Wall clock time and date at job start Tue Mar 31 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.58351 * 2 1 4 4 C 1.53186 * 109.58449 * 120.28643 * 2 1 3 5 5 C 1.53040 * 109.31115 * 174.42143 * 4 2 1 6 6 C 1.53037 * 109.53859 * 298.63113 * 5 4 2 7 7 H 1.09002 * 109.49772 * 301.38410 * 6 5 4 8 8 N 1.46503 * 109.49993 * 181.31637 * 6 5 4 9 9 C 1.34777 * 120.00354 * 154.99892 * 8 6 5 10 10 O 1.21284 * 119.99278 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00245 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.46981 * 180.02562 * 11 9 8 13 13 C 1.38261 * 120.00084 * 99.99983 * 12 11 9 14 14 C 1.38205 * 120.07123 * 180.23002 * 13 12 11 15 15 C 1.38261 * 120.07227 * 359.49361 * 14 13 12 16 16 C 1.38371 * 119.99614 * 0.50354 * 15 14 13 17 17 F 1.35099 * 120.03176 * 179.76963 * 16 15 14 18 18 C 1.38365 * 120.00243 * 279.97736 * 12 11 9 19 19 F 1.35103 * 120.03311 * 0.04184 * 18 12 11 20 20 C 1.53192 * 109.31235 * 61.36764 * 6 5 4 21 21 N 1.46927 * 109.58480 * 239.57405 * 2 1 3 22 22 C 1.36938 * 120.63390 * 6.62471 * 21 2 1 23 23 H 1.08001 * 119.99353 * 330.16431 * 22 21 2 24 24 C 1.38804 * 119.99885 * 150.15932 * 22 21 2 25 25 N 1.31616 * 120.00411 * 344.49392 * 24 22 21 26 26 Si 1.86810 * 119.99864 * 164.49631 * 24 22 21 27 27 H 1.48500 * 109.46960 * 59.99893 * 26 24 22 28 28 H 1.48493 * 109.47150 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.46937 * 300.00002 * 26 24 22 30 30 H 1.09001 * 109.46995 * 299.72221 * 1 2 3 31 31 H 1.09001 * 109.47116 * 59.71365 * 1 2 3 32 32 H 1.08992 * 109.47267 * 179.71323 * 1 2 3 33 33 H 1.09000 * 109.50421 * 54.46527 * 4 2 1 34 34 H 1.09007 * 109.52280 * 294.38260 * 4 2 1 35 35 H 1.09008 * 109.45778 * 178.61292 * 5 4 2 36 36 H 1.09004 * 109.45210 * 58.64684 * 5 4 2 37 37 H 0.97003 * 119.99706 * 335.00981 * 8 6 5 38 38 H 1.09000 * 109.47007 * 60.00318 * 11 9 8 39 39 H 1.09003 * 109.47153 * 299.99963 * 11 9 8 40 40 H 1.08007 * 119.96235 * 359.95782 * 13 12 11 41 41 H 1.08006 * 119.96105 * 179.74679 * 14 13 12 42 42 H 1.08001 * 119.99739 * 180.25366 * 15 14 13 43 43 H 1.09001 * 109.58681 * 65.14980 * 20 6 5 44 44 H 1.08995 * 109.58603 * 185.57669 * 20 6 5 45 45 H 0.96997 * 120.00089 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5674 -0.8466 1.1711 6 6 3.9568 -1.6659 -0.0614 7 1 3.4987 -2.6531 -0.0017 8 7 5.4142 -1.8056 -0.1153 9 6 5.9676 -2.8492 -0.7641 10 8 5.2591 -3.6725 -1.3037 11 6 7.4667 -2.9932 -0.8191 12 6 7.8240 -4.2330 -1.5978 13 6 8.2141 -4.1302 -2.9202 14 6 8.5375 -5.2666 -3.6372 15 6 8.4818 -6.5078 -3.0305 16 6 8.0918 -6.6140 -1.7072 17 9 8.0326 -7.8269 -1.1150 18 6 7.7621 -5.4741 -0.9893 19 9 7.3806 -5.5754 0.3028 20 6 3.4650 -0.9487 -1.3226 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1154 -2.1676 23 1 0.1397 -1.3820 -1.9087 24 6 1.5764 -1.1927 -3.4875 25 7 2.6872 -0.5925 -3.8591 26 14 0.5686 -2.1488 -4.7365 27 1 -0.7918 -1.5606 -4.8293 28 1 1.2295 -2.0780 -6.0644 29 1 0.4666 -3.5671 -4.3088 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7237 1.2935 34 1 1.7660 -0.1646 2.1373 35 1 3.9377 -1.3423 2.0685 36 1 4.0060 0.1488 1.0990 37 1 5.9808 -1.1470 0.3161 38 1 7.8613 -3.0737 0.1938 39 1 7.8979 -2.1201 -1.3088 40 1 8.2619 -3.1611 -3.3948 41 1 8.8381 -5.1846 -4.6713 42 1 8.7387 -7.3946 -3.5907 43 1 3.9903 0.0002 -1.4317 44 1 3.6518 -1.5745 -2.1952 45 1 2.9824 -0.6462 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071851426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:47 Heat of formation + Delta-G solvation = -85.039424 kcal Electronic energy + Delta-G solvation = -29877.933230 eV Core-core repulsion = 25531.674254 eV Total energy + Delta-G solvation = -4346.258976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.48387 -48.56387 -39.84316 -38.76677 -37.52019 -34.38851 -32.99759 -32.78383 -30.72604 -30.39574 -29.84703 -27.94434 -25.84852 -24.87288 -22.93268 -22.63422 -22.19411 -20.69875 -19.98766 -19.22199 -17.95553 -17.38722 -17.02444 -16.89585 -16.39964 -16.14449 -15.62020 -15.06035 -14.95716 -14.93638 -14.62297 -14.36594 -13.93075 -13.79796 -13.69673 -13.40409 -13.30411 -13.07630 -12.78233 -12.37945 -12.27277 -12.12483 -11.89317 -11.77520 -11.41763 -11.33344 -11.10679 -10.88150 -10.68305 -10.50822 -10.39360 -10.25738 -9.96187 -9.76713 -9.45691 -9.44011 -8.95737 -8.80202 -8.51982 -8.39854 -6.59045 -5.73212 -3.17605 0.84419 0.86511 3.01069 3.15727 3.43208 3.48805 3.52037 3.64440 3.70915 4.24495 4.34113 4.55059 4.56800 4.80161 4.94844 5.05405 5.18774 5.30043 5.35960 5.38602 5.50858 5.58121 5.62467 5.69127 5.71630 5.84359 5.96952 5.98890 6.11996 6.12933 6.28209 6.32123 6.40642 6.46954 6.51788 6.63711 6.64624 6.76325 6.95935 7.05771 7.13964 7.33269 7.74012 7.86470 7.93025 8.51747 8.64562 9.26209 9.90358 10.45944 11.35085 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.003526 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.028900 B = 7938.342233 C = 9271.128499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.524 6.524 11 C -0.105 4.105 12 C -0.068 4.068 13 C -0.088 4.088 14 C -0.099 4.099 15 C -0.129 4.129 16 C 0.064 3.936 17 F -0.132 7.132 18 C 0.085 3.915 19 F -0.126 7.126 20 C 0.170 3.830 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.008 3.992 25 N -0.901 5.901 26 Si 0.899 3.101 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.016 0.984 44 H 0.093 0.907 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.472 -3.968 6.498 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.296 3.704 10 O -0.399 6.399 11 C -0.145 4.145 12 C -0.069 4.069 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.148 4.148 16 C 0.044 3.956 17 F -0.110 7.110 18 C 0.064 3.936 19 F -0.105 7.105 20 C 0.043 3.957 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.191 4.191 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.034 0.966 44 H 0.111 0.889 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.965 -4.608 5.999 15.882 hybrid contribution -0.243 -0.405 -0.140 0.493 sum 13.722 -5.013 5.858 15.740 Atomic orbital electron populations 1.21802 0.96021 1.01429 1.00153 1.20482 0.93066 0.93509 0.87057 0.95778 1.22050 0.94342 1.01326 0.98909 1.21676 0.97395 0.99592 0.96741 1.21995 0.77775 1.00851 0.98248 0.90106 1.46037 1.08632 1.26563 1.55835 1.20181 0.89399 0.81822 0.79024 1.90779 1.63189 1.41793 1.44158 1.20658 0.95025 0.96669 1.02147 1.19281 1.00058 0.92345 0.95216 1.21053 0.97458 0.99985 0.92099 1.21037 0.99159 0.91129 1.00442 1.21062 1.01608 0.99862 0.92272 1.17627 1.05862 0.79509 0.92582 1.91514 1.94308 1.41259 1.83937 1.17448 1.02950 0.93179 0.79996 1.91512 1.88712 1.96789 1.33470 1.21053 0.83569 0.96779 0.94300 1.44015 1.02652 1.64659 1.19362 1.19093 0.95070 1.38111 0.86025 0.91323 1.25061 0.97800 0.99242 0.97001 1.69991 1.24119 1.43678 1.16701 0.86417 0.79496 0.80504 0.80654 1.20902 1.21673 1.20930 0.94352 0.92018 0.92792 0.92103 0.92694 0.93109 0.92285 0.77471 0.87722 0.87011 0.84082 0.84152 0.83865 0.96555 0.88932 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.29 16 2 C 0.17 3.39 3.50 -67.60 -0.24 3.16 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.86 5.35 -26.69 -0.14 -2.01 16 6 C 0.12 2.26 2.60 -67.81 -0.18 2.08 16 7 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 8 N -0.72 -11.32 5.08 -53.69 -0.27 -11.59 16 9 C 0.51 8.64 7.78 -10.99 -0.09 8.55 16 10 O -0.52 -11.65 15.61 5.55 0.09 -11.56 16 11 C -0.10 -1.23 5.55 -29.04 -0.16 -1.39 16 12 C -0.07 -0.88 4.43 -104.57 -0.46 -1.34 16 13 C -0.09 -0.97 9.67 -39.58 -0.38 -1.36 16 14 C -0.10 -0.97 10.04 -39.58 -0.40 -1.37 16 15 C -0.13 -1.37 10.02 -39.52 -0.40 -1.77 16 16 C 0.06 0.86 7.31 -39.37 -0.29 0.58 16 17 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 18 C 0.08 1.23 7.13 -39.37 -0.28 0.94 16 19 F -0.13 -1.99 16.58 2.25 0.04 -1.95 16 20 C 0.17 4.08 4.86 -3.71 -0.02 4.06 16 21 N -0.58 -14.56 2.99 -164.78 -0.49 -15.05 16 22 C -0.25 -6.98 8.58 -15.06 -0.13 -7.11 16 23 H 0.07 1.84 6.23 -52.49 -0.33 1.52 16 24 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 25 N -0.90 -26.50 11.23 55.49 0.62 -25.88 16 26 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 29 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.39 4.62 8.60 -40.82 -0.35 4.27 16 38 H 0.10 1.00 7.95 -51.93 -0.41 0.58 16 39 H 0.11 0.97 8.00 -51.93 -0.42 0.56 16 40 H 0.14 1.28 8.04 -52.48 -0.42 0.86 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -34.23 373.69 -8.83 -43.06 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.36 Total: 3.14 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.09 Total: -1.43 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.14 Total: -52.52 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.23 -8.83 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.980 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds