Wall clock time and date at job start Tue Mar 31 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.57978 * 2 1 4 4 C 1.53189 * 109.58886 * 120.42465 * 2 1 3 5 5 C 1.53040 * 109.31388 * 174.42282 * 4 2 1 6 6 C 1.53071 * 109.66234 * 298.70484 * 5 4 2 7 7 H 1.08995 * 109.62538 * 181.16978 * 6 5 4 8 8 N 1.46497 * 109.38772 * 301.27747 * 6 5 4 9 9 C 1.34782 * 119.99954 * 204.74919 * 8 6 5 10 10 O 1.21283 * 120.00001 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00144 * 179.97438 * 9 8 6 12 12 C 1.50698 * 109.47295 * 179.97438 * 11 9 8 13 13 C 1.38247 * 120.00192 * 264.72626 * 12 11 9 14 14 C 1.38221 * 120.07231 * 179.76838 * 13 12 11 15 15 C 1.38260 * 120.06549 * 0.50759 * 14 13 12 16 16 C 1.38368 * 120.00223 * 359.74689 * 15 14 13 17 17 F 1.35096 * 120.03751 * 179.97438 * 16 15 14 18 18 C 1.38367 * 119.99401 * 85.00276 * 12 11 9 19 19 F 1.35100 * 120.04194 * 359.97438 * 18 12 11 20 20 C 1.53190 * 109.29468 * 61.14922 * 6 5 4 21 21 N 1.46925 * 108.89347 * 305.57863 * 20 6 5 22 22 C 1.36941 * 120.63294 * 233.51171 * 21 20 6 23 23 H 1.08001 * 119.99264 * 150.16293 * 22 21 20 24 24 C 1.38806 * 120.00166 * 330.16814 * 22 21 20 25 25 N 1.31624 * 120.00191 * 344.49933 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 164.49608 * 24 22 21 27 27 H 1.48503 * 109.47195 * 89.99708 * 26 24 22 28 28 H 1.48498 * 109.47355 * 210.00264 * 26 24 22 29 29 H 1.48504 * 109.46850 * 330.00278 * 26 24 22 30 30 H 1.09012 * 109.46617 * 180.28290 * 1 2 3 31 31 H 1.08994 * 109.47116 * 300.27725 * 1 2 3 32 32 H 1.08991 * 109.47215 * 60.28883 * 1 2 3 33 33 H 1.09001 * 109.50253 * 294.37740 * 4 2 1 34 34 H 1.09005 * 109.49620 * 54.44309 * 4 2 1 35 35 H 1.09002 * 109.45836 * 58.65674 * 5 4 2 36 36 H 1.09005 * 109.46320 * 178.62741 * 5 4 2 37 37 H 0.97001 * 120.00556 * 24.74626 * 8 6 5 38 38 H 1.08999 * 109.47372 * 300.00525 * 11 9 8 39 39 H 1.09000 * 109.46851 * 60.00058 * 11 9 8 40 40 H 1.07997 * 119.96717 * 0.02648 * 13 12 11 41 41 H 1.07992 * 119.96559 * 180.25742 * 14 13 12 42 42 H 1.07994 * 119.99896 * 179.72191 * 15 14 13 43 43 H 1.09000 * 109.58931 * 185.72541 * 20 6 5 44 44 H 1.08997 * 109.58704 * 65.43883 * 20 6 5 45 45 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1691 6 6 3.9603 -1.6639 -0.0660 7 1 5.0447 -1.7655 -0.1078 8 7 3.3468 -2.9919 0.0121 9 6 3.9027 -4.0306 -0.6427 10 8 4.9111 -3.8659 -1.2960 11 6 3.2719 -5.3969 -0.5619 12 6 4.0813 -6.3728 -1.3764 13 6 3.7194 -6.6514 -2.6813 14 6 4.4636 -7.5427 -3.4312 15 6 5.5654 -8.1654 -2.8745 16 6 5.9271 -7.8927 -1.5670 17 9 7.0032 -8.5011 -1.0222 18 6 5.1834 -6.9943 -0.8163 19 9 5.5348 -6.7265 0.4604 20 6 3.4651 -0.9451 -1.3249 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1099 -2.1704 23 1 0.1399 -1.3776 -1.9121 24 6 1.5763 -1.1835 -3.4906 25 7 2.6871 -0.5821 -3.8606 26 14 0.5686 -2.1363 -4.7420 27 1 -0.4253 -1.2296 -5.3709 28 1 1.4688 -2.6856 -5.7876 29 1 -0.1389 -3.2511 -4.0624 30 1 -0.3633 -1.0278 0.0051 31 1 -0.3633 0.5181 0.8874 32 1 -0.3633 0.5093 -0.8925 33 1 1.7661 -0.1695 2.1366 34 1 1.6026 -1.7267 1.2895 35 1 4.0061 0.1461 1.0995 36 1 3.9379 -1.3475 2.0651 37 1 2.5404 -3.1238 0.5349 38 1 3.2458 -5.7242 0.4774 39 1 2.2559 -5.3517 -0.9542 40 1 2.8568 -6.1690 -3.1165 41 1 4.1818 -7.7559 -4.4516 42 1 6.1434 -8.8650 -3.4599 43 1 3.6519 -1.5688 -2.1991 44 1 3.9901 0.0039 -1.4342 45 1 2.9822 -0.6332 -4.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:53 Heat of formation + Delta-G solvation = -102.405302 kcal Electronic energy + Delta-G solvation = -30472.807893 eV Core-core repulsion = 26125.795875 eV Total energy + Delta-G solvation = -4347.012017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.54066 -49.63034 -41.14669 -39.95496 -38.94241 -35.73929 -34.47162 -33.98702 -32.14354 -31.70627 -31.30638 -28.91559 -27.71092 -26.63674 -23.95893 -23.85516 -23.63903 -22.14386 -21.62949 -20.34744 -18.97849 -18.42174 -18.33569 -18.12872 -17.85867 -17.30191 -17.07049 -16.50558 -16.04734 -16.03965 -15.79337 -15.66635 -15.53096 -15.40077 -14.93880 -14.72770 -14.57619 -14.44581 -14.05413 -13.90411 -13.65773 -13.17050 -13.04013 -12.93966 -12.85813 -12.68254 -12.59871 -12.47143 -12.41246 -12.24860 -12.07581 -12.04398 -11.55942 -11.20160 -11.04269 -10.88976 -10.48532 -9.93380 -9.88670 -9.76427 -8.53283 -7.77545 -5.23946 -0.08260 -0.05606 1.46458 1.47238 1.56380 1.76945 2.19941 2.55024 2.59052 2.76515 3.25287 3.38375 3.43515 3.65971 3.72766 3.89337 3.97483 4.08108 4.12419 4.15045 4.20639 4.31178 4.48445 4.51846 4.66497 4.74515 4.77547 4.84054 4.85431 4.95602 4.98465 5.06243 5.12015 5.12777 5.13347 5.27578 5.28935 5.34188 5.59447 5.64044 5.73062 5.74530 5.76949 5.78530 6.48420 6.72781 7.22538 7.42757 7.96452 8.48917 9.28146 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.004123 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.477541 B = 6788.972163 C = 8313.815949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.129 3.871 7 H 0.058 0.942 8 N -0.691 5.691 9 C 0.509 3.491 10 O -0.589 6.589 11 C -0.098 4.098 12 C -0.079 4.079 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.121 4.121 16 C 0.045 3.955 17 F -0.140 7.140 18 C 0.055 3.945 19 F -0.140 7.140 20 C 0.175 3.825 21 N -0.593 5.593 22 C -0.238 4.238 23 H 0.079 0.921 24 C -0.055 4.055 25 N -0.940 5.940 26 Si 0.951 3.049 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.257 1.257 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.409 0.591 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.048 0.952 44 H -0.011 1.011 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -13.320 8.992 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.076 0.924 8 N -0.342 5.342 9 C 0.296 3.704 10 O -0.469 6.469 11 C -0.138 4.138 12 C -0.080 4.080 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.139 4.139 16 C 0.025 3.975 17 F -0.118 7.118 18 C 0.035 3.965 19 F -0.119 7.119 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.368 4.368 23 H 0.096 0.904 24 C -0.250 4.250 25 N -0.587 5.587 26 Si 0.780 3.220 27 H -0.218 1.218 28 H -0.230 1.230 29 H -0.182 1.182 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.246 0.754 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.192 0.808 42 H 0.192 0.808 43 H 0.067 0.933 44 H 0.007 0.993 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.626 -13.185 8.491 15.695 hybrid contribution 0.077 0.098 -0.698 0.709 sum -0.549 -13.086 7.793 15.241 Atomic orbital electron populations 1.21716 0.94527 1.01551 1.00689 1.20769 0.94276 0.93005 0.87188 0.97415 1.21939 0.94397 1.01273 0.97999 1.21661 0.97542 0.99697 0.95985 1.21434 0.96004 0.82772 0.97568 0.92423 1.45705 1.29962 1.07700 1.50794 1.20869 0.84037 0.87133 0.78382 1.90685 1.27588 1.85952 1.42713 1.20670 1.00776 0.89015 1.03314 1.19444 0.94940 0.97342 0.96312 1.21377 1.01136 0.97252 0.91804 1.21468 0.93211 0.94581 1.01602 1.21430 0.98863 1.01907 0.91732 1.17926 0.87475 0.97830 0.94236 1.91481 1.52674 1.81483 1.86199 1.17740 0.97686 1.00631 0.80406 1.91453 1.91629 1.93016 1.35764 1.20787 0.84266 0.94959 0.95174 1.44255 1.02118 1.65543 1.19812 1.19427 0.95387 1.35760 0.86233 0.90367 1.25811 0.98893 1.01226 0.99082 1.70191 1.26184 1.46160 1.16146 0.85509 0.77780 0.79386 0.79301 1.21766 1.23001 1.18157 0.92566 0.90813 0.94732 0.89379 0.91347 0.91375 0.89834 0.75357 0.85440 0.84763 0.83377 0.80824 0.80792 0.93331 0.99290 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.95 71.98 0.57 -3.53 16 2 C 0.15 5.60 3.50 44.97 0.16 5.75 16 3 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 4 C -0.12 -3.17 5.21 30.67 0.16 -3.01 16 5 C -0.11 -3.19 5.57 30.63 0.17 -3.02 16 6 C 0.13 4.85 2.82 45.08 0.13 4.98 16 7 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 8 N -0.69 -22.98 4.92 -442.12 -2.17 -25.15 16 9 C 0.51 18.33 7.79 87.66 0.68 19.01 16 10 O -0.59 -27.09 15.70 -3.04 -0.05 -27.14 16 11 C -0.10 -2.57 5.60 29.10 0.16 -2.40 16 12 C -0.08 -2.21 4.38 -19.83 -0.09 -2.30 16 13 C -0.10 -2.38 9.68 22.27 0.22 -2.17 16 14 C -0.09 -1.78 10.04 22.27 0.22 -1.56 16 15 C -0.12 -2.47 10.02 22.31 0.22 -2.25 16 16 C 0.05 1.22 7.31 22.41 0.16 1.39 16 17 F -0.14 -3.94 17.18 44.97 0.77 -3.17 16 18 C 0.06 1.66 7.25 22.41 0.16 1.82 16 19 F -0.14 -4.48 16.48 44.97 0.74 -3.74 16 20 C 0.18 8.54 4.88 86.36 0.42 8.96 16 21 N -0.59 -27.46 2.91 -675.23 -1.96 -29.43 16 22 C -0.24 -12.06 8.57 84.03 0.72 -11.34 16 23 H 0.08 3.75 6.24 -2.91 -0.02 3.73 16 24 C -0.06 -3.04 4.94 84.86 0.42 -2.62 16 25 N -0.94 -56.79 11.23 21.65 0.24 -56.55 16 26 Si 0.95 43.65 29.58 68.60 2.03 45.68 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 30 H 0.06 1.76 7.44 -2.38 -0.02 1.74 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.03 1.28 7.62 -2.39 -0.02 1.26 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.71 6.42 -2.38 -0.02 1.70 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.41 11.10 6.78 -92.71 -0.63 10.47 16 38 H 0.13 2.64 7.79 -2.39 -0.02 2.62 16 39 H 0.13 2.89 8.05 -2.39 -0.02 2.87 16 40 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.05 2.83 6.15 -2.39 -0.01 2.81 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -74.17 370.24 4.49 -69.68 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.39 Total: 22.09 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.50 Total: 7.72 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.90 Total: -111.13 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 1.51 Total: -6.90 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.17 4.49 -69.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds