Wall clock time and date at job start Tue Mar 31 2020 21:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.58595 * 2 1 4 4 C 1.53189 * 109.58978 * 239.70866 * 2 1 3 5 5 C 1.53033 * 109.31697 * 185.57812 * 4 2 1 6 6 C 1.53037 * 109.53924 * 61.36445 * 5 4 2 7 7 H 1.08995 * 109.50329 * 178.68572 * 6 5 4 8 8 N 1.46507 * 109.49360 * 58.58949 * 6 5 4 9 9 C 1.34777 * 119.99595 * 155.00421 * 8 6 5 10 10 O 1.21275 * 120.00553 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99379 * 180.02562 * 9 8 6 12 12 C 1.50707 * 109.46809 * 179.97438 * 11 9 8 13 13 C 1.38254 * 119.96663 * 269.72209 * 12 11 9 14 14 C 1.38212 * 120.07132 * 179.76688 * 13 12 11 15 15 C 1.38410 * 120.00145 * 0.51098 * 14 13 12 16 16 F 1.35096 * 120.03932 * 179.72369 * 15 14 13 17 17 C 1.38647 * 119.92492 * 359.74494 * 15 14 13 18 18 F 1.35102 * 120.03478 * 180.02562 * 17 15 14 19 19 C 1.38213 * 119.96360 * 90.00059 * 12 11 9 20 20 C 1.53196 * 109.31637 * 298.64054 * 6 5 4 21 21 N 1.46925 * 108.77401 * 54.62664 * 20 6 5 22 22 C 1.36947 * 120.62795 * 126.39244 * 21 20 6 23 23 H 1.07994 * 119.99685 * 209.01889 * 22 21 20 24 24 C 1.38808 * 119.99670 * 29.02302 * 22 21 20 25 25 N 1.31624 * 120.00407 * 15.01475 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.01821 * 24 22 21 27 27 H 1.48504 * 109.47000 * 89.99651 * 26 24 22 28 28 H 1.48494 * 109.47423 * 209.99853 * 26 24 22 29 29 H 1.48504 * 109.46789 * 329.99936 * 26 24 22 30 30 H 1.09004 * 109.46924 * 180.28718 * 1 2 3 31 31 H 1.09005 * 109.47597 * 300.28684 * 1 2 3 32 32 H 1.08997 * 109.47243 * 60.29187 * 1 2 3 33 33 H 1.08998 * 109.50005 * 305.53594 * 4 2 1 34 34 H 1.09004 * 109.49348 * 65.62785 * 4 2 1 35 35 H 1.08998 * 109.46333 * 181.39112 * 5 4 2 36 36 H 1.09006 * 109.45896 * 301.34752 * 5 4 2 37 37 H 0.97002 * 120.00139 * 334.99617 * 8 6 5 38 38 H 1.08997 * 109.47417 * 299.99160 * 11 9 8 39 39 H 1.09003 * 109.47296 * 59.99867 * 11 9 8 40 40 H 1.08000 * 119.96293 * 0.02562 * 13 12 11 41 41 H 1.08006 * 120.00206 * 180.25717 * 14 13 12 42 42 H 1.08008 * 120.00013 * 359.95462 * 19 12 11 43 43 H 1.08994 * 109.58569 * 174.41584 * 20 6 5 44 44 H 1.08996 * 109.58172 * 294.84748 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 6 3.5675 -0.8466 -1.1711 6 6 3.9569 -1.6657 0.0616 7 1 5.0412 -1.7697 0.1018 8 7 3.3405 -2.9924 -0.0183 9 6 3.8971 -4.0342 0.6310 10 8 4.9083 -3.8735 1.2809 11 6 3.2633 -5.3990 0.5483 12 6 4.0748 -6.3793 1.3555 13 6 5.1045 -7.0814 0.7570 14 6 5.8532 -7.9775 1.4964 15 6 5.5657 -8.1806 2.8350 16 9 6.2935 -9.0604 3.5571 17 6 4.5297 -7.4804 3.4339 18 9 4.2475 -7.6765 4.7405 19 6 3.7852 -6.5798 2.6920 20 6 3.4650 -0.9485 1.3228 21 7 2.0225 -0.7009 1.1937 22 6 1.1536 -1.1157 2.1675 23 1 0.1359 -1.3698 1.9105 24 6 1.5809 -1.2092 3.4849 25 7 2.7041 -0.6315 3.8551 26 14 0.5619 -2.1552 4.7323 27 1 0.9960 -3.5753 4.7513 28 1 0.7525 -1.5612 6.0799 29 1 -0.8731 -2.0813 4.3573 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8926 33 1 1.6030 -1.7238 -1.2933 34 1 1.7661 -0.1643 -2.1370 35 1 3.9378 -1.3424 -2.0684 36 1 4.0061 0.1487 -1.0991 37 1 2.5318 -3.1210 -0.5383 38 1 2.2490 -5.3532 0.9448 39 1 3.2326 -5.7230 -0.4920 40 1 5.3267 -6.9264 -0.2885 41 1 6.6600 -8.5223 1.0287 42 1 2.9781 -6.0335 3.1576 43 1 3.6517 -1.5744 2.1953 44 1 3.9902 0.0003 1.4317 45 1 3.0028 -0.6972 4.7756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071776630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:45 Heat of formation + Delta-G solvation = -84.587644 kcal Electronic energy + Delta-G solvation = -30168.471764 eV Core-core repulsion = 25822.232378 eV Total energy + Delta-G solvation = -4346.239386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.43917 -48.51295 -39.90077 -38.80475 -37.44506 -34.12218 -32.77184 -32.62429 -30.89176 -30.62801 -29.89841 -27.49476 -26.06243 -24.94803 -23.31840 -22.35493 -22.17027 -20.68023 -20.23014 -18.75451 -17.95711 -17.20086 -17.01488 -16.90402 -16.29485 -16.19695 -15.49347 -15.00243 -14.92931 -14.81617 -14.48794 -14.13984 -14.01253 -13.96314 -13.84744 -13.43877 -13.25688 -13.03827 -12.86512 -12.53184 -12.11139 -12.01351 -11.89331 -11.62601 -11.30271 -11.24392 -11.18711 -10.96703 -10.89777 -10.74313 -10.40385 -10.34592 -9.98100 -9.58969 -9.48778 -9.38867 -9.07047 -8.62846 -8.46663 -8.37748 -6.62325 -5.76322 -3.21106 0.86215 0.98373 3.12422 3.23956 3.35635 3.41725 3.45525 3.76141 3.84927 4.31412 4.46187 4.47789 4.53376 4.91497 5.06574 5.21701 5.28457 5.30446 5.34492 5.43834 5.47692 5.48346 5.57245 5.68737 5.80685 5.87845 5.93748 5.98452 6.08558 6.12978 6.29979 6.31451 6.32187 6.41739 6.49835 6.57914 6.67136 6.71558 6.88335 7.02271 7.09797 7.38019 7.69186 7.81793 8.07971 8.47501 8.77442 9.22003 9.86417 10.42473 11.31325 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003939 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.626170 B = 7105.852274 C = 8666.143483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.700 5.700 9 C 0.514 3.486 10 O -0.539 6.539 11 C -0.106 4.106 12 C -0.036 4.036 13 C -0.088 4.088 14 C -0.126 4.126 15 C 0.060 3.940 16 F -0.133 7.133 17 C 0.070 3.930 18 F -0.130 7.130 19 C -0.108 4.108 20 C 0.162 3.838 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.898 5.898 26 Si 0.894 3.106 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -10.784 -11.814 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.093 0.907 8 N -0.350 5.350 9 C 0.299 3.701 10 O -0.416 6.416 11 C -0.146 4.146 12 C -0.037 4.037 13 C -0.106 4.106 14 C -0.144 4.144 15 C 0.040 3.960 16 F -0.112 7.112 17 C 0.050 3.950 18 F -0.108 7.108 19 C -0.127 4.127 20 C 0.035 3.965 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.086 0.914 24 C -0.193 4.193 25 N -0.542 5.542 26 Si 0.725 3.275 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.468 -10.662 -11.080 15.574 hybrid contribution -0.783 -0.602 1.009 1.412 sum 1.685 -11.264 -10.072 15.204 Atomic orbital electron populations 1.21794 0.96139 1.01219 1.00133 1.20458 0.92861 0.93632 0.87251 0.95863 1.22057 0.95150 1.00644 0.99044 1.21685 0.96994 1.00149 0.96810 1.21765 0.96900 0.81874 0.98155 0.90750 1.45824 1.29336 1.08543 1.51337 1.20122 0.84768 0.85604 0.79599 1.90718 1.25267 1.85100 1.40543 1.20724 1.00440 0.92019 1.01439 1.19219 0.95931 0.95550 0.92968 1.20897 0.94125 0.95056 1.00562 1.20969 1.01505 1.00572 0.91382 1.17663 0.93599 0.93832 0.90948 1.91504 1.75858 1.66207 1.77610 1.17622 0.97647 1.00295 0.79408 1.91529 1.92880 1.94079 1.32350 1.21040 1.00728 0.97000 0.93960 1.21190 0.83671 0.97079 0.94569 1.44055 1.02721 1.64692 1.19138 1.19087 0.94653 1.38168 0.86188 0.91391 1.25057 0.97648 0.99628 0.96937 1.69976 1.23140 1.44173 1.16916 0.86423 0.79771 0.79989 0.81356 1.21528 1.21782 1.20516 0.92947 0.92110 0.94458 0.92651 0.92936 0.93088 0.91218 0.77053 0.87358 0.87820 0.84420 0.83827 0.83539 0.88421 0.95877 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.94 37.16 0.30 -2.04 16 2 C 0.16 3.09 3.50 -67.60 -0.24 2.86 16 3 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.92 5.20 -26.62 -0.14 -2.06 16 5 C -0.12 -1.74 5.59 -26.70 -0.15 -1.89 16 6 C 0.12 2.13 2.81 -67.81 -0.19 1.94 16 7 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 8 N -0.70 -11.17 4.92 -53.69 -0.26 -11.44 16 9 C 0.51 8.55 7.79 -10.98 -0.09 8.47 16 10 O -0.54 -11.30 15.70 5.56 0.09 -11.22 16 11 C -0.11 -1.27 5.83 -29.03 -0.17 -1.44 16 12 C -0.04 -0.47 4.37 -104.62 -0.46 -0.92 16 13 C -0.09 -0.98 9.69 -39.59 -0.38 -1.36 16 14 C -0.13 -1.40 10.02 -39.53 -0.40 -1.80 16 15 C 0.06 0.82 7.31 -39.37 -0.29 0.53 16 16 F -0.13 -1.88 17.18 2.25 0.04 -1.84 16 17 C 0.07 1.07 7.31 -39.37 -0.29 0.78 16 18 F -0.13 -2.12 17.18 2.25 0.04 -2.08 16 19 C -0.11 -1.60 9.68 -39.53 -0.38 -1.98 16 20 C 0.16 3.71 4.89 -3.71 -0.02 3.70 16 21 N -0.58 -13.27 2.91 -164.78 -0.48 -13.75 16 22 C -0.25 -6.37 8.61 -15.06 -0.13 -6.50 16 23 H 0.07 1.68 6.20 -52.49 -0.33 1.36 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -25.98 11.14 55.49 0.62 -25.37 16 26 Si 0.89 21.50 29.58 -169.99 -5.03 16.47 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.05 0.90 7.40 -51.93 -0.38 0.51 16 31 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.39 5.44 6.77 -40.82 -0.28 5.16 16 38 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.15 2.20 8.06 -52.48 -0.42 1.78 16 43 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -31.59 371.00 -8.71 -40.30 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.20 Total: 4.98 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.10 Total: -1.64 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.13 Total: -50.55 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.59 -8.71 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.291 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds