Wall clock time and date at job start Tue Mar 31 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58327 * 2 1 4 4 C 1.53185 * 109.58883 * 239.71391 * 2 1 3 5 5 C 1.53041 * 109.31084 * 185.43510 * 4 2 1 6 6 C 1.53042 * 109.53857 * 61.36407 * 5 4 2 7 7 H 1.09003 * 109.49633 * 58.61959 * 6 5 4 8 8 N 1.46502 * 109.49899 * 178.68124 * 6 5 4 9 9 C 1.34774 * 120.00201 * 204.99922 * 8 6 5 10 10 O 1.21282 * 119.99674 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00105 * 179.97438 * 9 8 6 12 12 C 1.50703 * 109.47206 * 179.97438 * 11 9 8 13 13 C 1.38255 * 119.99652 * 100.00309 * 12 11 9 14 14 C 1.38214 * 120.07124 * 179.70453 * 13 12 11 15 15 C 1.38250 * 120.06932 * 0.27361 * 14 13 12 16 16 C 1.38366 * 120.00434 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.04015 * 180.02562 * 16 15 14 18 18 C 1.38368 * 120.00386 * 280.25970 * 12 11 9 19 19 F 1.35098 * 120.03591 * 359.97438 * 18 12 11 20 20 C 1.53188 * 109.31539 * 298.63346 * 6 5 4 21 21 N 1.46930 * 109.69973 * 120.35015 * 2 1 3 22 22 C 1.36932 * 120.63272 * 353.44455 * 21 2 1 23 23 H 1.08004 * 119.99864 * 28.66256 * 22 21 2 24 24 C 1.38807 * 119.99943 * 208.65920 * 22 21 2 25 25 N 1.31614 * 120.00358 * 14.71065 * 24 22 21 26 26 Si 1.86807 * 119.99912 * 194.70420 * 24 22 21 27 27 H 1.48495 * 109.47071 * 90.00090 * 26 24 22 28 28 H 1.48501 * 109.47111 * 210.00433 * 26 24 22 29 29 H 1.48504 * 109.46902 * 330.00367 * 26 24 22 30 30 H 1.09002 * 109.47193 * 180.28237 * 1 2 3 31 31 H 1.08997 * 109.47733 * 300.28810 * 1 2 3 32 32 H 1.09007 * 109.47350 * 60.28693 * 1 2 3 33 33 H 1.08993 * 109.50045 * 65.48803 * 4 2 1 34 34 H 1.09003 * 109.52497 * 305.40041 * 4 2 1 35 35 H 1.08994 * 109.46206 * 301.34436 * 5 4 2 36 36 H 1.09003 * 109.45919 * 181.38201 * 5 4 2 37 37 H 0.97002 * 119.99806 * 25.00427 * 8 6 5 38 38 H 1.08998 * 109.46969 * 60.00503 * 11 9 8 39 39 H 1.08998 * 109.47449 * 300.00659 * 11 9 8 40 40 H 1.08002 * 119.96647 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.96484 * 180.29674 * 14 13 12 42 42 H 1.08007 * 119.99931 * 180.02562 * 15 14 13 43 43 H 1.08993 * 109.59105 * 174.41755 * 20 6 5 44 44 H 1.08999 * 109.58561 * 294.85384 * 20 6 5 45 45 H 0.96997 * 120.00207 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2462 5 6 3.5678 -0.8433 -1.1727 6 6 3.9603 -1.6607 0.0602 7 1 3.5041 -2.6489 0.0018 8 7 5.4180 -1.7974 0.1125 9 6 5.9743 -2.8393 0.7617 10 8 5.2681 -3.6639 1.3021 11 6 7.4737 -2.9802 0.8150 12 6 7.8345 -4.2184 1.5945 13 6 8.1778 -5.3796 0.9273 14 6 8.5149 -6.5144 1.6407 15 6 8.5041 -6.4924 3.0230 16 6 8.1550 -5.3336 3.6938 17 9 8.1447 -5.3111 5.0446 18 6 7.8172 -4.1947 2.9779 19 9 7.4773 -3.0617 3.6306 20 6 3.4685 -0.9434 1.3213 21 7 2.0252 -0.6990 1.1937 22 6 1.1584 -1.1142 2.1691 23 1 0.1392 -1.3649 1.9146 24 6 1.5897 -1.2129 3.4847 25 7 2.7187 -0.6445 3.8517 26 14 0.5676 -2.1524 4.7347 27 1 0.9905 -3.5758 4.7503 28 1 0.7679 -1.5616 6.0823 29 1 -0.8681 -2.0666 4.3649 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3634 0.5094 -0.8926 33 1 1.7639 -0.1655 -2.1371 34 1 1.6050 -1.7247 -1.2926 35 1 4.0045 0.1528 -1.1020 36 1 3.9381 -1.3391 -2.0700 37 1 5.9828 -1.1379 -0.3200 38 1 7.9037 -2.1057 1.3035 39 1 7.8674 -3.0606 -0.1982 40 1 8.1868 -5.3989 -0.1525 41 1 8.7874 -7.4193 1.1178 42 1 8.7681 -7.3797 3.5794 43 1 3.6574 -1.5681 2.1942 44 1 3.9918 0.0066 1.4289 45 1 3.0198 -0.7132 4.7711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071851428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:50 Heat of formation + Delta-G solvation = -83.637482 kcal Electronic energy + Delta-G solvation = -30046.839963 eV Core-core repulsion = 25700.641779 eV Total energy + Delta-G solvation = -4346.198184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.37714 -48.44921 -39.83343 -38.75646 -37.50920 -34.37711 -32.98615 -32.77177 -30.72002 -30.37775 -29.80570 -27.93292 -25.83607 -24.86020 -22.90193 -22.60466 -22.17232 -20.68785 -19.97644 -19.20664 -17.88185 -17.33404 -16.98619 -16.85133 -16.39345 -16.06561 -15.59697 -15.08200 -14.90443 -14.80987 -14.66935 -14.22941 -13.89224 -13.76648 -13.63104 -13.41426 -13.34176 -13.05139 -12.72158 -12.35838 -12.28645 -12.11254 -11.84676 -11.81152 -11.40484 -11.29341 -11.10197 -10.83597 -10.68274 -10.49553 -10.36734 -10.22817 -9.91881 -9.75110 -9.44405 -9.42496 -8.94490 -8.75740 -8.50815 -8.36730 -6.57838 -5.68500 -3.13501 0.85173 0.89165 3.01298 3.16728 3.46539 3.52776 3.54641 3.65514 3.76742 4.29945 4.37066 4.54789 4.58178 4.81575 4.92521 5.06824 5.19472 5.30095 5.36730 5.39959 5.52099 5.59738 5.64790 5.69942 5.72309 5.85821 5.96252 5.98990 6.10282 6.11863 6.28684 6.32582 6.40740 6.47066 6.52894 6.64247 6.67053 6.76900 6.97157 7.06567 7.14746 7.36625 7.81074 7.89118 7.94795 8.54893 8.65546 9.29646 9.93915 10.48392 11.39251 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003852 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.799347 B = 7267.394473 C = 8959.457578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.720 5.720 9 C 0.511 3.489 10 O -0.524 6.524 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.092 4.092 14 C -0.104 4.104 15 C -0.129 4.129 16 C 0.066 3.934 17 F -0.129 7.129 18 C 0.090 3.910 19 F -0.119 7.119 20 C 0.167 3.833 21 N -0.584 5.584 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.392 0.608 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.016 0.984 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 -6.533 -10.754 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.295 3.705 10 O -0.399 6.399 11 C -0.145 4.145 12 C -0.072 4.072 13 C -0.110 4.110 14 C -0.122 4.122 15 C -0.148 4.148 16 C 0.045 3.955 17 F -0.108 7.108 18 C 0.070 3.930 19 F -0.097 7.097 20 C 0.040 3.960 21 N -0.307 5.307 22 C -0.384 4.384 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.729 3.271 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.225 0.775 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.115 0.885 44 H 0.034 0.966 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.761 -7.066 -10.088 18.468 hybrid contribution -0.204 0.118 0.953 0.982 sum 13.557 -6.948 -9.135 17.763 Atomic orbital electron populations 1.21799 0.96021 1.01420 1.00150 1.20475 0.93037 0.93538 0.87098 0.95822 1.22046 0.94338 1.01304 0.98910 1.21676 0.97383 0.99629 0.96683 1.21993 0.77748 1.00840 0.98262 0.90110 1.46035 1.08626 1.26556 1.55847 1.20186 0.89391 0.81888 0.78987 1.90778 1.63359 1.41870 1.43894 1.20654 0.94990 0.96906 1.01926 1.19285 1.00400 0.96727 0.90767 1.20957 0.98289 0.91209 1.00532 1.20979 0.99613 0.98750 0.92862 1.21050 1.01812 0.96630 0.95309 1.17676 1.05686 0.94597 0.77506 1.91530 1.94298 1.96978 1.27991 1.17529 1.02352 0.82803 0.90306 1.91581 1.89487 1.47690 1.80962 1.21108 0.83420 0.96937 0.94511 1.44033 1.02658 1.64765 1.19277 1.19146 0.94618 1.38378 0.86217 0.91172 1.25058 0.97661 0.99492 0.97011 1.69972 1.22825 1.44548 1.17022 0.86341 0.79701 0.80103 0.80936 1.21362 1.21782 1.20430 0.92795 0.92030 0.94350 0.92721 0.92113 0.92308 0.93155 0.77491 0.87462 0.87320 0.84417 0.84320 0.83902 0.88493 0.96635 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 2 C 0.17 3.41 3.49 -67.60 -0.24 3.18 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16 5 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 6 C 0.12 2.27 2.61 -67.81 -0.18 2.09 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -11.36 5.08 -53.69 -0.27 -11.63 16 9 C 0.51 8.67 7.78 -10.99 -0.09 8.58 16 10 O -0.52 -11.68 15.60 5.56 0.09 -11.60 16 11 C -0.10 -1.24 5.55 -29.03 -0.16 -1.40 16 12 C -0.07 -0.92 4.44 -104.57 -0.46 -1.38 16 13 C -0.09 -0.93 9.67 -39.58 -0.38 -1.31 16 14 C -0.10 -0.94 10.04 -39.59 -0.40 -1.34 16 15 C -0.13 -1.38 10.02 -39.53 -0.40 -1.78 16 16 C 0.07 0.94 7.31 -39.36 -0.29 0.65 16 17 F -0.13 -2.02 17.18 2.25 0.04 -1.98 16 18 C 0.09 1.42 7.12 -39.36 -0.28 1.14 16 19 F -0.12 -2.20 16.58 2.25 0.04 -2.16 16 20 C 0.17 4.12 4.87 -3.71 -0.02 4.10 16 21 N -0.58 -14.78 2.99 -164.78 -0.49 -15.27 16 22 C -0.25 -7.10 8.63 -15.06 -0.13 -7.23 16 23 H 0.07 1.91 6.20 -52.48 -0.33 1.58 16 24 C 0.01 0.20 4.97 -17.43 -0.09 0.11 16 25 N -0.90 -27.40 11.09 55.49 0.62 -26.79 16 26 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.64 8.60 -40.82 -0.35 4.29 16 38 H 0.11 1.16 7.95 -51.93 -0.41 0.74 16 39 H 0.11 0.82 8.00 -51.93 -0.42 0.41 16 40 H 0.14 0.99 8.04 -52.49 -0.42 0.57 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.10 2.85 6.02 -51.93 -0.31 2.54 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -35.40 373.48 -8.84 -44.24 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.36 Total: 2.69 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.09 Total: -1.15 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.15 Total: -53.69 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.40 -8.84 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.397 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds