Wall clock time and date at job start Tue Mar 31 2020 21:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58435 * 2 1 4 4 C 1.53185 * 109.59009 * 239.71308 * 2 1 3 5 5 C 1.53040 * 109.31355 * 185.43693 * 4 2 1 6 6 C 1.53041 * 109.54037 * 61.36443 * 5 4 2 7 7 H 1.09007 * 109.49549 * 58.61967 * 6 5 4 8 8 N 1.46493 * 109.50005 * 178.68253 * 6 5 4 9 9 C 1.34770 * 120.00309 * 205.00027 * 8 6 5 10 10 O 1.21280 * 119.99940 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00146 * 180.02562 * 9 8 6 12 12 C 1.50705 * 109.47167 * 179.97438 * 11 9 8 13 13 C 1.38258 * 119.96085 * 89.99963 * 12 11 9 14 14 C 1.38214 * 120.07070 * 180.02562 * 13 12 11 15 15 C 1.38412 * 119.99782 * 359.97146 * 14 13 12 16 16 F 1.35100 * 120.03500 * 179.97438 * 15 14 13 17 17 C 1.38648 * 119.93160 * 0.02562 * 15 14 13 18 18 F 1.35101 * 120.03863 * 180.02562 * 17 15 14 19 19 C 1.38212 * 119.96554 * 269.72621 * 12 11 9 20 20 C 1.53188 * 109.31163 * 298.64083 * 6 5 4 21 21 N 1.46921 * 108.78013 * 54.63249 * 20 6 5 22 22 C 1.36939 * 120.63249 * 126.39423 * 21 20 6 23 23 H 1.07999 * 119.99390 * 209.51882 * 22 21 20 24 24 C 1.38809 * 119.99819 * 29.51811 * 22 21 20 25 25 N 1.31619 * 120.00317 * 16.13758 * 24 22 21 26 26 Si 1.86801 * 119.99573 * 196.14013 * 24 22 21 27 27 H 1.48508 * 109.46970 * 94.02551 * 26 24 22 28 28 H 1.48501 * 109.47059 * 214.02168 * 26 24 22 29 29 H 1.48496 * 109.47367 * 334.02541 * 26 24 22 30 30 H 1.09005 * 109.47016 * 180.28355 * 1 2 3 31 31 H 1.08996 * 109.47518 * 300.28499 * 1 2 3 32 32 H 1.09001 * 109.46645 * 60.28498 * 1 2 3 33 33 H 1.09005 * 109.49810 * 65.48511 * 4 2 1 34 34 H 1.08999 * 109.52547 * 305.40710 * 4 2 1 35 35 H 1.09001 * 109.45938 * 301.34406 * 5 4 2 36 36 H 1.09000 * 109.45800 * 181.39000 * 5 4 2 37 37 H 0.97007 * 120.00111 * 25.00105 * 8 6 5 38 38 H 1.09002 * 109.47243 * 60.00167 * 11 9 8 39 39 H 1.09002 * 109.47405 * 299.99622 * 11 9 8 40 40 H 1.08000 * 119.96868 * 359.97438 * 13 12 11 41 41 H 1.07997 * 120.00538 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.00057 * 0.02562 * 19 12 11 43 43 H 1.09001 * 109.58678 * 174.42120 * 20 6 5 44 44 H 1.09008 * 109.58464 * 294.84375 * 20 6 5 45 45 H 0.97001 * 120.00256 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5679 -0.8434 -1.1727 6 6 3.9604 -1.6608 0.0602 7 1 3.5042 -2.6490 0.0018 8 7 5.4180 -1.7975 0.1125 9 6 5.9743 -2.8393 0.7616 10 8 5.2682 -3.6641 1.3020 11 6 7.4738 -2.9796 0.8159 12 6 7.8346 -4.2180 1.5952 13 6 7.9763 -5.4282 0.9417 14 6 8.3067 -6.5655 1.6543 15 6 8.4965 -6.4935 3.0234 16 9 8.8189 -7.6049 3.7207 17 6 8.3544 -5.2800 3.6787 18 9 8.5397 -5.2072 5.0150 19 6 8.0289 -4.1418 2.9614 20 6 3.4684 -0.9435 1.3212 21 7 2.0253 -0.6991 1.1937 22 6 1.1584 -1.1147 2.1689 23 1 0.1432 -1.3789 1.9119 24 6 1.5844 -1.1964 3.4874 25 7 2.6907 -0.5887 3.8605 26 14 0.5877 -2.1690 4.7324 27 1 1.1230 -3.5513 4.8239 28 1 0.6804 -1.5134 6.0616 29 1 -0.8326 -2.2158 4.3014 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8926 33 1 1.7639 -0.1655 -2.1371 34 1 1.6050 -1.7246 -1.2926 35 1 4.0046 0.1528 -1.1020 36 1 3.9382 -1.3391 -2.0701 37 1 5.9829 -1.1380 -0.3201 38 1 7.9031 -2.1051 1.3050 39 1 7.8682 -3.0596 -0.1971 40 1 7.8280 -5.4851 -0.1265 41 1 8.4167 -7.5103 1.1428 42 1 7.9218 -3.1951 3.4701 43 1 3.6575 -1.5683 2.1942 44 1 3.9919 0.0065 1.4289 45 1 2.9882 -0.6455 4.7820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071776628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:38 Heat of formation + Delta-G solvation = -108.122539 kcal Electronic energy + Delta-G solvation = -29500.075940 eV Core-core repulsion = 25152.816005 eV Total energy + Delta-G solvation = -4347.259935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.56160 -49.64863 -41.13931 -39.93313 -38.98425 -35.92627 -34.63941 -33.72919 -32.13843 -31.82119 -31.67814 -28.71806 -27.55135 -26.50595 -24.32380 -24.02792 -23.30723 -22.12137 -21.34748 -20.80704 -19.02761 -18.35531 -18.24148 -18.10818 -17.93530 -17.36767 -17.27798 -16.62997 -16.08619 -16.07936 -15.75935 -15.57357 -15.41408 -15.19416 -15.02990 -15.00240 -14.78650 -14.42443 -14.09869 -14.08250 -13.51590 -13.14367 -13.01702 -12.93005 -12.79672 -12.74077 -12.66934 -12.55427 -12.27320 -12.26256 -12.09738 -11.95077 -11.63760 -11.37748 -11.10899 -10.80116 -10.54856 -10.08968 -9.97812 -9.67270 -8.61403 -7.86658 -5.31667 -0.16695 -0.00656 1.37709 1.43058 1.48271 1.78504 2.12342 2.46615 2.58807 2.76541 3.25511 3.30136 3.45612 3.60495 3.69377 3.96379 4.01236 4.09915 4.12904 4.14063 4.30437 4.40284 4.45170 4.59956 4.66330 4.73464 4.75026 4.81589 4.85507 4.91360 4.92772 5.00653 5.02355 5.10781 5.22081 5.32983 5.35204 5.38924 5.54990 5.56359 5.63409 5.70868 5.72581 5.84870 6.41155 6.74829 7.16432 7.47460 7.91167 8.39149 9.17987 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.003361 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.486419 B = 8329.698900 C =10000.860963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.132 3.868 7 H 0.048 0.952 8 N -0.708 5.708 9 C 0.503 3.497 10 O -0.586 6.586 11 C -0.091 4.091 12 C -0.049 4.049 13 C -0.079 4.079 14 C -0.118 4.118 15 C 0.044 3.956 16 F -0.141 7.141 17 C 0.040 3.960 18 F -0.146 7.146 19 C -0.124 4.124 20 C 0.179 3.821 21 N -0.604 5.604 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.050 4.050 25 N -0.931 5.931 26 Si 0.949 3.051 27 H -0.300 1.300 28 H -0.294 1.294 29 H -0.260 1.260 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.416 0.584 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.144 0.856 43 H 0.038 0.962 44 H -0.002 1.002 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.003 -3.959 -15.164 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.067 0.933 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.466 6.466 11 C -0.130 4.130 12 C -0.050 4.050 13 C -0.097 4.097 14 C -0.136 4.136 15 C 0.024 3.976 16 F -0.120 7.120 17 C 0.020 3.980 18 F -0.125 7.125 19 C -0.143 4.143 20 C 0.052 3.948 21 N -0.329 5.329 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.245 4.245 25 N -0.578 5.578 26 Si 0.779 3.221 27 H -0.228 1.228 28 H -0.221 1.221 29 H -0.184 1.184 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.253 0.747 38 H 0.148 0.852 39 H 0.175 0.825 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.162 0.838 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.544 -4.546 -14.559 20.398 hybrid contribution -0.260 -0.387 2.202 2.251 sum 13.285 -4.933 -12.357 18.802 Atomic orbital electron populations 1.21740 0.94998 1.01050 1.00991 1.20805 0.94127 0.93413 0.86850 0.96068 1.21951 0.95054 1.00732 0.98107 1.21635 0.96670 1.00069 0.96027 1.21429 0.79960 0.98834 0.97232 0.93333 1.45869 1.07252 1.27234 1.55682 1.21246 0.91662 0.80737 0.77293 1.90777 1.65433 1.44053 1.46335 1.20788 0.90094 0.97173 1.04959 1.19513 0.96865 0.96449 0.92141 1.21382 0.95997 0.89946 1.02368 1.21395 1.00054 1.02194 0.89990 1.18003 1.06488 0.81320 0.91826 1.91482 1.90563 1.50464 1.79467 1.17969 1.07417 0.94875 0.77763 1.91475 1.93248 1.97077 1.30655 1.21148 1.00405 0.97622 0.95123 1.20779 0.83546 0.95267 0.95172 1.44338 1.02695 1.65677 1.20141 1.19471 0.95510 1.36243 0.86690 0.90942 1.25705 0.99111 1.00898 0.98795 1.70146 1.26049 1.45313 1.16267 0.85512 0.79485 0.78069 0.79081 1.22836 1.22057 1.18434 0.93670 0.94508 0.90242 0.88697 0.93089 0.90791 0.89307 0.74651 0.85232 0.82520 0.80738 0.80718 0.83835 0.94314 0.98364 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.95 71.98 0.57 -4.06 16 2 C 0.15 5.93 3.49 44.97 0.16 6.08 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.50 5.37 30.67 0.16 -3.33 16 5 C -0.11 -2.82 5.35 30.62 0.16 -2.65 16 6 C 0.13 4.73 2.60 45.07 0.12 4.85 16 7 H 0.05 2.08 7.58 -2.38 -0.02 2.07 16 8 N -0.71 -18.95 5.08 -442.18 -2.25 -21.20 16 9 C 0.50 14.68 7.79 87.66 0.68 15.36 16 10 O -0.59 -24.82 15.70 -3.03 -0.05 -24.86 16 11 C -0.09 -1.50 5.83 29.10 0.17 -1.33 16 12 C -0.05 -1.05 4.37 -19.86 -0.09 -1.14 16 13 C -0.08 -1.40 9.70 22.27 0.22 -1.18 16 14 C -0.12 -2.28 10.02 22.31 0.22 -2.06 16 15 C 0.04 1.15 7.31 22.41 0.16 1.31 16 16 F -0.14 -3.94 17.18 44.97 0.77 -3.17 16 17 C 0.04 1.16 7.31 22.41 0.16 1.33 16 18 F -0.15 -4.76 17.18 44.97 0.77 -3.98 16 19 C -0.12 -3.29 9.68 22.31 0.22 -3.07 16 20 C 0.18 8.67 4.86 86.36 0.42 9.09 16 21 N -0.60 -30.11 2.99 -675.23 -2.02 -32.13 16 22 C -0.25 -13.92 8.59 84.03 0.72 -13.19 16 23 H 0.07 3.93 6.23 -2.91 -0.02 3.91 16 24 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 25 N -0.93 -57.71 11.25 21.65 0.24 -57.46 16 26 Si 0.95 48.11 29.58 68.60 2.03 50.14 16 27 H -0.30 -15.75 7.11 99.48 0.71 -15.05 16 28 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 29 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 30 H 0.04 1.66 7.41 -2.38 -0.02 1.64 16 31 H 0.04 1.45 7.67 -2.39 -0.02 1.44 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 7.19 8.60 -92.70 -0.80 6.39 16 38 H 0.13 1.63 8.08 -2.39 -0.02 1.61 16 39 H 0.16 1.05 8.09 -2.39 -0.02 1.03 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.04 2.29 6.14 -2.39 -0.01 2.27 16 44 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 45 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -81.94 374.72 4.21 -77.73 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.22 Total: 11.43 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.48 Total: 3.51 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.02 Total: -110.79 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.55 Total: -7.15 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -81.94 4.21 -77.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.394 kcal (2) G-P(sol) polarization free energy of solvation -81.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds