120.00037 * 179.81047 * 16 14 13 42 42 H 1.07999 * 120.00000 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.58739 * 185.57134 * 20 6 5 44 44 H 1.09002 * 109.70624 * 65.21202 * 20 6 5 45 45 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1701 6 6 3.9567 -1.6655 -0.0638 7 1 5.0409 -1.7693 -0.1042 8 7 3.3403 -2.9923 0.0145 9 6 3.8967 -4.0331 -0.6361 10 8 4.9079 -3.8716 -1.2860 11 6 3.2623 -5.3978 -0.5561 12 6 4.0738 -6.3772 -1.3645 13 6 3.7182 -6.6573 -2.6703 14 6 4.4654 -7.5547 -3.4138 15 9 4.1197 -7.8261 -4.6912 16 6 5.5645 -8.1774 -2.8467 17 6 5.9174 -7.9006 -1.5399 18 6 5.1721 -7.0004 -0.7973 19 9 5.5170 -6.7300 0.4807 20 6 3.4650 -0.9468 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 1.1536 -1.1134 -2.1686 23 1 0.1397 -1.3808 -1.9097 24 6 1.5758 -1.1891 -3.4888 25 7 2.6864 -0.5880 -3.8601 26 14 0.5680 -2.1442 -4.7383 27 1 -0.7927 -1.5565 -4.8301 28 1 1.2291 -2.0727 -6.0662 29 1 0.4667 -3.5631 -4.3122 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.6030 -1.7253 1.2912 34 1 1.7660 -0.1668 2.1368 35 1 4.0061 0.1475 1.0993 36 1 3.9378 -1.3450 2.0667 37 1 2.5317 -3.1214 0.5346 38 1 3.2310 -5.7235 0.4836 39 1 2.2482 -5.3509 -0.9529 40 1 2.8586 -6.1747 -3.1112 41 1 6.1456 -8.8798 -3.4257 42 1 6.7744 -8.3866 -1.0975 43 1 3.6518 -1.5715 -2.1973 44 1 3.9901 0.0021 -1.4342 45 1 2.9815 -0.6413 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071775598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:32 Heat of formation + Delta-G solvation = -103.281276 kcal Electronic energy + Delta-G solvation = -30464.297920 eV Core-core repulsion = 26117.247917 eV Total energy + Delta-G solvation = -4347.050002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.99982 -49.97798 -41.14222 -39.91839 -38.94138 -35.74781 -34.48757 -34.11061 -32.20312 -31.72996 -31.17928 -28.90143 -27.72306 -26.65029 -24.18982 -23.88485 -23.45134 -22.13510 -21.62105 -20.35350 -18.75627 -18.40845 -18.31749 -18.29358 -17.96468 -17.16204 -16.81921 -16.51624 -16.36675 -16.06068 -15.71768 -15.50728 -15.41843 -15.29787 -14.93410 -14.71192 -14.51046 -14.43020 -14.11421 -13.88358 -13.76989 -13.61520 -12.97743 -12.92421 -12.88010 -12.77123 -12.59062 -12.54809 -12.41193 -12.13000 -12.09954 -12.04501 -11.56333 -11.20594 -11.04671 -10.90748 -10.50792 -10.15880 -9.90353 -9.57653 -8.55566 -7.81100 -5.26736 -0.12368 -0.02248 1.41530 1.43194 1.49491 1.75919 2.16216 2.50575 2.56445 3.08886 3.15350 3.34742 3.40054 3.59284 3.64851 3.92883 3.97996 4.06454 4.10930 4.12593 4.20564 4.33109 4.44093 4.51602 4.66436 4.71024 4.76536 4.84436 4.89533 4.95697 4.98155 4.99262 5.06141 5.08275 5.11716 5.13703 5.28971 5.34499 5.58811 5.63238 5.71818 5.73755 5.75654 5.77570 6.45361 6.72376 7.19919 7.42142 7.94390 8.45926 9.24036 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.004494 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.929149 B = 6228.356051 C = 8037.151898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.009 0.991 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.060 0.940 8 N -0.690 5.690 9 C 0.509 3.491 10 O -0.588 6.588 11 C -0.099 4.099 12 C -0.078 4.078 13 C -0.130 4.130 14 C 0.074 3.926 15 F -0.144 7.144 16 C -0.117 4.117 17 C -0.117 4.117 18 C 0.089 3.911 19 F -0.137 7.137 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.235 4.235 23 H 0.078 0.922 24 C -0.054 4.054 25 N -0.938 5.938 26 Si 0.947 3.053 27 H -0.272 1.272 28 H -0.308 1.308 29 H -0.276 1.276 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.409 0.591 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.046 0.954 44 H -0.009 1.009 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -13.810 12.537 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.078 0.922 8 N -0.341 5.341 9 C 0.296 3.704 10 O -0.468 6.468 11 C -0.138 4.138 12 C -0.079 4.079 13 C -0.149 4.149 14 C 0.054 3.946 15 F -0.123 7.123 16 C -0.136 4.136 17 C -0.135 4.135 18 C 0.070 3.930 19 F -0.115 7.115 20 C 0.046 3.954 21 N -0.317 5.317 22 C -0.366 4.366 23 H 0.096 0.904 24 C -0.249 4.249 25 N -0.585 5.585 26 Si 0.776 3.224 27 H -0.197 1.197 28 H -0.235 1.235 29 H -0.202 1.202 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.194 0.806 42 H 0.195 0.805 43 H 0.064 0.936 44 H 0.009 0.991 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.117 -13.649 11.951 18.265 hybrid contribution -0.580 0.173 -1.489 1.607 sum 1.537 -13.476 10.462 17.130 Atomic orbital electron populations 1.21717 0.94594 1.01502 1.00696 1.20777 0.94218 0.93066 0.87152 0.97280 1.21949 0.94536 1.01245 0.97940 1.21657 0.97439 0.99706 0.95999 1.21419 0.96097 0.82747 0.97462 0.92183 1.45701 1.29708 1.07683 1.51048 1.20833 0.84121 0.87086 0.78335 1.90680 1.27510 1.85994 1.42648 1.20670 1.00384 0.89214 1.03578 1.19269 0.96386 0.97753 0.94491 1.21013 1.01774 0.98509 0.93650 1.17861 0.97482 0.99566 0.79644 1.91491 1.91943 1.92735 1.36108 1.21282 0.95762 1.01018 0.95520 1.21282 1.00844 0.97732 0.93684 1.17689 0.95949 0.99125 0.80232 1.91480 1.91531 1.92911 1.35593 1.20810 0.84253 0.95041 0.95253 1.44248 1.02122 1.65452 1.19906 1.19383 0.95428 1.35544 0.86218 0.90400 1.25757 0.98904 1.01242 0.99005 1.70171 1.26111 1.46089 1.16131 0.85639 0.78624 0.79636 0.78458 1.19740 1.23503 1.20151 0.90690 0.94838 0.92656 0.91401 0.89283 0.91291 0.89605 0.75371 0.84593 0.85785 0.84629 0.80607 0.80465 0.93577 0.99104 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.95 71.98 0.57 -3.59 16 2 C 0.15 5.63 3.50 44.97 0.16 5.78 16 3 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 4 C -0.12 -3.17 5.21 30.67 0.16 -3.01 16 5 C -0.11 -3.11 5.59 30.62 0.17 -2.94 16 6 C 0.13 4.84 2.81 45.06 0.13 4.96 16 7 H 0.06 2.42 7.58 -2.39 -0.02 2.41 16 8 N -0.69 -22.94 4.92 -442.19 -2.17 -25.12 16 9 C 0.51 18.37 7.79 87.66 0.68 19.06 16 10 O -0.59 -26.93 15.70 -3.03 -0.05 -26.98 16 11 C -0.10 -2.62 5.60 29.11 0.16 -2.46 16 12 C -0.08 -2.20 4.38 -19.83 -0.09 -2.28 16 13 C -0.13 -3.84 9.66 22.31 0.22 -3.62 16 14 C 0.07 1.98 7.30 22.37 0.16 2.14 16 15 F -0.14 -4.10 17.27 44.97 0.78 -3.32 16 16 C -0.12 -2.39 10.02 22.31 0.22 -2.17 16 17 C -0.12 -2.36 10.02 22.31 0.22 -2.13 16 18 C 0.09 2.31 7.24 22.37 0.16 2.47 16 19 F -0.14 -3.56 16.56 44.97 0.74 -2.82 16 20 C 0.17 8.51 4.88 86.35 0.42 8.93 16 21 N -0.59 -27.77 2.90 -675.27 -1.96 -29.73 16 22 C -0.24 -12.19 8.58 84.03 0.72 -11.47 16 23 H 0.08 3.82 6.23 -2.91 -0.02 3.81 16 24 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 25 N -0.94 -57.88 11.23 21.65 0.24 -57.64 16 26 Si 0.95 45.67 29.58 68.60 2.03 47.70 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.25 7.67 -2.39 -0.02 1.23 16 32 H 0.05 1.76 7.40 -2.39 -0.02 1.74 16 33 H 0.07 1.69 6.40 -2.39 -0.02 1.68 16 34 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 11.11 6.77 -92.71 -0.63 10.48 16 38 H 0.14 2.66 7.79 -2.39 -0.02 2.64 16 39 H 0.12 2.94 8.05 -2.39 -0.02 2.92 16 40 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.05 2.72 6.15 -2.39 -0.01 2.71 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 45 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -74.09 370.31 4.50 -69.58 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.40 Total: 21.28 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.50 Total: 7.04 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -3.89 Total: -112.48 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.52 Total: -6.14 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.09 4.50 -69.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071775598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.696 kcal (2) G-P(sol) polarization free energy of solvation -74.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds