Wall clock time and date at job start Tue Mar 31 2020 21:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58435 * 2 1 4 4 C 1.53185 * 109.59009 * 239.71308 * 2 1 3 5 5 C 1.53040 * 109.31355 * 185.43693 * 4 2 1 6 6 C 1.53041 * 109.54037 * 61.36443 * 5 4 2 7 7 H 1.09007 * 109.49549 * 58.61967 * 6 5 4 8 8 N 1.46493 * 109.50005 * 178.68253 * 6 5 4 9 9 C 1.34770 * 120.00309 * 205.00027 * 8 6 5 10 10 O 1.21280 * 119.99940 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00146 * 180.02562 * 9 8 6 12 12 C 1.50705 * 109.47167 * 179.97438 * 11 9 8 13 13 C 1.38258 * 119.96085 * 89.99963 * 12 11 9 14 14 C 1.38214 * 120.07070 * 180.02562 * 13 12 11 15 15 C 1.38412 * 119.99782 * 359.97146 * 14 13 12 16 16 F 1.35100 * 120.03500 * 179.97438 * 15 14 13 17 17 C 1.38648 * 119.93160 * 0.02562 * 15 14 13 18 18 F 1.35101 * 120.03863 * 180.02562 * 17 15 14 19 19 C 1.38212 * 119.96554 * 269.72621 * 12 11 9 20 20 C 1.53188 * 109.31163 * 298.64083 * 6 5 4 21 21 N 1.46921 * 108.78013 * 54.63249 * 20 6 5 22 22 C 1.36939 * 120.63249 * 126.39423 * 21 20 6 23 23 H 1.07999 * 119.99390 * 209.51882 * 22 21 20 24 24 C 1.38809 * 119.99819 * 29.51811 * 22 21 20 25 25 N 1.31619 * 120.00317 * 16.13758 * 24 22 21 26 26 Si 1.86801 * 119.99573 * 196.14013 * 24 22 21 27 27 H 1.48508 * 109.46970 * 94.02551 * 26 24 22 28 28 H 1.48501 * 109.47059 * 214.02168 * 26 24 22 29 29 H 1.48496 * 109.47367 * 334.02541 * 26 24 22 30 30 H 1.09005 * 109.47016 * 180.28355 * 1 2 3 31 31 H 1.08996 * 109.47518 * 300.28499 * 1 2 3 32 32 H 1.09001 * 109.46645 * 60.28498 * 1 2 3 33 33 H 1.09005 * 109.49810 * 65.48511 * 4 2 1 34 34 H 1.08999 * 109.52547 * 305.40710 * 4 2 1 35 35 H 1.09001 * 109.45938 * 301.34406 * 5 4 2 36 36 H 1.09000 * 109.45800 * 181.39000 * 5 4 2 37 37 H 0.97007 * 120.00111 * 25.00105 * 8 6 5 38 38 H 1.09002 * 109.47243 * 60.00167 * 11 9 8 39 39 H 1.09002 * 109.47405 * 299.99622 * 11 9 8 40 40 H 1.08000 * 119.96868 * 359.97438 * 13 12 11 41 41 H 1.07997 * 120.00538 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.00057 * 0.02562 * 19 12 11 43 43 H 1.09001 * 109.58678 * 174.42120 * 20 6 5 44 44 H 1.09008 * 109.58464 * 294.84375 * 20 6 5 45 45 H 0.97001 * 120.00256 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5679 -0.8434 -1.1727 6 6 3.9604 -1.6608 0.0602 7 1 3.5042 -2.6490 0.0018 8 7 5.4180 -1.7975 0.1125 9 6 5.9743 -2.8393 0.7616 10 8 5.2682 -3.6641 1.3020 11 6 7.4738 -2.9796 0.8159 12 6 7.8346 -4.2180 1.5952 13 6 7.9763 -5.4282 0.9417 14 6 8.3067 -6.5655 1.6543 15 6 8.4965 -6.4935 3.0234 16 9 8.8189 -7.6049 3.7207 17 6 8.3544 -5.2800 3.6787 18 9 8.5397 -5.2072 5.0150 19 6 8.0289 -4.1418 2.9614 20 6 3.4684 -0.9435 1.3212 21 7 2.0253 -0.6991 1.1937 22 6 1.1584 -1.1147 2.1689 23 1 0.1432 -1.3789 1.9119 24 6 1.5844 -1.1964 3.4874 25 7 2.6907 -0.5887 3.8605 26 14 0.5877 -2.1690 4.7324 27 1 1.1230 -3.5513 4.8239 28 1 0.6804 -1.5134 6.0616 29 1 -0.8326 -2.2158 4.3014 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 1.7639 -0.1655 -2.1371 34 1 1.6050 -1.7246 -1.2926 35 1 4.0046 0.1528 -1.1020 36 1 3.9382 -1.3391 -2.0701 37 1 5.9829 -1.1380 -0.3201 38 1 7.9031 -2.1051 1.3050 39 1 7.8682 -3.0596 -0.1971 40 1 7.8280 -5.4851 -0.1265 41 1 8.4167 -7.5103 1.1428 42 1 7.9218 -3.1951 3.4701 43 1 3.6575 -1.5683 2.1942 44 1 3.9919 0.0065 1.4289 45 1 2.9882 -0.6455 4.7820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071776628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:39 Heat of formation + Delta-G solvation = -86.587060 kcal Electronic energy + Delta-G solvation = -29499.142092 eV Core-core repulsion = 25152.816005 eV Total energy + Delta-G solvation = -4346.326087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.50360 -48.57926 -39.97833 -38.77821 -37.51874 -34.41312 -32.85562 -32.70994 -30.95916 -30.66072 -29.85778 -27.66460 -25.83586 -24.87075 -23.39739 -22.44409 -22.14884 -20.70625 -20.01592 -19.24214 -18.02010 -17.28980 -17.06287 -16.84329 -16.42266 -16.28996 -15.68883 -15.06261 -14.99158 -14.86239 -14.56758 -14.23964 -14.03231 -13.91504 -13.80871 -13.52062 -13.38797 -13.13842 -12.76050 -12.44772 -12.21447 -12.01280 -11.94526 -11.78509 -11.45297 -11.35332 -11.13255 -10.88464 -10.71566 -10.53846 -10.40244 -10.25845 -9.96265 -9.78812 -9.46900 -9.44536 -9.14945 -8.70307 -8.55602 -8.41354 -6.61323 -5.74393 -3.18558 0.78190 0.90407 2.96326 3.11889 3.43614 3.50253 3.52010 3.63681 3.70686 4.23411 4.35667 4.44108 4.54429 4.83348 4.96242 5.03759 5.18046 5.30810 5.32887 5.36043 5.48186 5.55827 5.60392 5.66439 5.71064 5.78420 5.86025 5.95416 6.08450 6.20461 6.25701 6.29069 6.37990 6.44220 6.48655 6.61242 6.63188 6.72788 6.92157 7.03766 7.11845 7.30593 7.71789 7.85188 7.90143 8.50021 8.60808 9.24897 9.89118 10.44254 11.33854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.003361 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.486419 B = 8329.698900 C =10000.860963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.721 5.721 9 C 0.509 3.491 10 O -0.524 6.524 11 C -0.104 4.104 12 C -0.040 4.040 13 C -0.087 4.087 14 C -0.125 4.125 15 C 0.062 3.938 16 F -0.132 7.132 17 C 0.071 3.929 18 F -0.129 7.129 19 C -0.109 4.109 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.900 5.900 26 Si 0.898 3.102 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.092 0.908 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -4.297 -10.946 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.372 5.372 9 C 0.293 3.707 10 O -0.399 6.399 11 C -0.144 4.144 12 C -0.041 4.041 13 C -0.105 4.105 14 C -0.144 4.144 15 C 0.041 3.959 16 F -0.111 7.111 17 C 0.050 3.950 18 F -0.108 7.108 19 C -0.128 4.128 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.191 4.191 25 N -0.544 5.544 26 Si 0.728 3.272 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.956 -4.924 -10.283 17.258 hybrid contribution -0.050 -0.317 0.960 1.012 sum 12.906 -5.240 -9.323 16.761 Atomic orbital electron populations 1.21798 0.96000 1.01433 1.00169 1.20482 0.93069 0.93531 0.87064 0.95800 1.22048 0.94335 1.01323 0.98921 1.21673 0.97389 0.99621 0.96685 1.21989 0.77798 1.00859 0.98228 0.90066 1.46070 1.08616 1.26646 1.55834 1.20263 0.89522 0.81845 0.79049 1.90792 1.63424 1.41743 1.43924 1.20725 0.94609 0.97080 1.02034 1.19198 0.97309 0.94921 0.92682 1.20909 0.98033 0.90928 1.00662 1.20994 1.01626 1.00561 0.91176 1.17685 1.05563 0.81900 0.90710 1.91513 1.90346 1.50189 1.79034 1.17615 1.05500 0.93693 0.78142 1.91532 1.92874 1.96926 1.29445 1.20984 0.99812 0.97952 0.94035 1.21057 0.83587 0.96815 0.94339 1.44025 1.02604 1.64770 1.19286 1.19150 0.95068 1.38077 0.86049 0.91210 1.25055 0.97844 0.99207 0.96988 1.70004 1.24384 1.43274 1.16721 0.86345 0.79724 0.80206 0.80918 1.21346 1.21811 1.20349 0.92793 0.92018 0.94340 0.92703 0.92097 0.92302 0.93131 0.77463 0.87487 0.87602 0.84370 0.83747 0.83548 0.88948 0.96565 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 2 C 0.17 3.32 3.49 -67.60 -0.24 3.08 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.62 -0.14 -2.22 16 5 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.14 2.60 -67.82 -0.18 1.96 16 7 H 0.08 1.74 7.58 -51.93 -0.39 1.34 16 8 N -0.72 -10.40 5.08 -53.69 -0.27 -10.68 16 9 C 0.51 7.78 7.79 -10.99 -0.09 7.69 16 10 O -0.52 -10.89 15.70 5.56 0.09 -10.80 16 11 C -0.10 -1.03 5.83 -29.03 -0.17 -1.20 16 12 C -0.04 -0.47 4.37 -104.62 -0.46 -0.92 16 13 C -0.09 -0.90 9.70 -39.58 -0.38 -1.28 16 14 C -0.12 -1.32 10.02 -39.53 -0.40 -1.72 16 15 C 0.06 0.80 7.31 -39.37 -0.29 0.51 16 16 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 17 C 0.07 0.99 7.31 -39.36 -0.29 0.70 16 18 F -0.13 -1.95 17.18 2.25 0.04 -1.91 16 19 C -0.11 -1.41 9.68 -39.52 -0.38 -1.79 16 20 C 0.17 3.97 4.86 -3.72 -0.02 3.96 16 21 N -0.58 -14.32 2.99 -164.78 -0.49 -14.81 16 22 C -0.25 -6.93 8.59 -15.06 -0.13 -7.06 16 23 H 0.07 1.86 6.23 -52.49 -0.33 1.54 16 24 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 25 N -0.90 -26.53 11.25 55.49 0.62 -25.91 16 26 Si 0.90 22.55 29.58 -169.99 -5.03 17.52 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.05 1.02 7.41 -51.93 -0.38 0.64 16 31 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 4.14 8.60 -40.82 -0.35 3.79 16 38 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.11 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.09 2.59 6.14 -51.93 -0.32 2.27 16 44 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -33.84 374.72 -8.82 -42.66 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.38 Total: 2.33 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.09 Total: -2.28 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.14 Total: -51.40 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.68 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.84 -8.82 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.924 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds