Wall clock time and date at job start Tue Mar 31 2020 21:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.58323 * 2 1 4 4 C 1.53187 * 109.58617 * 239.71347 * 2 1 3 5 5 C 1.53042 * 109.31295 * 185.57693 * 4 2 1 6 6 C 1.53035 * 109.53500 * 61.36718 * 5 4 2 7 7 H 1.09005 * 109.49882 * 178.68626 * 6 5 4 8 8 N 1.46501 * 109.50113 * 58.58989 * 6 5 4 9 9 C 1.34770 * 120.00561 * 154.99866 * 8 6 5 10 10 O 1.21288 * 120.00083 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00090 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.46810 * 179.97438 * 11 9 8 13 13 C 1.38263 * 120.00009 * 100.00286 * 12 11 9 14 14 C 1.38206 * 120.07110 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.07260 * 0.05023 * 14 13 12 16 16 C 1.38370 * 119.99825 * 359.96839 * 15 14 13 17 17 F 1.35101 * 120.03409 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.00078 * 279.72160 * 12 11 9 19 19 F 1.35103 * 120.03746 * 0.02646 * 18 12 11 20 20 C 1.53200 * 109.31516 * 298.63305 * 6 5 4 21 21 N 1.46921 * 108.76974 * 54.63692 * 20 6 5 22 22 C 1.36946 * 120.63172 * 126.39267 * 21 20 6 23 23 H 1.07994 * 119.99711 * 209.01543 * 22 21 20 24 24 C 1.38808 * 119.99644 * 29.01479 * 22 21 20 25 25 N 1.31624 * 120.00407 * 15.01952 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.02298 * 24 22 21 27 27 H 1.48505 * 109.47083 * 59.99429 * 26 24 22 28 28 H 1.48497 * 109.47443 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47191 * 299.99961 * 26 24 22 30 30 H 1.08995 * 109.47207 * 180.28175 * 1 2 3 31 31 H 1.09000 * 109.47249 * 300.28987 * 1 2 3 32 32 H 1.09010 * 109.47104 * 60.28428 * 1 2 3 33 33 H 1.08992 * 109.50488 * 305.53148 * 4 2 1 34 34 H 1.09002 * 109.49573 * 65.63466 * 4 2 1 35 35 H 1.09003 * 109.46356 * 181.38752 * 5 4 2 36 36 H 1.09006 * 109.46009 * 301.34899 * 5 4 2 37 37 H 0.97002 * 119.99667 * 334.99398 * 8 6 5 38 38 H 1.09000 * 109.47092 * 299.99792 * 11 9 8 39 39 H 1.09003 * 109.46918 * 60.00210 * 11 9 8 40 40 H 1.08000 * 119.96200 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.96442 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.00309 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.58621 * 174.42012 * 20 6 5 44 44 H 1.08989 * 109.58522 * 294.84958 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1711 6 6 3.9568 -1.6658 0.0614 7 1 5.0412 -1.7697 0.1016 8 7 3.3405 -2.9924 -0.0184 9 6 3.8970 -4.0343 0.6306 10 8 4.9078 -3.8735 1.2813 11 6 3.2626 -5.3988 0.5488 12 6 4.0743 -6.3792 1.3557 13 6 3.6637 -6.7355 2.6269 14 6 4.4066 -7.6349 3.3680 15 6 5.5626 -8.1795 2.8401 16 6 5.9765 -7.8247 1.5683 17 9 7.1062 -8.3560 1.0520 18 6 5.2273 -6.9272 0.8221 19 9 5.6264 -6.5835 -0.4221 20 6 3.4650 -0.9485 1.3227 21 7 2.0225 -0.7010 1.1936 22 6 1.1535 -1.1158 2.1674 23 1 0.1359 -1.3699 1.9103 24 6 1.5808 -1.2095 3.4848 25 7 2.7040 -0.6318 3.8551 26 14 0.5618 -2.1556 4.7321 27 1 0.4323 -3.5691 4.2955 28 1 1.2307 -2.1066 6.0570 29 1 -0.7874 -1.5438 4.8353 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3634 0.5095 -0.8926 33 1 1.6030 -1.7237 -1.2935 34 1 1.7661 -0.1641 -2.1370 35 1 3.9378 -1.3423 -2.0685 36 1 4.0061 0.1488 -1.0991 37 1 2.5318 -3.1210 -0.5385 38 1 2.2486 -5.3524 0.9459 39 1 3.2310 -5.7231 -0.4914 40 1 2.7614 -6.3106 3.0413 41 1 4.0841 -7.9124 4.3607 42 1 6.1426 -8.8820 3.4204 43 1 3.6517 -1.5745 2.1953 44 1 3.9902 0.0002 1.4317 45 1 3.0027 -0.6976 4.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071851431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:56 Heat of formation + Delta-G solvation = -83.112880 kcal Electronic energy + Delta-G solvation = -30505.231808 eV Core-core repulsion = 26159.056372 eV Total energy + Delta-G solvation = -4346.175435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.42880 -48.50786 -39.77444 -38.78036 -37.45599 -34.10063 -32.88033 -32.73421 -30.71314 -30.31753 -29.89093 -27.77680 -26.07934 -24.94112 -22.85345 -22.61157 -22.16271 -20.67913 -20.21496 -18.72988 -17.89408 -17.31380 -17.03580 -16.87036 -16.28890 -16.07779 -15.45155 -15.00330 -14.88756 -14.87909 -14.48468 -14.34029 -14.00974 -13.89701 -13.57703 -13.38318 -13.19086 -13.00744 -12.75945 -12.49540 -12.21153 -12.05482 -11.93908 -11.57803 -11.28516 -11.22354 -11.17065 -10.96164 -10.88040 -10.72487 -10.40673 -10.34800 -9.97577 -9.57371 -9.47120 -9.38945 -8.87643 -8.73411 -8.46010 -8.34047 -6.60814 -5.75428 -3.19946 0.92742 0.93642 3.17219 3.27105 3.34252 3.39835 3.42698 3.76867 3.84535 4.32656 4.43094 4.47766 4.66881 4.89445 5.03671 5.21620 5.30814 5.31053 5.36147 5.47391 5.47554 5.50927 5.59817 5.71269 5.78865 5.92927 6.01345 6.07189 6.11407 6.15345 6.23327 6.32648 6.34106 6.44106 6.53138 6.60457 6.69709 6.72476 6.91027 7.03657 7.12030 7.40650 7.70635 7.82024 8.11427 8.48502 8.81140 9.22748 9.87381 10.43918 11.32329 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004153 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.078393 B = 6740.822875 C = 8257.098602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.517 3.483 10 O -0.540 6.540 11 C -0.107 4.107 12 C -0.063 4.063 13 C -0.087 4.087 14 C -0.100 4.100 15 C -0.130 4.130 16 C 0.063 3.937 17 F -0.133 7.133 18 C 0.084 3.916 19 F -0.127 7.127 20 C 0.162 3.838 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.897 3.103 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -11.738 -7.528 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.302 3.698 10 O -0.417 6.417 11 C -0.146 4.146 12 C -0.064 4.064 13 C -0.105 4.105 14 C -0.118 4.118 15 C -0.149 4.149 16 C 0.043 3.957 17 F -0.111 7.111 18 C 0.063 3.937 19 F -0.106 7.106 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.381 4.381 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.727 3.273 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.116 0.884 44 H 0.041 0.959 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.294 -11.580 -6.953 13.569 hybrid contribution -0.551 -0.456 0.207 0.745 sum 0.743 -12.036 -6.746 13.817 Atomic orbital electron populations 1.21794 0.96149 1.01207 1.00127 1.20457 0.92846 0.93630 0.87241 0.95850 1.22059 0.95158 1.00642 0.99044 1.21690 0.96991 1.00134 0.96860 1.21769 0.96930 0.81824 0.98172 0.90781 1.45781 1.29333 1.08518 1.51299 1.20039 0.84685 0.85519 0.79581 1.90709 1.25199 1.85052 1.40721 1.20655 1.00431 0.92028 1.01534 1.19301 0.94166 0.97185 0.95793 1.21100 1.00709 0.96473 0.92260 1.21035 0.93949 0.96507 1.00296 1.21035 0.98386 1.02152 0.93356 1.17610 0.85556 0.98529 0.94011 1.91506 1.48044 1.84668 1.86909 1.17435 0.95615 0.98878 0.81731 1.91503 1.90233 1.90936 1.37886 1.21185 0.83648 0.97053 0.94545 1.44044 1.02724 1.64696 1.19133 1.19040 0.94608 1.38201 0.86211 0.91487 1.25060 0.97649 0.99698 0.96930 1.69973 1.23123 1.44239 1.16933 0.86472 0.79637 0.80150 0.81068 1.21186 1.21715 1.21021 0.92951 0.92107 0.94457 0.92663 0.92923 0.93064 0.91193 0.77063 0.86898 0.87939 0.84079 0.84219 0.83937 0.88420 0.95857 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.94 37.16 0.30 -2.07 16 2 C 0.16 3.16 3.50 -67.60 -0.24 2.92 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.00 16 6 C 0.12 2.24 2.81 -67.81 -0.19 2.05 16 7 H 0.07 1.48 7.58 -51.93 -0.39 1.08 16 8 N -0.70 -12.07 4.91 -53.68 -0.26 -12.34 16 9 C 0.52 9.43 7.79 -10.99 -0.09 9.34 16 10 O -0.54 -12.09 15.62 5.55 0.09 -12.00 16 11 C -0.11 -1.47 5.56 -29.03 -0.16 -1.63 16 12 C -0.06 -0.91 4.42 -104.57 -0.46 -1.37 16 13 C -0.09 -1.12 9.67 -39.58 -0.38 -1.50 16 14 C -0.10 -1.09 10.04 -39.59 -0.40 -1.49 16 15 C -0.13 -1.48 10.02 -39.53 -0.40 -1.87 16 16 C 0.06 0.88 7.31 -39.36 -0.29 0.59 16 17 F -0.13 -1.91 17.18 2.25 0.04 -1.87 16 18 C 0.08 1.27 7.15 -39.37 -0.28 0.99 16 19 F -0.13 -2.06 16.57 2.25 0.04 -2.02 16 20 C 0.16 3.81 4.89 -3.71 -0.02 3.79 16 21 N -0.58 -13.45 2.91 -164.78 -0.48 -13.93 16 22 C -0.25 -6.38 8.61 -15.06 -0.13 -6.51 16 23 H 0.07 1.66 6.20 -52.49 -0.33 1.33 16 24 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -25.90 11.14 55.49 0.62 -25.29 16 26 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 0.91 7.40 -51.93 -0.38 0.52 16 31 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16 32 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.39 5.93 6.77 -40.82 -0.28 5.65 16 38 H 0.11 1.36 8.00 -51.93 -0.42 0.95 16 39 H 0.10 1.17 7.94 -51.93 -0.41 0.75 16 40 H 0.14 1.68 8.04 -52.49 -0.42 1.25 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.10 2.70 6.06 -51.93 -0.31 2.39 16 44 H 0.02 0.59 8.14 -51.94 -0.42 0.17 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.70 370.02 -8.71 -40.41 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.19 Total: 6.23 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.11 Total: -0.84 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.13 Total: -51.55 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.70 -8.71 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.699 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds