Wall clock time and date at job start Tue Mar 31 2020 21:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58290 * 2 1 4 4 C 1.53187 * 109.59009 * 120.28545 * 2 1 3 5 5 C 1.53043 * 109.31296 * 174.42266 * 4 2 1 6 6 C 1.53035 * 109.53832 * 298.63223 * 5 4 2 7 7 H 1.09002 * 109.50181 * 301.38531 * 6 5 4 8 8 N 1.46498 * 109.50043 * 181.31701 * 6 5 4 9 9 C 1.34768 * 120.00293 * 155.00237 * 8 6 5 10 10 O 1.21284 * 120.00100 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00236 * 180.27927 * 9 8 6 12 12 C 1.50699 * 109.47399 * 179.72161 * 11 9 8 13 13 C 1.38257 * 119.96504 * 89.99919 * 12 11 9 14 14 C 1.38212 * 120.07411 * 179.97438 * 13 12 11 15 15 C 1.38409 * 119.99909 * 0.02562 * 14 13 12 16 16 F 1.35095 * 120.03536 * 179.97438 * 15 14 13 17 17 C 1.38657 * 119.92946 * 359.97438 * 15 14 13 18 18 F 1.35099 * 120.03647 * 180.02562 * 17 15 14 19 19 C 1.38208 * 119.96797 * 269.72265 * 12 11 9 20 20 C 1.53191 * 109.31002 * 61.36522 * 6 5 4 21 21 N 1.46922 * 108.78009 * 305.36363 * 20 6 5 22 22 C 1.36939 * 120.63323 * 233.58959 * 21 20 6 23 23 H 1.08005 * 119.99711 * 150.89032 * 22 21 20 24 24 C 1.38809 * 119.99870 * 330.88680 * 22 21 20 25 25 N 1.31621 * 119.99837 * 160.75099 * 24 22 21 26 26 Si 1.86795 * 120.00028 * 340.74986 * 24 22 21 27 27 H 1.48504 * 109.47319 * 92.28144 * 26 24 22 28 28 H 1.48500 * 109.47300 * 212.27744 * 26 24 22 29 29 H 1.48502 * 109.47435 * 332.28001 * 26 24 22 30 30 H 1.09002 * 109.47263 * 299.71118 * 1 2 3 31 31 H 1.09000 * 109.47733 * 59.71738 * 1 2 3 32 32 H 1.08999 * 109.47196 * 179.71800 * 1 2 3 33 33 H 1.08998 * 109.50063 * 54.46674 * 4 2 1 34 34 H 1.09006 * 109.52455 * 294.39156 * 4 2 1 35 35 H 1.09002 * 109.45407 * 178.61563 * 5 4 2 36 36 H 1.08998 * 109.44807 * 58.65366 * 5 4 2 37 37 H 0.97003 * 119.99493 * 335.00454 * 8 6 5 38 38 H 1.09000 * 109.47062 * 299.72223 * 11 9 8 39 39 H 1.09001 * 109.47361 * 59.71997 * 11 9 8 40 40 H 1.08007 * 119.96248 * 359.97438 * 13 12 11 41 41 H 1.08000 * 120.00228 * 179.97438 * 14 13 12 42 42 H 1.08007 * 119.99698 * 0.02562 * 19 12 11 43 43 H 1.09004 * 109.58662 * 65.15576 * 20 6 5 44 44 H 1.09005 * 109.58581 * 185.57469 * 20 6 5 45 45 H 0.97000 * 119.99728 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 3.5675 -0.8465 1.1710 6 6 3.9569 -1.6657 -0.0615 7 1 3.4988 -2.6530 -0.0018 8 7 5.4142 -1.8054 -0.1155 9 6 5.9676 -2.8489 -0.7644 10 8 5.2592 -3.6727 -1.3033 11 6 7.4666 -2.9960 -0.8145 12 6 7.8239 -4.2390 -1.5880 13 6 8.0163 -4.1700 -2.9554 14 6 8.3445 -5.3085 -3.6669 15 6 8.4804 -6.5196 -3.0107 16 9 8.8007 -7.6330 -3.7056 17 6 8.2874 -6.5888 -1.6394 18 9 8.4200 -7.7697 -0.9966 19 6 7.9644 -5.4457 -0.9290 20 6 3.4650 -0.9485 -1.3226 21 7 2.0225 -0.7010 -1.1937 22 6 1.1536 -1.1154 -2.1676 23 1 0.1363 -1.3711 -1.9105 24 6 1.5804 -1.2067 -3.4853 25 7 0.9077 -1.9415 -4.3455 26 14 3.1096 -0.2870 -4.0377 27 1 4.2948 -1.1718 -3.9040 28 1 2.9553 0.1226 -5.4567 29 1 3.2944 0.9193 -3.1915 30 1 -0.3634 0.5093 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7237 1.2935 34 1 1.7660 -0.1647 2.1373 35 1 3.9378 -1.3422 2.0684 36 1 4.0059 0.1489 1.0990 37 1 5.9808 -1.1467 0.3159 38 1 7.9009 -2.1251 -1.3055 39 1 7.8582 -3.0741 0.1997 40 1 7.9100 -3.2253 -3.4681 41 1 8.4942 -5.2534 -4.7351 42 1 7.8178 -5.4975 0.1398 43 1 3.9902 0.0004 -1.4318 44 1 3.6517 -1.5744 -2.1953 45 1 1.2057 -2.0050 -5.2664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071776627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:35 Heat of formation + Delta-G solvation = -104.772009 kcal Electronic energy + Delta-G solvation = -29581.263194 eV Core-core repulsion = 25234.148548 eV Total energy + Delta-G solvation = -4347.114645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.57388 -49.65968 -41.25086 -40.05882 -39.13822 -36.03940 -34.64289 -33.78683 -32.57636 -32.17781 -31.81991 -28.79013 -27.60974 -26.44926 -24.49164 -24.33339 -23.33320 -22.16169 -21.52089 -20.83703 -19.05809 -18.52324 -18.27410 -18.19865 -17.98984 -17.51302 -17.36380 -16.66594 -16.41655 -16.08704 -16.00314 -15.61304 -15.40357 -15.31653 -15.16597 -15.00518 -14.81857 -14.60096 -14.39046 -14.10136 -13.80450 -13.41087 -13.11626 -13.03432 -12.96003 -12.79177 -12.64816 -12.49612 -12.46834 -12.29527 -12.05282 -11.74232 -11.67104 -11.39074 -11.28882 -10.89130 -10.73460 -10.11453 -10.08565 -9.70741 -8.84286 -8.14669 -5.46881 -0.20351 -0.03617 1.26311 1.33753 1.43712 1.69989 2.04348 2.42435 2.48295 2.73354 3.10463 3.22576 3.36575 3.42123 3.56840 3.84478 3.95086 4.02835 4.06432 4.07500 4.15664 4.29320 4.39015 4.44960 4.56193 4.62410 4.68844 4.70575 4.80359 4.84907 4.86545 4.89721 4.97032 5.01101 5.02154 5.15977 5.19563 5.28886 5.29787 5.50375 5.52829 5.66584 5.68531 5.92535 6.19413 6.66014 6.95491 7.39509 7.67316 8.05213 9.05112 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.003251 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.062260 B = 8609.990354 C = 9672.897060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.157 3.843 3 H 0.048 0.952 4 C -0.122 4.122 5 C -0.106 4.106 6 C 0.136 3.864 7 H 0.050 0.950 8 N -0.710 5.710 9 C 0.500 3.500 10 O -0.585 6.585 11 C -0.091 4.091 12 C -0.051 4.051 13 C -0.091 4.091 14 C -0.125 4.125 15 C 0.044 3.956 16 F -0.141 7.141 17 C 0.047 3.953 18 F -0.140 7.140 19 C -0.112 4.112 20 C 0.119 3.881 21 N -0.615 5.615 22 C -0.239 4.239 23 H 0.062 0.938 24 C -0.041 4.041 25 N -0.961 5.961 26 Si 0.947 3.053 27 H -0.289 1.289 28 H -0.314 1.314 29 H -0.252 1.252 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.421 0.579 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.784 2.912 13.638 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.065 0.935 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.068 0.932 8 N -0.363 5.363 9 C 0.287 3.713 10 O -0.465 6.465 11 C -0.130 4.130 12 C -0.052 4.052 13 C -0.109 4.109 14 C -0.143 4.143 15 C 0.024 3.976 16 F -0.120 7.120 17 C 0.027 3.973 18 F -0.119 7.119 19 C -0.130 4.130 20 C -0.007 4.007 21 N -0.340 5.340 22 C -0.368 4.368 23 H 0.080 0.920 24 C -0.235 4.235 25 N -0.608 5.608 26 Si 0.777 3.223 27 H -0.216 1.216 28 H -0.243 1.243 29 H -0.176 1.176 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.259 0.741 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.265 2.221 13.144 23.427 hybrid contribution 0.326 -0.592 -1.220 1.394 sum 19.591 1.628 11.924 22.992 Atomic orbital electron populations 1.21764 0.95285 1.00736 1.01220 1.20871 0.93977 0.94134 0.85719 0.93467 1.21977 0.95200 1.00703 0.98265 1.21658 0.96450 1.00555 0.95716 1.21302 0.80145 0.99080 0.96552 0.93202 1.45892 1.07086 1.27445 1.55876 1.21358 0.91850 0.80692 0.77369 1.90818 1.65282 1.43913 1.46440 1.20806 0.89891 0.97253 1.05064 1.19504 0.97038 0.94603 0.94028 1.21336 0.96607 0.99375 0.93580 1.21316 1.00677 0.89949 1.02378 1.17982 1.06379 0.84543 0.88740 1.91483 1.90579 1.50958 1.78953 1.17876 1.07170 0.82885 0.89371 1.91488 1.93820 1.45019 1.81539 1.21151 0.99765 0.89947 1.02177 1.21657 0.84812 0.96937 0.97280 1.44565 1.01946 1.66270 1.21261 1.18898 0.95236 1.36068 0.86641 0.92009 1.25975 1.00965 1.00177 0.96349 1.69969 1.43990 1.42020 1.04812 0.85886 0.80371 0.80196 0.75897 1.21623 1.24287 1.17603 0.89775 0.94409 0.94679 0.93665 0.88088 0.89118 0.89425 0.74096 0.83860 0.83175 0.82535 0.81778 0.81818 0.94472 0.94762 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.94 71.98 0.57 -4.07 16 2 C 0.16 5.52 3.50 44.97 0.16 5.68 16 3 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -3.25 5.37 30.67 0.16 -3.09 16 5 C -0.11 -2.39 5.35 30.62 0.16 -2.22 16 6 C 0.14 4.35 2.61 45.07 0.12 4.47 16 7 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 8 N -0.71 -16.21 5.08 -442.18 -2.25 -18.45 16 9 C 0.50 13.23 7.79 87.66 0.68 13.91 16 10 O -0.59 -23.72 15.70 -3.04 -0.05 -23.77 16 11 C -0.09 -1.27 5.83 29.10 0.17 -1.10 16 12 C -0.05 -1.02 4.37 -19.87 -0.09 -1.10 16 13 C -0.09 -1.87 9.70 22.27 0.22 -1.66 16 14 C -0.12 -2.73 10.02 22.30 0.22 -2.51 16 15 C 0.04 1.13 7.31 22.41 0.16 1.29 16 16 F -0.14 -3.93 17.18 44.97 0.77 -3.15 16 17 C 0.05 1.21 7.31 22.41 0.16 1.37 16 18 F -0.14 -3.84 17.18 44.97 0.77 -3.07 16 19 C -0.11 -2.38 9.68 22.30 0.22 -2.17 16 20 C 0.12 5.00 3.77 86.36 0.33 5.33 16 21 N -0.61 -28.38 2.75 -675.23 -1.86 -30.24 16 22 C -0.24 -13.68 9.05 84.03 0.76 -12.92 16 23 H 0.06 3.83 6.39 -2.91 -0.02 3.81 16 24 C -0.04 -2.47 5.24 84.86 0.44 -2.03 16 25 N -0.96 -63.32 13.97 21.65 0.30 -63.02 16 26 Si 0.95 48.43 24.34 68.60 1.67 50.10 16 27 H -0.29 -14.59 6.63 99.48 0.66 -13.93 16 28 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16 29 H -0.25 -11.82 6.63 99.48 0.66 -11.16 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.49 7.66 -2.39 -0.02 1.47 16 32 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 5.22 8.60 -92.71 -0.80 4.42 16 38 H 0.14 1.09 8.08 -2.39 -0.02 1.07 16 39 H 0.15 0.86 8.08 -2.39 -0.02 0.84 16 40 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 43 H 0.04 1.45 7.03 -2.39 -0.02 1.43 16 44 H 0.03 1.75 4.62 -2.38 -0.01 1.74 16 45 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -85.32 368.19 3.95 -81.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.13 Total: 11.05 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.45 Total: -0.81 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -3.80 Total: -111.71 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 1.55 Total: -6.22 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.67 Total: 50.10 kcal Total: -85.32 3.95 -81.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.404 kcal (2) G-P(sol) polarization free energy of solvation -85.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds