Wall clock time and date at job start Tue Mar 31 2020 21:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.70138 * 2 1 4 4 C 1.53191 * 109.58169 * 120.35555 * 2 1 3 5 5 C 1.53039 * 109.31072 * 174.42409 * 4 2 1 6 6 C 1.53044 * 109.53796 * 298.63407 * 5 4 2 7 7 H 1.09002 * 109.49621 * 181.31620 * 6 5 4 8 8 N 1.46499 * 109.52270 * 301.39657 * 6 5 4 9 9 C 1.34773 * 120.00236 * 204.92079 * 8 6 5 10 10 O 1.21283 * 120.00051 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00292 * 180.02562 * 9 8 6 12 12 C 1.50701 * 109.47404 * 179.97438 * 11 9 8 13 13 C 1.38264 * 119.96293 * 269.72929 * 12 11 9 14 14 C 1.38211 * 120.06706 * 179.72585 * 13 12 11 15 15 C 1.38408 * 120.00161 * 0.54191 * 14 13 12 16 16 F 1.35098 * 120.03389 * 179.74882 * 15 14 13 17 17 C 1.38643 * 119.93031 * 359.72994 * 15 14 13 18 18 F 1.35099 * 120.03926 * 180.02562 * 17 15 14 19 19 C 1.38210 * 119.96671 * 89.99835 * 12 11 9 20 20 C 1.53191 * 109.31471 * 61.36557 * 6 5 4 21 21 N 1.46923 * 109.58783 * 239.64347 * 2 1 3 22 22 C 1.36942 * 120.62922 * 6.62659 * 21 2 1 23 23 H 1.07991 * 120.00160 * 329.26350 * 22 21 2 24 24 C 1.38808 * 119.99757 * 149.26623 * 22 21 2 25 25 N 1.31623 * 120.00215 * 345.80432 * 24 22 21 26 26 Si 1.86801 * 119.99947 * 165.80179 * 24 22 21 27 27 H 1.48498 * 109.46960 * 90.00206 * 26 24 22 28 28 H 1.48506 * 109.47134 * 209.99749 * 26 24 22 29 29 H 1.48493 * 109.47269 * 330.00002 * 26 24 22 30 30 H 1.08992 * 109.47057 * 180.35328 * 1 2 3 31 31 H 1.08996 * 109.47077 * 300.36226 * 1 2 3 32 32 H 1.09000 * 109.46597 * 60.35504 * 1 2 3 33 33 H 1.09002 * 109.49562 * 294.36762 * 4 2 1 34 34 H 1.08992 * 109.50039 * 54.43925 * 4 2 1 35 35 H 1.09003 * 109.46429 * 178.61142 * 5 4 2 36 36 H 1.09002 * 109.46389 * 58.65247 * 5 4 2 37 37 H 0.97005 * 119.99584 * 24.91472 * 8 6 5 38 38 H 1.08999 * 109.47090 * 299.99931 * 11 9 8 39 39 H 1.08998 * 109.47078 * 59.99633 * 11 9 8 40 40 H 1.08001 * 119.96171 * 359.97438 * 13 12 11 41 41 H 1.08007 * 119.99407 * 180.27298 * 14 13 12 42 42 H 1.08000 * 119.99691 * 0.02562 * 19 12 11 43 43 H 1.08996 * 109.58882 * 65.14889 * 20 6 5 44 44 H 1.08991 * 109.58731 * 185.43823 * 20 6 5 45 45 H 0.96998 * 120.00146 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1703 6 6 3.9569 -1.6657 -0.0634 7 1 5.0412 -1.7696 -0.1035 8 7 3.3411 -2.9927 0.0145 9 6 3.8972 -4.0330 -0.6374 10 8 4.9072 -3.8705 -1.2889 11 6 3.2635 -5.3979 -0.5578 12 6 4.0738 -6.3762 -1.3686 13 6 3.7788 -6.5772 -2.7044 14 6 4.5241 -7.4696 -3.4515 15 6 5.5600 -8.1715 -2.8599 16 9 6.2857 -9.0478 -3.5883 17 6 5.8523 -7.9742 -1.5191 18 9 6.8632 -8.6578 -0.9395 19 6 5.1075 -7.0756 -0.7749 20 6 3.4652 -0.9470 -1.3237 21 7 2.0226 -0.6995 -1.1944 22 6 1.1538 -1.1127 -2.1689 23 1 0.1441 -1.3935 -1.9085 24 6 1.5710 -1.1707 -3.4916 25 7 2.6870 -0.5756 -3.8563 26 14 0.5488 -2.0932 -4.7538 27 1 -0.4372 -1.1663 -5.3653 28 1 1.4394 -2.6361 -5.8109 29 1 -0.1684 -3.2106 -4.0889 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3632 0.5083 -0.8932 33 1 1.7660 -0.1667 2.1368 34 1 1.6025 -1.7250 1.2917 35 1 3.9378 -1.3448 2.0670 36 1 4.0061 0.1473 1.0994 37 1 2.5332 -3.1226 0.5354 38 1 3.2333 -5.7244 0.4818 39 1 2.2490 -5.3511 -0.9535 40 1 2.9676 -6.0332 -3.1654 41 1 4.2955 -7.6224 -4.4960 42 1 5.3339 -6.9212 0.2698 43 1 3.9904 0.0019 -1.4316 44 1 3.6542 -1.5707 -2.1973 45 1 2.9787 -0.6165 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071776629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:41 Heat of formation + Delta-G solvation = -85.452291 kcal Electronic energy + Delta-G solvation = -30061.453599 eV Core-core repulsion = 25715.176720 eV Total energy + Delta-G solvation = -4346.276880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.48506 -48.56346 -39.90569 -38.80744 -37.44599 -34.12567 -32.77154 -32.63047 -30.89850 -30.62573 -29.91964 -27.49997 -26.06669 -24.94838 -23.33000 -22.37318 -22.17522 -20.68665 -20.23685 -18.76247 -17.97469 -17.22037 -17.03369 -16.91796 -16.31955 -16.21481 -15.49181 -15.15532 -14.98126 -14.53783 -14.50710 -14.32751 -14.02740 -13.98631 -13.85557 -13.44413 -13.26510 -13.07160 -12.78952 -12.57419 -12.17484 -11.93169 -11.89316 -11.65245 -11.31214 -11.25027 -11.18804 -10.99089 -10.90214 -10.74637 -10.43122 -10.36816 -9.99977 -9.59244 -9.50346 -9.39367 -9.09418 -8.63313 -8.48452 -8.38104 -6.60505 -5.78016 -3.23953 0.85915 0.96830 3.11904 3.23747 3.32906 3.39079 3.41974 3.73560 3.84092 4.26536 4.43662 4.45864 4.58315 4.94120 5.03960 5.19016 5.28110 5.28695 5.33547 5.44415 5.48179 5.49927 5.56457 5.67563 5.77731 5.85175 5.98343 5.99753 6.08515 6.13054 6.30072 6.31860 6.32425 6.41831 6.49779 6.57817 6.66640 6.70395 6.87924 7.02426 7.09786 7.37011 7.67075 7.80277 8.07341 8.46982 8.76821 9.20812 9.84872 10.42334 11.29881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.003696 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.179003 B = 7574.772408 C = 9053.248167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.700 5.700 9 C 0.514 3.486 10 O -0.539 6.539 11 C -0.106 4.106 12 C -0.036 4.036 13 C -0.082 4.082 14 C -0.122 4.122 15 C 0.061 3.939 16 F -0.133 7.133 17 C 0.066 3.934 18 F -0.133 7.133 19 C -0.113 4.113 20 C 0.164 3.836 21 N -0.582 5.582 22 C -0.252 4.252 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.898 5.898 26 Si 0.894 3.106 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.024 0.976 44 H 0.095 0.905 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 -10.347 9.569 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.350 5.350 9 C 0.299 3.701 10 O -0.416 6.416 11 C -0.146 4.146 12 C -0.037 4.037 13 C -0.100 4.100 14 C -0.141 4.141 15 C 0.041 3.959 16 F -0.112 7.112 17 C 0.045 3.955 18 F -0.111 7.111 19 C -0.132 4.132 20 C 0.037 3.963 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.084 0.916 24 C -0.192 4.192 25 N -0.542 5.542 26 Si 0.724 3.276 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.042 0.958 44 H 0.113 0.887 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.065 -10.252 8.917 13.629 hybrid contribution -0.515 -0.669 -0.612 1.043 sum 0.550 -10.922 8.305 13.732 Atomic orbital electron populations 1.21787 0.96124 1.01143 1.00194 1.20468 0.92863 0.93633 0.87243 0.95861 1.22058 0.95132 1.00643 0.99065 1.21687 0.97004 1.00155 0.96800 1.21765 0.96905 0.81873 0.98170 0.90769 1.45819 1.29407 1.08582 1.51213 1.20123 0.84742 0.85601 0.79638 1.90722 1.25297 1.85047 1.40584 1.20720 1.00432 0.92000 1.01458 1.19225 0.95152 0.95213 0.94105 1.21058 0.99697 0.96258 0.92985 1.21050 0.94649 0.97024 1.01384 1.17665 0.95208 0.94558 0.88505 1.91506 1.76241 1.66559 1.76864 1.17561 0.90209 0.97294 0.90389 1.91508 1.57390 1.77961 1.84252 1.20864 0.95440 0.95903 1.00996 1.21140 0.83759 0.96983 0.94415 1.44029 1.02673 1.64812 1.19060 1.19038 0.95335 1.37924 0.85843 0.91579 1.25101 0.97620 0.99395 0.97051 1.69977 1.23548 1.43930 1.16703 0.86443 0.79531 0.79897 0.81734 1.21459 1.21608 1.20565 0.92990 0.94478 0.92056 0.92942 0.92657 0.93090 0.91206 0.77047 0.87991 0.87172 0.84006 0.83672 0.83939 0.95847 0.88714 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.96 37.16 0.30 -2.02 16 2 C 0.16 3.08 3.50 -67.60 -0.24 2.84 16 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.92 5.20 -26.61 -0.14 -2.06 16 5 C -0.12 -1.75 5.59 -26.69 -0.15 -1.90 16 6 C 0.12 2.12 2.81 -67.81 -0.19 1.93 16 7 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 8 N -0.70 -11.13 4.92 -53.69 -0.26 -11.39 16 9 C 0.51 8.49 7.79 -10.99 -0.09 8.41 16 10 O -0.54 -11.25 15.70 5.55 0.09 -11.16 16 11 C -0.11 -1.26 5.83 -29.04 -0.17 -1.43 16 12 C -0.04 -0.47 4.37 -104.62 -0.46 -0.92 16 13 C -0.08 -1.06 9.70 -39.58 -0.38 -1.45 16 14 C -0.12 -1.53 10.02 -39.53 -0.40 -1.92 16 15 C 0.06 0.83 7.31 -39.37 -0.29 0.54 16 16 F -0.13 -1.87 17.18 2.25 0.04 -1.84 16 17 C 0.07 0.89 7.31 -39.37 -0.29 0.60 16 18 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 19 C -0.11 -1.41 9.68 -39.53 -0.38 -1.80 16 20 C 0.16 3.73 4.87 -3.71 -0.02 3.71 16 21 N -0.58 -13.14 2.90 -164.78 -0.48 -13.62 16 22 C -0.25 -6.30 8.55 -15.06 -0.13 -6.43 16 23 H 0.07 1.61 6.26 -52.49 -0.33 1.29 16 24 C 0.01 0.20 4.97 -17.43 -0.09 0.12 16 25 N -0.90 -25.59 11.22 55.49 0.62 -24.96 16 26 Si 0.89 20.88 29.58 -169.99 -5.03 15.85 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.05 0.88 7.44 -51.93 -0.39 0.49 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.78 6.41 -51.93 -0.33 0.45 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.39 5.42 6.78 -40.82 -0.28 5.15 16 38 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 2.56 6.18 -51.93 -0.32 2.24 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -30.93 371.21 -8.71 -39.64 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.21 Total: 5.47 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.10 Total: -1.76 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.12 Total: -49.98 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.93 -8.71 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.814 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds