Wall clock time and date at job start Tue Mar 31 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58327 * 2 1 4 4 C 1.53185 * 109.58883 * 239.71391 * 2 1 3 5 5 C 1.53041 * 109.31084 * 185.43510 * 4 2 1 6 6 C 1.53042 * 109.53857 * 61.36407 * 5 4 2 7 7 H 1.09003 * 109.49633 * 58.61959 * 6 5 4 8 8 N 1.46502 * 109.49899 * 178.68124 * 6 5 4 9 9 C 1.34774 * 120.00201 * 204.99922 * 8 6 5 10 10 O 1.21282 * 119.99674 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00105 * 179.97438 * 9 8 6 12 12 C 1.50703 * 109.47206 * 179.97438 * 11 9 8 13 13 C 1.38255 * 119.99652 * 100.00309 * 12 11 9 14 14 C 1.38214 * 120.07124 * 179.70453 * 13 12 11 15 15 C 1.38250 * 120.06932 * 0.27361 * 14 13 12 16 16 C 1.38366 * 120.00434 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.04015 * 180.02562 * 16 15 14 18 18 C 1.38368 * 120.00386 * 280.25970 * 12 11 9 19 19 F 1.35098 * 120.03591 * 359.97438 * 18 12 11 20 20 C 1.53188 * 109.31539 * 298.63346 * 6 5 4 21 21 N 1.46930 * 109.69973 * 120.35015 * 2 1 3 22 22 C 1.36932 * 120.63272 * 353.44455 * 21 2 1 23 23 H 1.08004 * 119.99864 * 28.66256 * 22 21 2 24 24 C 1.38807 * 119.99943 * 208.65920 * 22 21 2 25 25 N 1.31614 * 120.00358 * 14.71065 * 24 22 21 26 26 Si 1.86807 * 119.99912 * 194.70420 * 24 22 21 27 27 H 1.48495 * 109.47071 * 90.00090 * 26 24 22 28 28 H 1.48501 * 109.47111 * 210.00433 * 26 24 22 29 29 H 1.48504 * 109.46902 * 330.00367 * 26 24 22 30 30 H 1.09002 * 109.47193 * 180.28237 * 1 2 3 31 31 H 1.08997 * 109.47733 * 300.28810 * 1 2 3 32 32 H 1.09007 * 109.47350 * 60.28693 * 1 2 3 33 33 H 1.08993 * 109.50045 * 65.48803 * 4 2 1 34 34 H 1.09003 * 109.52497 * 305.40041 * 4 2 1 35 35 H 1.08994 * 109.46206 * 301.34436 * 5 4 2 36 36 H 1.09003 * 109.45919 * 181.38201 * 5 4 2 37 37 H 0.97002 * 119.99806 * 25.00427 * 8 6 5 38 38 H 1.08998 * 109.46969 * 60.00503 * 11 9 8 39 39 H 1.08998 * 109.47449 * 300.00659 * 11 9 8 40 40 H 1.08002 * 119.96647 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.96484 * 180.29674 * 14 13 12 42 42 H 1.08007 * 119.99931 * 180.02562 * 15 14 13 43 43 H 1.08993 * 109.59105 * 174.41755 * 20 6 5 44 44 H 1.08999 * 109.58561 * 294.85384 * 20 6 5 45 45 H 0.96997 * 120.00207 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2462 5 6 3.5678 -0.8433 -1.1727 6 6 3.9603 -1.6607 0.0602 7 1 3.5041 -2.6489 0.0018 8 7 5.4180 -1.7974 0.1125 9 6 5.9743 -2.8393 0.7617 10 8 5.2681 -3.6639 1.3021 11 6 7.4737 -2.9802 0.8150 12 6 7.8345 -4.2184 1.5945 13 6 8.1778 -5.3796 0.9273 14 6 8.5149 -6.5144 1.6407 15 6 8.5041 -6.4924 3.0230 16 6 8.1550 -5.3336 3.6938 17 9 8.1447 -5.3111 5.0446 18 6 7.8172 -4.1947 2.9779 19 9 7.4773 -3.0617 3.6306 20 6 3.4685 -0.9434 1.3213 21 7 2.0252 -0.6990 1.1937 22 6 1.1584 -1.1142 2.1691 23 1 0.1392 -1.3649 1.9146 24 6 1.5897 -1.2129 3.4847 25 7 2.7187 -0.6445 3.8517 26 14 0.5676 -2.1524 4.7347 27 1 0.9905 -3.5758 4.7503 28 1 0.7679 -1.5616 6.0823 29 1 -0.8681 -2.0666 4.3649 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5183 0.8873 32 1 -0.3634 0.5094 -0.8926 33 1 1.7639 -0.1655 -2.1371 34 1 1.6050 -1.7247 -1.2926 35 1 4.0045 0.1528 -1.1020 36 1 3.9381 -1.3391 -2.0700 37 1 5.9828 -1.1379 -0.3200 38 1 7.9037 -2.1057 1.3035 39 1 7.8674 -3.0606 -0.1982 40 1 8.1868 -5.3989 -0.1525 41 1 8.7874 -7.4193 1.1178 42 1 8.7681 -7.3797 3.5794 43 1 3.6574 -1.5681 2.1942 44 1 3.9918 0.0066 1.4289 45 1 3.0198 -0.7132 4.7711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:50 Heat of formation + Delta-G solvation = -107.429158 kcal Electronic energy + Delta-G solvation = -30047.871647 eV Core-core repulsion = 25700.641779 eV Total energy + Delta-G solvation = -4347.229868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.54600 -49.64557 -41.11622 -39.89191 -39.04968 -35.98328 -34.67822 -33.98769 -32.19779 -31.72365 -31.28573 -29.00877 -27.62380 -26.57786 -24.09585 -23.83985 -23.50891 -22.17751 -21.42346 -20.84830 -18.96544 -18.42477 -18.31212 -18.16419 -17.93917 -17.32917 -17.23455 -16.68169 -16.07987 -16.05642 -15.75511 -15.71628 -15.45211 -15.40690 -15.04158 -14.89970 -14.57549 -14.42096 -14.08848 -14.04251 -13.51969 -13.20098 -13.07846 -13.01261 -12.79312 -12.76305 -12.66336 -12.57381 -12.29050 -12.23492 -12.11673 -11.98182 -11.66206 -11.41487 -11.15147 -10.88583 -10.57391 -10.04387 -9.90630 -9.74203 -8.65457 -7.87751 -5.33910 -0.05712 -0.03976 1.35198 1.40581 1.46403 1.69934 2.15509 2.45114 2.55004 2.83120 3.28544 3.29158 3.44351 3.65483 3.76095 3.89442 3.97163 4.07255 4.10396 4.18790 4.27219 4.33739 4.40377 4.49101 4.62285 4.70901 4.79177 4.84602 4.88058 4.90005 4.99376 5.00340 5.07693 5.16204 5.19241 5.26121 5.31902 5.35162 5.51640 5.54249 5.61009 5.67816 5.78456 5.82348 6.38077 6.66880 7.13216 7.39294 7.88721 8.36372 9.16372 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003852 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.799347 B = 7267.394473 C = 8959.457578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.132 3.868 7 H 0.049 0.951 8 N -0.708 5.708 9 C 0.504 3.496 10 O -0.585 6.585 11 C -0.094 4.094 12 C -0.086 4.086 13 C -0.083 4.083 14 C -0.088 4.088 15 C -0.124 4.124 16 C 0.030 3.970 17 F -0.149 7.149 18 C 0.041 3.959 19 F -0.152 7.152 20 C 0.178 3.822 21 N -0.605 5.605 22 C -0.247 4.247 23 H 0.077 0.923 24 C -0.056 4.056 25 N -0.934 5.934 26 Si 0.953 3.047 27 H -0.300 1.300 28 H -0.295 1.295 29 H -0.256 1.256 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.114 0.886 39 H 0.165 0.835 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.170 0.830 43 H 0.040 0.960 44 H -0.006 1.006 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 -7.612 -15.297 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.026 3.974 7 H 0.067 0.933 8 N -0.360 5.360 9 C 0.291 3.709 10 O -0.465 6.465 11 C -0.133 4.133 12 C -0.087 4.087 13 C -0.101 4.101 14 C -0.106 4.106 15 C -0.142 4.142 16 C 0.011 3.989 17 F -0.128 7.128 18 C 0.021 3.979 19 F -0.131 7.131 20 C 0.051 3.949 21 N -0.329 5.329 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.251 4.251 25 N -0.581 5.581 26 Si 0.782 3.218 27 H -0.227 1.227 28 H -0.222 1.222 29 H -0.180 1.180 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.182 0.818 40 H 0.197 0.803 41 H 0.204 0.796 42 H 0.188 0.812 43 H 0.058 0.942 44 H 0.012 0.988 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.636 -8.106 -14.694 22.267 hybrid contribution -0.466 0.423 2.282 2.368 sum 14.170 -7.683 -12.411 20.343 Atomic orbital electron populations 1.21739 0.94787 1.01131 1.01078 1.20818 0.94274 0.93378 0.86778 0.96118 1.21950 0.94827 1.00819 0.98161 1.21641 0.96878 0.99964 0.95875 1.21460 0.79671 0.98908 0.97393 0.93288 1.45857 1.07461 1.27039 1.55636 1.21166 0.91530 0.80909 0.77296 1.90753 1.65323 1.44208 1.46194 1.20722 0.90633 0.96963 1.04997 1.19609 1.00884 0.98538 0.89673 1.21525 0.96035 0.89986 1.02558 1.21587 0.96959 1.00038 0.92023 1.21494 1.00311 0.95910 0.96510 1.18197 1.07820 0.95915 0.77007 1.91465 1.94703 1.97153 1.29448 1.18180 1.05115 0.82567 0.91992 1.91479 1.90313 1.49449 1.81819 1.20790 0.83644 0.95173 0.95311 1.44355 1.02572 1.65706 1.20261 1.19513 0.95148 1.36361 0.86765 0.90539 1.25779 0.98967 1.01269 0.99041 1.70152 1.24707 1.46828 1.16421 0.85464 0.79631 0.77902 0.78817 1.22746 1.22196 1.18011 0.93578 0.94474 0.90093 0.88467 0.92979 0.90888 0.89156 0.74744 0.86812 0.81761 0.80346 0.79647 0.81210 0.94176 0.98781 0.94936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 2 C 0.15 6.12 3.49 44.97 0.16 6.28 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.63 5.37 30.67 0.16 -3.46 16 5 C -0.11 -3.01 5.35 30.62 0.16 -2.85 16 6 C 0.13 5.12 2.61 45.07 0.12 5.24 16 7 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 8 N -0.71 -21.75 5.08 -442.17 -2.25 -24.00 16 9 C 0.50 17.13 7.78 87.66 0.68 17.81 16 10 O -0.59 -27.34 15.60 -3.03 -0.05 -27.39 16 11 C -0.09 -2.06 5.55 29.10 0.16 -1.90 16 12 C -0.09 -2.17 4.44 -19.83 -0.09 -2.26 16 13 C -0.08 -1.39 9.67 22.27 0.22 -1.17 16 14 C -0.09 -1.27 10.04 22.27 0.22 -1.05 16 15 C -0.12 -2.47 10.02 22.30 0.22 -2.24 16 16 C 0.03 0.92 7.31 22.41 0.16 1.09 16 17 F -0.15 -5.08 17.18 44.97 0.77 -4.30 16 18 C 0.04 1.39 7.12 22.41 0.16 1.55 16 19 F -0.15 -6.25 16.58 44.97 0.75 -5.50 16 20 C 0.18 9.18 4.87 86.36 0.42 9.60 16 21 N -0.60 -31.41 2.99 -675.25 -2.02 -33.43 16 22 C -0.25 -14.28 8.63 84.03 0.73 -13.55 16 23 H 0.08 4.23 6.20 -2.91 -0.02 4.21 16 24 C -0.06 -3.39 4.97 84.86 0.42 -2.97 16 25 N -0.93 -60.76 11.09 21.65 0.24 -60.52 16 26 Si 0.95 49.63 29.58 68.60 2.03 51.66 16 27 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 28 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 29 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 30 H 0.05 1.72 7.42 -2.39 -0.02 1.70 16 31 H 0.04 1.50 7.66 -2.39 -0.02 1.48 16 32 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.42 8.79 8.60 -92.71 -0.80 8.00 16 38 H 0.11 2.37 7.95 -2.39 -0.02 2.35 16 39 H 0.16 1.69 8.00 -2.39 -0.02 1.67 16 40 H 0.18 1.49 8.04 -2.91 -0.02 1.47 16 41 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.04 2.53 6.02 -2.39 -0.01 2.52 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -89.12 373.48 4.18 -84.95 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.22 Total: 12.60 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.48 Total: 5.94 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -4.03 Total: -117.94 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 1.52 Total: -9.81 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -89.12 4.18 -84.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.482 kcal (2) G-P(sol) polarization free energy of solvation -89.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds