Wall clock time and date at job start Tue Mar 31 2020 21:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.58595 * 2 1 4 4 C 1.53189 * 109.58978 * 239.70866 * 2 1 3 5 5 C 1.53033 * 109.31697 * 185.57812 * 4 2 1 6 6 C 1.53037 * 109.53924 * 61.36445 * 5 4 2 7 7 H 1.08995 * 109.50329 * 178.68572 * 6 5 4 8 8 N 1.46507 * 109.49360 * 58.58949 * 6 5 4 9 9 C 1.34777 * 119.99595 * 155.00421 * 8 6 5 10 10 O 1.21275 * 120.00553 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99379 * 180.02562 * 9 8 6 12 12 C 1.50707 * 109.46809 * 179.97438 * 11 9 8 13 13 C 1.38254 * 119.96663 * 269.72209 * 12 11 9 14 14 C 1.38212 * 120.07132 * 179.76688 * 13 12 11 15 15 C 1.38410 * 120.00145 * 0.51098 * 14 13 12 16 16 F 1.35096 * 120.03932 * 179.72369 * 15 14 13 17 17 C 1.38647 * 119.92492 * 359.74494 * 15 14 13 18 18 F 1.35102 * 120.03478 * 180.02562 * 17 15 14 19 19 C 1.38213 * 119.96360 * 90.00059 * 12 11 9 20 20 C 1.53196 * 109.31637 * 298.64054 * 6 5 4 21 21 N 1.46925 * 108.77401 * 54.62664 * 20 6 5 22 22 C 1.36947 * 120.62795 * 126.39244 * 21 20 6 23 23 H 1.07994 * 119.99685 * 209.01889 * 22 21 20 24 24 C 1.38808 * 119.99670 * 29.02302 * 22 21 20 25 25 N 1.31624 * 120.00407 * 15.01475 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.01821 * 24 22 21 27 27 H 1.48504 * 109.47000 * 89.99651 * 26 24 22 28 28 H 1.48494 * 109.47423 * 209.99853 * 26 24 22 29 29 H 1.48504 * 109.46789 * 329.99936 * 26 24 22 30 30 H 1.09004 * 109.46924 * 180.28718 * 1 2 3 31 31 H 1.09005 * 109.47597 * 300.28684 * 1 2 3 32 32 H 1.08997 * 109.47243 * 60.29187 * 1 2 3 33 33 H 1.08998 * 109.50005 * 305.53594 * 4 2 1 34 34 H 1.09004 * 109.49348 * 65.62785 * 4 2 1 35 35 H 1.08998 * 109.46333 * 181.39112 * 5 4 2 36 36 H 1.09006 * 109.45896 * 301.34752 * 5 4 2 37 37 H 0.97002 * 120.00139 * 334.99617 * 8 6 5 38 38 H 1.08997 * 109.47417 * 299.99160 * 11 9 8 39 39 H 1.09003 * 109.47296 * 59.99867 * 11 9 8 40 40 H 1.08000 * 119.96293 * 0.02562 * 13 12 11 41 41 H 1.08006 * 120.00206 * 180.25717 * 14 13 12 42 42 H 1.08008 * 120.00013 * 359.95462 * 19 12 11 43 43 H 1.08994 * 109.58569 * 174.41584 * 20 6 5 44 44 H 1.08996 * 109.58172 * 294.84748 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7280 -1.2462 5 6 3.5675 -0.8466 -1.1711 6 6 3.9569 -1.6657 0.0616 7 1 5.0412 -1.7697 0.1018 8 7 3.3405 -2.9924 -0.0183 9 6 3.8971 -4.0342 0.6310 10 8 4.9083 -3.8735 1.2809 11 6 3.2633 -5.3990 0.5483 12 6 4.0748 -6.3793 1.3555 13 6 5.1045 -7.0814 0.7570 14 6 5.8532 -7.9775 1.4964 15 6 5.5657 -8.1806 2.8350 16 9 6.2935 -9.0604 3.5571 17 6 4.5297 -7.4804 3.4339 18 9 4.2475 -7.6765 4.7405 19 6 3.7852 -6.5798 2.6920 20 6 3.4650 -0.9485 1.3228 21 7 2.0225 -0.7009 1.1937 22 6 1.1536 -1.1157 2.1675 23 1 0.1359 -1.3698 1.9105 24 6 1.5809 -1.2092 3.4849 25 7 2.7041 -0.6315 3.8551 26 14 0.5619 -2.1552 4.7323 27 1 0.9960 -3.5753 4.7513 28 1 0.7525 -1.5612 6.0799 29 1 -0.8731 -2.0813 4.3573 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8926 33 1 1.6030 -1.7238 -1.2933 34 1 1.7661 -0.1643 -2.1370 35 1 3.9378 -1.3424 -2.0684 36 1 4.0061 0.1487 -1.0991 37 1 2.5318 -3.1210 -0.5383 38 1 2.2490 -5.3532 0.9448 39 1 3.2326 -5.7230 -0.4920 40 1 5.3267 -6.9264 -0.2885 41 1 6.6600 -8.5223 1.0287 42 1 2.9781 -6.0335 3.1576 43 1 3.6517 -1.5744 2.1953 44 1 3.9902 0.0003 1.4317 45 1 3.0028 -0.6972 4.7756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071776630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:43 Heat of formation + Delta-G solvation = -103.576463 kcal Electronic energy + Delta-G solvation = -30169.295181 eV Core-core repulsion = 25822.232378 eV Total energy + Delta-G solvation = -4347.062803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.57077 -49.65585 -41.15454 -40.00208 -38.87410 -35.70167 -34.46884 -33.71574 -32.09221 -31.80933 -31.66913 -28.60701 -27.66004 -26.60985 -24.32551 -23.87846 -23.41303 -22.10252 -21.54704 -20.30901 -19.03693 -18.32598 -18.25563 -18.14004 -17.87347 -17.38158 -17.10574 -16.47672 -16.09153 -16.08359 -15.73888 -15.58006 -15.46624 -15.19233 -15.01635 -14.86721 -14.66326 -14.41350 -14.12334 -13.95854 -13.62797 -13.07049 -12.99468 -12.91720 -12.84705 -12.68972 -12.59607 -12.52519 -12.37962 -12.26727 -12.07713 -12.03373 -11.53297 -11.17234 -11.00831 -10.79766 -10.51112 -10.09689 -9.83740 -9.67147 -8.55523 -7.80470 -5.25728 -0.16563 -0.01570 1.40343 1.42395 1.50147 1.85130 2.18651 2.50379 2.66522 2.75361 3.24894 3.35518 3.45870 3.60497 3.66794 3.98007 4.04487 4.09015 4.15476 4.17922 4.24634 4.41478 4.55395 4.59319 4.70001 4.74596 4.78125 4.82527 4.87934 4.91560 5.00366 5.01344 5.09190 5.15602 5.17671 5.32249 5.34199 5.38436 5.60620 5.66287 5.71956 5.73952 5.79604 5.83409 6.45856 6.82010 7.20734 7.52410 7.95816 8.45946 9.24187 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003939 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.626170 B = 7105.852274 C = 8666.143483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.062 0.938 8 N -0.691 5.691 9 C 0.507 3.493 10 O -0.590 6.590 11 C -0.096 4.096 12 C -0.045 4.045 13 C -0.076 4.076 14 C -0.113 4.113 15 C 0.047 3.953 16 F -0.139 7.139 17 C 0.040 3.960 18 F -0.147 7.147 19 C -0.129 4.129 20 C 0.171 3.829 21 N -0.594 5.594 22 C -0.230 4.230 23 H 0.080 0.920 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.944 3.056 27 H -0.293 1.293 28 H -0.308 1.308 29 H -0.259 1.259 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.179 0.821 41 H 0.180 0.820 42 H 0.130 0.870 43 H 0.048 0.952 44 H -0.012 1.012 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -12.110 -16.537 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.025 0.975 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.080 0.920 8 N -0.342 5.342 9 C 0.294 3.706 10 O -0.471 6.471 11 C -0.135 4.135 12 C -0.045 4.045 13 C -0.094 4.094 14 C -0.132 4.132 15 C 0.027 3.973 16 F -0.118 7.118 17 C 0.020 3.980 18 F -0.126 7.126 19 C -0.148 4.148 20 C 0.043 3.957 21 N -0.318 5.318 22 C -0.361 4.361 23 H 0.098 0.902 24 C -0.249 4.249 25 N -0.586 5.586 26 Si 0.775 3.225 27 H -0.221 1.221 28 H -0.235 1.235 29 H -0.183 1.183 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.247 0.753 38 H 0.134 0.866 39 H 0.174 0.826 40 H 0.196 0.804 41 H 0.197 0.803 42 H 0.148 0.852 43 H 0.066 0.934 44 H 0.006 0.994 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.325 -11.996 -15.867 19.935 hybrid contribution -0.441 -0.106 2.415 2.458 sum 0.884 -12.102 -13.451 18.116 Atomic orbital electron populations 1.21728 0.94668 1.01550 1.00645 1.20784 0.94180 0.93044 0.87295 0.97462 1.21938 0.94671 1.01324 0.97677 1.21650 0.97283 0.99638 0.96191 1.21381 0.96186 0.82965 0.97109 0.91996 1.45716 1.29727 1.07542 1.51239 1.20985 0.84123 0.87280 0.78209 1.90706 1.27776 1.86107 1.42470 1.20774 0.99770 0.88584 1.04395 1.19475 0.96814 0.96017 0.92228 1.21372 0.92355 0.93368 1.02269 1.21414 1.01777 1.00008 0.89971 1.17942 0.93398 0.93916 0.92060 1.91483 1.75893 1.66394 1.78032 1.17947 0.99170 1.01835 0.79042 1.91469 1.93194 1.94355 1.33596 1.21079 1.00966 0.97493 0.95236 1.20869 0.84073 0.95070 0.95643 1.44282 1.02213 1.65329 1.19947 1.19451 0.95103 1.35197 0.86334 0.90205 1.25702 0.98765 1.01541 0.98929 1.70166 1.25310 1.46979 1.16172 0.85590 0.79695 0.78358 0.78888 1.22061 1.23518 1.18322 0.92548 0.94975 0.90700 0.91120 0.89390 0.89255 0.91633 0.75290 0.86620 0.82605 0.80406 0.80270 0.85217 0.93365 0.99447 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 7.94 71.98 0.57 -3.48 16 2 C 0.15 5.40 3.50 44.97 0.16 5.56 16 3 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 4 C -0.12 -2.93 5.20 30.67 0.16 -2.77 16 5 C -0.11 -2.85 5.59 30.62 0.17 -2.68 16 6 C 0.13 4.55 2.81 45.07 0.13 4.68 16 7 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 8 N -0.69 -20.47 4.92 -442.15 -2.17 -22.64 16 9 C 0.51 16.09 7.79 87.66 0.68 16.77 16 10 O -0.59 -25.00 15.70 -3.01 -0.05 -25.04 16 11 C -0.10 -2.00 5.83 29.10 0.17 -1.83 16 12 C -0.04 -1.08 4.37 -19.86 -0.09 -1.17 16 13 C -0.08 -1.41 9.69 22.27 0.22 -1.20 16 14 C -0.11 -2.22 10.02 22.30 0.22 -2.00 16 15 C 0.05 1.27 7.31 22.41 0.16 1.43 16 16 F -0.14 -3.93 17.18 44.97 0.77 -3.16 16 17 C 0.04 1.26 7.31 22.41 0.16 1.43 16 18 F -0.15 -5.18 17.18 44.97 0.77 -4.40 16 19 C -0.13 -3.90 9.68 22.31 0.22 -3.69 16 20 C 0.17 8.14 4.89 86.36 0.42 8.56 16 21 N -0.59 -27.09 2.91 -675.25 -1.96 -29.05 16 22 C -0.23 -11.73 8.61 84.03 0.72 -11.01 16 23 H 0.08 3.85 6.20 -2.91 -0.02 3.83 16 24 C -0.05 -3.06 4.96 84.86 0.42 -2.64 16 25 N -0.94 -57.70 11.14 21.65 0.24 -57.46 16 26 Si 0.94 45.68 29.58 68.60 2.03 47.71 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 29 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 30 H 0.06 1.73 7.40 -2.39 -0.02 1.71 16 31 H 0.03 1.17 7.66 -2.38 -0.02 1.15 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.59 6.40 -2.39 -0.02 1.58 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.41 9.58 6.77 -92.71 -0.63 8.96 16 38 H 0.12 2.30 8.08 -2.39 -0.02 2.28 16 39 H 0.16 1.62 8.08 -2.39 -0.02 1.60 16 40 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 43 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -76.76 371.00 4.53 -72.23 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.39 Total: 15.84 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.50 Total: 5.98 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -3.90 Total: -109.15 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 1.55 Total: -7.56 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.76 4.53 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071776630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.342 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds