Wall clock time and date at job start Tue Mar 31 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.58351 * 2 1 4 4 C 1.53186 * 109.58449 * 120.28643 * 2 1 3 5 5 C 1.53040 * 109.31115 * 174.42143 * 4 2 1 6 6 C 1.53037 * 109.53859 * 298.63113 * 5 4 2 7 7 H 1.09002 * 109.49772 * 301.38410 * 6 5 4 8 8 N 1.46503 * 109.49993 * 181.31637 * 6 5 4 9 9 C 1.34777 * 120.00354 * 154.99892 * 8 6 5 10 10 O 1.21284 * 119.99278 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00245 * 180.02562 * 9 8 6 12 12 C 1.50700 * 109.46981 * 180.02562 * 11 9 8 13 13 C 1.38261 * 120.00084 * 99.99983 * 12 11 9 14 14 C 1.38205 * 120.07123 * 180.23002 * 13 12 11 15 15 C 1.38261 * 120.07227 * 359.49361 * 14 13 12 16 16 C 1.38371 * 119.99614 * 0.50354 * 15 14 13 17 17 F 1.35099 * 120.03176 * 179.76963 * 16 15 14 18 18 C 1.38365 * 120.00243 * 279.97736 * 12 11 9 19 19 F 1.35103 * 120.03311 * 0.04184 * 18 12 11 20 20 C 1.53192 * 109.31235 * 61.36764 * 6 5 4 21 21 N 1.46927 * 109.58480 * 239.57405 * 2 1 3 22 22 C 1.36938 * 120.63390 * 6.62471 * 21 2 1 23 23 H 1.08001 * 119.99353 * 330.16431 * 22 21 2 24 24 C 1.38804 * 119.99885 * 150.15932 * 22 21 2 25 25 N 1.31616 * 120.00411 * 344.49392 * 24 22 21 26 26 Si 1.86810 * 119.99864 * 164.49631 * 24 22 21 27 27 H 1.48500 * 109.46960 * 59.99893 * 26 24 22 28 28 H 1.48493 * 109.47150 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.46937 * 300.00002 * 26 24 22 30 30 H 1.09001 * 109.46995 * 299.72221 * 1 2 3 31 31 H 1.09001 * 109.47116 * 59.71365 * 1 2 3 32 32 H 1.08992 * 109.47267 * 179.71323 * 1 2 3 33 33 H 1.09000 * 109.50421 * 54.46527 * 4 2 1 34 34 H 1.09007 * 109.52280 * 294.38260 * 4 2 1 35 35 H 1.09008 * 109.45778 * 178.61292 * 5 4 2 36 36 H 1.09004 * 109.45210 * 58.64684 * 5 4 2 37 37 H 0.97003 * 119.99706 * 335.00981 * 8 6 5 38 38 H 1.09000 * 109.47007 * 60.00318 * 11 9 8 39 39 H 1.09003 * 109.47153 * 299.99963 * 11 9 8 40 40 H 1.08007 * 119.96235 * 359.95782 * 13 12 11 41 41 H 1.08006 * 119.96105 * 179.74679 * 14 13 12 42 42 H 1.08001 * 119.99739 * 180.25366 * 15 14 13 43 43 H 1.09001 * 109.58681 * 65.14980 * 20 6 5 44 44 H 1.08995 * 109.58603 * 185.57669 * 20 6 5 45 45 H 0.96997 * 120.00089 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5674 -0.8466 1.1711 6 6 3.9568 -1.6659 -0.0614 7 1 3.4987 -2.6531 -0.0017 8 7 5.4142 -1.8056 -0.1153 9 6 5.9676 -2.8492 -0.7641 10 8 5.2591 -3.6725 -1.3037 11 6 7.4667 -2.9932 -0.8191 12 6 7.8240 -4.2330 -1.5978 13 6 8.2141 -4.1302 -2.9202 14 6 8.5375 -5.2666 -3.6372 15 6 8.4818 -6.5078 -3.0305 16 6 8.0918 -6.6140 -1.7072 17 9 8.0326 -7.8269 -1.1150 18 6 7.7621 -5.4741 -0.9893 19 9 7.3806 -5.5754 0.3028 20 6 3.4650 -0.9487 -1.3226 21 7 2.0225 -0.7010 -1.1936 22 6 1.1537 -1.1154 -2.1676 23 1 0.1397 -1.3820 -1.9087 24 6 1.5764 -1.1927 -3.4875 25 7 2.6872 -0.5925 -3.8591 26 14 0.5686 -2.1488 -4.7365 27 1 -0.7918 -1.5606 -4.8293 28 1 1.2295 -2.0780 -6.0644 29 1 0.4666 -3.5671 -4.3088 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6029 -1.7237 1.2935 34 1 1.7660 -0.1646 2.1373 35 1 3.9377 -1.3423 2.0685 36 1 4.0060 0.1488 1.0990 37 1 5.9808 -1.1470 0.3161 38 1 7.8613 -3.0737 0.1938 39 1 7.8979 -2.1201 -1.3088 40 1 8.2619 -3.1611 -3.3948 41 1 8.8381 -5.1846 -4.6713 42 1 8.7387 -7.3946 -3.5907 43 1 3.9903 0.0002 -1.4317 44 1 3.6518 -1.5745 -2.1952 45 1 2.9824 -0.6462 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:47 Heat of formation + Delta-G solvation = -106.765718 kcal Electronic energy + Delta-G solvation = -29878.875353 eV Core-core repulsion = 25531.674254 eV Total energy + Delta-G solvation = -4347.201099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.54205 -49.63488 -41.12180 -39.89773 -39.04771 -35.97898 -34.65309 -33.99619 -32.19557 -31.72188 -31.29795 -29.01857 -27.59699 -26.56803 -24.09656 -23.85563 -23.52362 -22.17660 -21.42746 -20.84568 -18.97219 -18.38895 -18.34194 -18.17074 -17.92953 -17.32348 -17.22497 -16.63651 -16.08107 -16.04453 -15.79523 -15.68807 -15.50622 -15.38541 -15.03282 -14.89797 -14.50247 -14.45629 -14.16594 -13.99240 -13.51392 -13.20584 -13.07350 -13.01131 -12.78962 -12.72505 -12.66179 -12.56754 -12.29353 -12.25206 -12.12344 -11.98898 -11.66349 -11.41505 -11.14249 -10.89126 -10.52925 -10.04825 -9.91137 -9.75310 -8.60538 -7.85327 -5.31166 -0.06930 -0.05326 1.39958 1.45199 1.49312 1.70441 2.13134 2.46990 2.54664 2.79000 3.25776 3.31069 3.43553 3.67271 3.74162 3.88243 3.95444 4.05294 4.09244 4.17130 4.27207 4.32119 4.40094 4.48730 4.62785 4.71278 4.76380 4.82630 4.85951 4.89128 4.97156 5.00273 5.06499 5.14026 5.18482 5.27031 5.30646 5.35793 5.50794 5.54019 5.61465 5.70805 5.75880 5.81467 6.42415 6.66339 7.17075 7.38566 7.90693 8.39964 9.19872 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.003526 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.028900 B = 7938.342233 C = 9271.128499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.154 3.846 3 H 0.024 0.976 4 C -0.119 4.119 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.042 0.958 8 N -0.708 5.708 9 C 0.504 3.496 10 O -0.585 6.585 11 C -0.094 4.094 12 C -0.084 4.084 13 C -0.093 4.093 14 C -0.092 4.092 15 C -0.124 4.124 16 C 0.039 3.961 17 F -0.143 7.143 18 C 0.053 3.947 19 F -0.143 7.143 20 C 0.183 3.817 21 N -0.604 5.604 22 C -0.255 4.255 23 H 0.071 0.929 24 C -0.048 4.048 25 N -0.930 5.930 26 Si 0.953 3.047 27 H -0.269 1.269 28 H -0.293 1.293 29 H -0.290 1.290 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.002 0.998 44 H 0.042 0.958 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.529 -2.991 7.477 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.042 0.958 4 C -0.159 4.159 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.061 0.939 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.465 6.465 11 C -0.133 4.133 12 C -0.086 4.086 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.142 4.142 16 C 0.019 3.981 17 F -0.122 7.122 18 C 0.033 3.967 19 F -0.122 7.122 20 C 0.056 3.944 21 N -0.329 5.329 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.243 4.243 25 N -0.576 5.576 26 Si 0.782 3.218 27 H -0.194 1.194 28 H -0.219 1.219 29 H -0.217 1.217 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.181 0.819 41 H 0.195 0.805 42 H 0.189 0.811 43 H 0.020 0.980 44 H 0.060 0.940 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.040 -3.591 7.033 16.987 hybrid contribution -0.576 -0.691 -0.451 1.006 sum 14.464 -4.282 6.582 16.458 Atomic orbital electron populations 1.21736 0.94941 1.00989 1.01053 1.20787 0.94177 0.93430 0.86697 0.95803 1.21961 0.94813 1.00672 0.98421 1.21642 0.96920 1.00105 0.95844 1.21480 0.79684 0.98676 0.97745 0.93921 1.45854 1.07451 1.27075 1.55592 1.21146 0.91499 0.80779 0.77441 1.90753 1.65128 1.43947 1.46645 1.20708 0.90759 0.97737 1.04133 1.19536 1.00629 0.92153 0.96251 1.21473 0.96542 1.01625 0.91434 1.21519 0.97363 0.90198 1.01884 1.21461 1.00147 1.01506 0.91116 1.18018 1.07293 0.78978 0.93820 1.91474 1.94567 1.41794 1.84328 1.17857 1.04601 0.94447 0.79819 1.91452 1.89183 1.96946 1.34581 1.20745 0.83603 0.95314 0.94780 1.44317 1.02706 1.65565 1.20264 1.19410 0.95506 1.36880 0.86772 0.91191 1.25735 0.99097 1.00732 0.98785 1.70131 1.25636 1.45412 1.16417 0.85556 0.78917 0.78825 0.78530 1.19394 1.21879 1.21683 0.90277 0.94296 0.93812 0.93384 0.88638 0.89927 0.90449 0.74711 0.85217 0.83359 0.81915 0.80506 0.81111 0.97990 0.93994 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.95 71.98 0.57 -4.16 16 2 C 0.15 6.15 3.50 44.97 0.16 6.31 16 3 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.12 -3.76 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.15 5.35 30.62 0.16 -2.99 16 6 C 0.13 5.06 2.60 45.07 0.12 5.18 16 7 H 0.04 1.99 7.58 -2.39 -0.02 1.98 16 8 N -0.71 -21.66 5.08 -442.17 -2.25 -23.91 16 9 C 0.50 17.06 7.78 87.66 0.68 17.74 16 10 O -0.59 -27.17 15.61 -3.04 -0.05 -27.22 16 11 C -0.09 -2.06 5.55 29.10 0.16 -1.90 16 12 C -0.08 -2.14 4.43 -19.83 -0.09 -2.23 16 13 C -0.09 -1.89 9.67 22.27 0.22 -1.68 16 14 C -0.09 -1.58 10.04 22.27 0.22 -1.35 16 15 C -0.12 -2.45 10.02 22.31 0.22 -2.23 16 16 C 0.04 1.06 7.31 22.41 0.16 1.22 16 17 F -0.14 -4.17 17.18 44.97 0.77 -3.39 16 18 C 0.05 1.56 7.13 22.41 0.16 1.72 16 19 F -0.14 -4.67 16.58 44.97 0.75 -3.93 16 20 C 0.18 9.02 4.86 86.36 0.42 9.44 16 21 N -0.60 -30.71 2.99 -675.23 -2.02 -32.73 16 22 C -0.26 -14.43 8.58 84.03 0.72 -13.70 16 23 H 0.07 3.84 6.23 -2.91 -0.02 3.82 16 24 C -0.05 -2.80 4.94 84.86 0.42 -2.38 16 25 N -0.93 -56.79 11.23 21.65 0.24 -56.54 16 26 Si 0.95 47.52 29.58 68.60 2.03 49.55 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.56 7.67 -2.39 -0.02 1.54 16 32 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.42 8.75 8.60 -92.71 -0.80 7.95 16 38 H 0.13 2.19 7.95 -2.39 -0.02 2.17 16 39 H 0.15 2.12 8.00 -2.39 -0.02 2.10 16 40 H 0.16 2.52 8.04 -2.91 -0.02 2.50 16 41 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.04 2.50 6.15 -2.39 -0.01 2.48 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -81.43 373.69 4.18 -77.25 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.22 Total: 15.53 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.48 Total: 5.39 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.02 Total: -113.18 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 1.52 Total: -7.32 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -81.43 4.18 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.517 kcal (2) G-P(sol) polarization free energy of solvation -81.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds