Wall clock time and date at job start Tue Mar 31 2020 21:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.70138 * 2 1 4 4 C 1.53191 * 109.58169 * 120.35555 * 2 1 3 5 5 C 1.53039 * 109.31072 * 174.42409 * 4 2 1 6 6 C 1.53044 * 109.53796 * 298.63407 * 5 4 2 7 7 H 1.09002 * 109.49621 * 181.31620 * 6 5 4 8 8 N 1.46499 * 109.52270 * 301.39657 * 6 5 4 9 9 C 1.34773 * 120.00236 * 204.92079 * 8 6 5 10 10 O 1.21283 * 120.00051 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00292 * 180.02562 * 9 8 6 12 12 C 1.50701 * 109.47404 * 179.97438 * 11 9 8 13 13 C 1.38264 * 119.96293 * 269.72929 * 12 11 9 14 14 C 1.38211 * 120.06706 * 179.72585 * 13 12 11 15 15 C 1.38408 * 120.00161 * 0.54191 * 14 13 12 16 16 F 1.35098 * 120.03389 * 179.74882 * 15 14 13 17 17 C 1.38643 * 119.93031 * 359.72994 * 15 14 13 18 18 F 1.35099 * 120.03926 * 180.02562 * 17 15 14 19 19 C 1.38210 * 119.96671 * 89.99835 * 12 11 9 20 20 C 1.53191 * 109.31471 * 61.36557 * 6 5 4 21 21 N 1.46923 * 109.58783 * 239.64347 * 2 1 3 22 22 C 1.36942 * 120.62922 * 6.62659 * 21 2 1 23 23 H 1.07991 * 120.00160 * 329.26350 * 22 21 2 24 24 C 1.38808 * 119.99757 * 149.26623 * 22 21 2 25 25 N 1.31623 * 120.00215 * 345.80432 * 24 22 21 26 26 Si 1.86801 * 119.99947 * 165.80179 * 24 22 21 27 27 H 1.48498 * 109.46960 * 90.00206 * 26 24 22 28 28 H 1.48506 * 109.47134 * 209.99749 * 26 24 22 29 29 H 1.48493 * 109.47269 * 330.00002 * 26 24 22 30 30 H 1.08992 * 109.47057 * 180.35328 * 1 2 3 31 31 H 1.08996 * 109.47077 * 300.36226 * 1 2 3 32 32 H 1.09000 * 109.46597 * 60.35504 * 1 2 3 33 33 H 1.09002 * 109.49562 * 294.36762 * 4 2 1 34 34 H 1.08992 * 109.50039 * 54.43925 * 4 2 1 35 35 H 1.09003 * 109.46429 * 178.61142 * 5 4 2 36 36 H 1.09002 * 109.46389 * 58.65247 * 5 4 2 37 37 H 0.97005 * 119.99584 * 24.91472 * 8 6 5 38 38 H 1.08999 * 109.47090 * 299.99931 * 11 9 8 39 39 H 1.08998 * 109.47078 * 59.99633 * 11 9 8 40 40 H 1.08001 * 119.96171 * 359.97438 * 13 12 11 41 41 H 1.08007 * 119.99407 * 180.27298 * 14 13 12 42 42 H 1.08000 * 119.99691 * 0.02562 * 19 12 11 43 43 H 1.08996 * 109.58882 * 65.14889 * 20 6 5 44 44 H 1.08991 * 109.58731 * 185.43823 * 20 6 5 45 45 H 0.96998 * 120.00146 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1703 6 6 3.9569 -1.6657 -0.0634 7 1 5.0412 -1.7696 -0.1035 8 7 3.3411 -2.9927 0.0145 9 6 3.8972 -4.0330 -0.6374 10 8 4.9072 -3.8705 -1.2889 11 6 3.2635 -5.3979 -0.5578 12 6 4.0738 -6.3762 -1.3686 13 6 3.7788 -6.5772 -2.7044 14 6 4.5241 -7.4696 -3.4515 15 6 5.5600 -8.1715 -2.8599 16 9 6.2857 -9.0478 -3.5883 17 6 5.8523 -7.9742 -1.5191 18 9 6.8632 -8.6578 -0.9395 19 6 5.1075 -7.0756 -0.7749 20 6 3.4652 -0.9470 -1.3237 21 7 2.0226 -0.6995 -1.1944 22 6 1.1538 -1.1127 -2.1689 23 1 0.1441 -1.3935 -1.9085 24 6 1.5710 -1.1707 -3.4916 25 7 2.6870 -0.5756 -3.8563 26 14 0.5488 -2.0932 -4.7538 27 1 -0.4372 -1.1663 -5.3653 28 1 1.4394 -2.6361 -5.8109 29 1 -0.1684 -3.2106 -4.0889 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3632 0.5083 -0.8932 33 1 1.7660 -0.1667 2.1368 34 1 1.6025 -1.7250 1.2917 35 1 3.9378 -1.3448 2.0670 36 1 4.0061 0.1473 1.0994 37 1 2.5332 -3.1226 0.5354 38 1 3.2333 -5.7244 0.4818 39 1 2.2490 -5.3511 -0.9535 40 1 2.9676 -6.0332 -3.1654 41 1 4.2955 -7.6224 -4.4960 42 1 5.3339 -6.9212 0.2698 43 1 3.9904 0.0019 -1.4316 44 1 3.6542 -1.5707 -2.1973 45 1 2.9787 -0.6165 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071776629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:41 Heat of formation + Delta-G solvation = -103.292112 kcal Electronic energy + Delta-G solvation = -30062.227192 eV Core-core repulsion = 25715.176720 eV Total energy + Delta-G solvation = -4347.050472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.54838 -49.63205 -41.15138 -39.99903 -38.86445 -35.68581 -34.44061 -33.71982 -32.08862 -31.79464 -31.66404 -28.60481 -27.64113 -26.58776 -24.32224 -23.87575 -23.41340 -22.09426 -21.54346 -20.30138 -19.02589 -18.31084 -18.24174 -18.12671 -17.84581 -17.35522 -17.06825 -16.55253 -16.05953 -15.96330 -15.65488 -15.60505 -15.51120 -15.22534 -14.98579 -14.87448 -14.63249 -14.44219 -14.06126 -13.95339 -13.64716 -13.06210 -12.93968 -12.91212 -12.83456 -12.69373 -12.57503 -12.45198 -12.38694 -12.26798 -12.06765 -12.02763 -11.52839 -11.16030 -11.00521 -10.79107 -10.48000 -10.08783 -9.83304 -9.67260 -8.50340 -7.76764 -5.24200 -0.17112 -0.01115 1.45975 1.47433 1.55876 1.85888 2.17656 2.55084 2.66308 2.74661 3.24444 3.39602 3.45977 3.60840 3.68540 3.97540 4.03360 4.09956 4.13997 4.17100 4.24728 4.42467 4.55307 4.60859 4.70029 4.71984 4.78483 4.84312 4.86949 4.88980 4.99889 5.01903 5.09646 5.16002 5.17620 5.32537 5.34651 5.38320 5.61874 5.66832 5.70654 5.76543 5.79923 5.83645 6.49893 6.82259 7.24202 7.52636 7.97987 8.50192 9.28439 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.003696 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.179003 B = 7574.772408 C = 9053.248167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.006 0.994 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.060 0.940 8 N -0.691 5.691 9 C 0.507 3.493 10 O -0.590 6.590 11 C -0.095 4.095 12 C -0.044 4.044 13 C -0.093 4.093 14 C -0.123 4.123 15 C 0.046 3.954 16 F -0.140 7.140 17 C 0.052 3.948 18 F -0.138 7.138 19 C -0.109 4.109 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.235 4.235 23 H 0.079 0.921 24 C -0.054 4.054 25 N -0.940 5.940 26 Si 0.949 3.051 27 H -0.291 1.291 28 H -0.306 1.306 29 H -0.257 1.257 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.166 0.834 43 H -0.014 1.014 44 H 0.047 0.953 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -11.482 12.749 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.024 0.976 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.078 0.922 8 N -0.342 5.342 9 C 0.294 3.706 10 O -0.471 6.471 11 C -0.135 4.135 12 C -0.045 4.045 13 C -0.111 4.111 14 C -0.141 4.141 15 C 0.026 3.974 16 F -0.118 7.118 17 C 0.032 3.968 18 F -0.117 7.117 19 C -0.128 4.128 20 C 0.047 3.953 21 N -0.317 5.317 22 C -0.365 4.365 23 H 0.096 0.904 24 C -0.249 4.249 25 N -0.587 5.587 26 Si 0.778 3.222 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.181 1.181 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.004 0.996 44 H 0.066 0.934 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.103 -11.402 12.163 16.708 hybrid contribution 0.137 -0.221 -1.575 1.596 sum -0.966 -11.623 10.588 15.752 Atomic orbital electron populations 1.21715 0.94599 1.01587 1.00597 1.20778 0.94212 0.92966 0.87341 0.97642 1.21937 0.94564 1.01337 0.97758 1.21652 0.97382 0.99627 0.96183 1.21379 0.96094 0.83008 0.97206 0.92214 1.45710 1.29802 1.07573 1.51132 1.20989 0.84078 0.87254 0.78260 1.90711 1.27747 1.86048 1.42584 1.20757 1.00165 0.88433 1.04101 1.19430 0.95444 0.95381 0.94218 1.21261 1.00006 0.96374 0.93459 1.21249 0.94096 0.96512 1.02276 1.17883 0.95741 0.95000 0.88795 1.91483 1.76473 1.66838 1.77041 1.17782 0.90534 0.97894 0.90618 1.91489 1.57692 1.78169 1.84311 1.21103 0.94703 0.94972 1.02013 1.20804 0.84174 0.94916 0.95384 1.44252 1.02157 1.65432 1.19884 1.19415 0.95725 1.35346 0.86059 0.90370 1.25802 0.98770 1.01163 0.99139 1.70177 1.25820 1.46665 1.16043 0.85546 0.77890 0.79319 0.79429 1.21850 1.23301 1.18072 0.92444 0.90870 0.94900 0.89536 0.91087 0.89507 0.91680 0.75288 0.83605 0.85523 0.83671 0.81965 0.81666 0.99556 0.93420 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 7.96 71.98 0.57 -3.41 16 2 C 0.15 5.39 3.50 44.98 0.16 5.55 16 3 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 4 C -0.12 -2.95 5.20 30.67 0.16 -2.79 16 5 C -0.11 -2.92 5.59 30.62 0.17 -2.75 16 6 C 0.13 4.55 2.81 45.07 0.13 4.68 16 7 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 8 N -0.69 -20.39 4.92 -442.17 -2.17 -22.57 16 9 C 0.51 15.94 7.79 87.66 0.68 16.62 16 10 O -0.59 -24.83 15.70 -3.04 -0.05 -24.88 16 11 C -0.10 -1.95 5.83 29.10 0.17 -1.78 16 12 C -0.04 -1.05 4.37 -19.86 -0.09 -1.13 16 13 C -0.09 -2.32 9.70 22.27 0.22 -2.10 16 14 C -0.12 -3.00 10.02 22.30 0.22 -2.78 16 15 C 0.05 1.24 7.31 22.41 0.16 1.40 16 16 F -0.14 -3.95 17.18 44.97 0.77 -3.17 16 17 C 0.05 1.37 7.31 22.41 0.16 1.54 16 18 F -0.14 -3.79 17.18 44.97 0.77 -3.02 16 19 C -0.11 -2.53 9.68 22.31 0.22 -2.32 16 20 C 0.17 8.22 4.87 86.36 0.42 8.64 16 21 N -0.59 -26.70 2.90 -675.24 -1.96 -28.66 16 22 C -0.23 -11.70 8.55 84.03 0.72 -10.98 16 23 H 0.08 3.67 6.26 -2.91 -0.02 3.66 16 24 C -0.05 -2.93 4.97 84.86 0.42 -2.51 16 25 N -0.94 -56.37 11.22 21.65 0.24 -56.13 16 26 Si 0.95 43.52 29.58 68.60 2.03 45.55 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 28 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 29 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 30 H 0.06 1.73 7.44 -2.39 -0.02 1.71 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.19 7.63 -2.39 -0.02 1.17 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.61 6.41 -2.39 -0.02 1.59 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 9.55 6.78 -92.70 -0.63 8.93 16 38 H 0.15 1.71 8.09 -2.39 -0.02 1.69 16 39 H 0.13 2.23 8.08 -2.39 -0.02 2.22 16 40 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.05 2.71 6.18 -2.39 -0.01 2.69 16 45 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.51 371.21 4.53 -67.98 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.39 Total: 19.02 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.50 Total: 5.87 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -3.89 Total: -107.35 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 1.55 Total: -6.19 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.51 4.53 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.308 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds