Wall clock time and date at job start Tue Mar 31 2020 21:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.58323 * 2 1 4 4 C 1.53187 * 109.58617 * 239.71347 * 2 1 3 5 5 C 1.53042 * 109.31295 * 185.57693 * 4 2 1 6 6 C 1.53035 * 109.53500 * 61.36718 * 5 4 2 7 7 H 1.09005 * 109.49882 * 178.68626 * 6 5 4 8 8 N 1.46501 * 109.50113 * 58.58989 * 6 5 4 9 9 C 1.34770 * 120.00561 * 154.99866 * 8 6 5 10 10 O 1.21288 * 120.00083 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00090 * 179.97438 * 9 8 6 12 12 C 1.50699 * 109.46810 * 179.97438 * 11 9 8 13 13 C 1.38263 * 120.00009 * 100.00286 * 12 11 9 14 14 C 1.38206 * 120.07110 * 179.97438 * 13 12 11 15 15 C 1.38259 * 120.07260 * 0.05023 * 14 13 12 16 16 C 1.38370 * 119.99825 * 359.96839 * 15 14 13 17 17 F 1.35101 * 120.03409 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.00078 * 279.72160 * 12 11 9 19 19 F 1.35103 * 120.03746 * 0.02646 * 18 12 11 20 20 C 1.53200 * 109.31516 * 298.63305 * 6 5 4 21 21 N 1.46921 * 108.76974 * 54.63692 * 20 6 5 22 22 C 1.36946 * 120.63172 * 126.39267 * 21 20 6 23 23 H 1.07994 * 119.99711 * 209.01543 * 22 21 20 24 24 C 1.38808 * 119.99644 * 29.01479 * 22 21 20 25 25 N 1.31624 * 120.00407 * 15.01952 * 24 22 21 26 26 Si 1.86800 * 119.99969 * 195.02298 * 24 22 21 27 27 H 1.48505 * 109.47083 * 59.99429 * 26 24 22 28 28 H 1.48497 * 109.47443 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47191 * 299.99961 * 26 24 22 30 30 H 1.08995 * 109.47207 * 180.28175 * 1 2 3 31 31 H 1.09000 * 109.47249 * 300.28987 * 1 2 3 32 32 H 1.09010 * 109.47104 * 60.28428 * 1 2 3 33 33 H 1.08992 * 109.50488 * 305.53148 * 4 2 1 34 34 H 1.09002 * 109.49573 * 65.63466 * 4 2 1 35 35 H 1.09003 * 109.46356 * 181.38752 * 5 4 2 36 36 H 1.09006 * 109.46009 * 301.34899 * 5 4 2 37 37 H 0.97002 * 119.99667 * 334.99398 * 8 6 5 38 38 H 1.09000 * 109.47092 * 299.99792 * 11 9 8 39 39 H 1.09003 * 109.46918 * 60.00210 * 11 9 8 40 40 H 1.08000 * 119.96200 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.96442 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.00309 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.58621 * 174.42012 * 20 6 5 44 44 H 1.08989 * 109.58522 * 294.84958 * 20 6 5 45 45 H 0.96994 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1711 6 6 3.9568 -1.6658 0.0614 7 1 5.0412 -1.7697 0.1016 8 7 3.3405 -2.9924 -0.0184 9 6 3.8970 -4.0343 0.6306 10 8 4.9078 -3.8735 1.2813 11 6 3.2626 -5.3988 0.5488 12 6 4.0743 -6.3792 1.3557 13 6 3.6637 -6.7355 2.6269 14 6 4.4066 -7.6349 3.3680 15 6 5.5626 -8.1795 2.8401 16 6 5.9765 -7.8247 1.5683 17 9 7.1062 -8.3560 1.0520 18 6 5.2273 -6.9272 0.8221 19 9 5.6264 -6.5835 -0.4221 20 6 3.4650 -0.9485 1.3227 21 7 2.0225 -0.7010 1.1936 22 6 1.1535 -1.1158 2.1674 23 1 0.1359 -1.3699 1.9103 24 6 1.5808 -1.2095 3.4848 25 7 2.7040 -0.6318 3.8551 26 14 0.5618 -2.1556 4.7321 27 1 0.4323 -3.5691 4.2955 28 1 1.2307 -2.1066 6.0570 29 1 -0.7874 -1.5438 4.8353 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3634 0.5095 -0.8926 33 1 1.6030 -1.7237 -1.2935 34 1 1.7661 -0.1641 -2.1370 35 1 3.9378 -1.3423 -2.0685 36 1 4.0061 0.1488 -1.0991 37 1 2.5318 -3.1210 -0.5385 38 1 2.2486 -5.3524 0.9459 39 1 3.2310 -5.7231 -0.4914 40 1 2.7614 -6.3106 3.0413 41 1 4.0841 -7.9124 4.3607 42 1 6.1426 -8.8820 3.4204 43 1 3.6517 -1.5745 2.1953 44 1 3.9902 0.0002 1.4317 45 1 3.0027 -0.6976 4.7755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071851431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:55 Heat of formation + Delta-G solvation = -101.825568 kcal Electronic energy + Delta-G solvation = -30506.043251 eV Core-core repulsion = 26159.056372 eV Total energy + Delta-G solvation = -4346.986878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.53360 -49.62411 -41.14369 -39.95481 -38.94486 -35.73694 -34.47716 -33.98454 -32.14832 -31.69475 -31.30371 -28.91250 -27.71048 -26.63863 -23.94543 -23.85350 -23.63774 -22.14351 -21.63357 -20.34447 -18.97182 -18.45358 -18.30439 -18.13088 -17.85078 -17.29667 -17.07182 -16.49915 -16.04890 -16.03442 -15.78590 -15.66971 -15.52771 -15.39028 -14.94115 -14.72428 -14.56709 -14.44156 -14.05554 -13.90554 -13.65875 -13.16350 -13.03857 -12.93808 -12.84296 -12.67681 -12.57332 -12.49885 -12.40093 -12.24725 -12.08251 -12.05556 -11.55977 -11.20473 -11.03990 -10.88783 -10.47076 -9.93540 -9.88236 -9.75838 -8.54140 -7.76747 -5.23104 -0.07698 -0.05271 1.47161 1.48262 1.55594 1.77296 2.20485 2.55398 2.58896 2.77530 3.26004 3.38703 3.43968 3.66046 3.73023 3.90043 3.97523 4.08206 4.12226 4.15792 4.20489 4.31843 4.48535 4.51973 4.66427 4.74497 4.77614 4.84065 4.85621 4.96210 4.98637 5.06159 5.11900 5.12919 5.13356 5.27552 5.28766 5.34205 5.59063 5.64350 5.73515 5.74903 5.77761 5.78768 6.48353 6.72962 7.22678 7.43087 7.96841 8.48735 9.28571 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004153 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.078393 B = 6740.822875 C = 8257.098602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.008 0.992 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.129 3.871 7 H 0.056 0.944 8 N -0.690 5.690 9 C 0.508 3.492 10 O -0.589 6.589 11 C -0.098 4.098 12 C -0.080 4.080 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.121 4.121 16 C 0.044 3.956 17 F -0.140 7.140 18 C 0.057 3.943 19 F -0.141 7.141 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.238 4.238 23 H 0.080 0.920 24 C -0.057 4.057 25 N -0.941 5.941 26 Si 0.953 3.047 27 H -0.267 1.267 28 H -0.307 1.307 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.409 0.591 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.176 0.824 42 H 0.175 0.825 43 H 0.051 0.949 44 H -0.011 1.011 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 -13.415 -9.036 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.026 0.974 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.075 0.925 8 N -0.341 5.341 9 C 0.295 3.705 10 O -0.470 6.470 11 C -0.137 4.137 12 C -0.082 4.082 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.140 4.140 16 C 0.024 3.976 17 F -0.119 7.119 18 C 0.037 3.963 19 F -0.119 7.119 20 C 0.047 3.953 21 N -0.317 5.317 22 C -0.368 4.368 23 H 0.097 0.903 24 C -0.251 4.251 25 N -0.588 5.588 26 Si 0.782 3.218 27 H -0.193 1.193 28 H -0.234 1.234 29 H -0.202 1.202 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.192 0.808 43 H 0.070 0.930 44 H 0.007 0.993 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.906 -13.269 -8.528 15.799 hybrid contribution 0.118 0.131 0.681 0.704 sum -0.788 -13.138 -7.846 15.323 Atomic orbital electron populations 1.21718 0.94510 1.01561 1.00694 1.20763 0.94278 0.93001 0.87190 0.97390 1.21944 0.94392 1.01286 0.98009 1.21657 0.97575 0.99652 0.96008 1.21425 0.95942 0.82835 0.97607 0.92538 1.45691 1.29691 1.07640 1.51108 1.20880 0.84087 0.87154 0.78346 1.90686 1.27509 1.86028 1.42743 1.20675 1.00698 0.88956 1.03412 1.19467 0.94353 0.97663 0.96697 1.21397 1.01412 0.96910 0.91870 1.21473 0.93043 0.94988 1.01350 1.21439 0.98438 1.01829 0.92250 1.17949 0.85573 0.99003 0.95085 1.91480 1.48446 1.84787 1.87193 1.17757 0.96647 1.00177 0.81755 1.91452 1.90489 1.91255 1.38746 1.20822 0.84217 0.95009 0.95262 1.44259 1.02135 1.65324 1.20017 1.19421 0.95066 1.35900 0.86438 0.90284 1.25805 0.98837 1.01429 0.99041 1.70184 1.25408 1.46845 1.16333 0.85547 0.78189 0.79885 0.78181 1.19285 1.23446 1.20223 0.92551 0.94752 0.90783 0.91355 0.89379 0.89878 0.91366 0.75370 0.84809 0.85353 0.83153 0.80690 0.80800 0.93027 0.99323 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 7.94 71.98 0.57 -3.53 16 2 C 0.15 5.61 3.50 44.97 0.16 5.76 16 3 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 4 C -0.12 -3.19 5.21 30.67 0.16 -3.03 16 5 C -0.11 -3.22 5.59 30.62 0.17 -3.04 16 6 C 0.13 4.88 2.81 45.07 0.13 5.01 16 7 H 0.06 2.35 7.58 -2.38 -0.02 2.33 16 8 N -0.69 -23.18 4.91 -442.15 -2.17 -25.35 16 9 C 0.51 18.49 7.79 87.66 0.68 19.17 16 10 O -0.59 -27.36 15.62 -3.06 -0.05 -27.40 16 11 C -0.10 -2.57 5.56 29.10 0.16 -2.41 16 12 C -0.08 -2.26 4.42 -19.83 -0.09 -2.35 16 13 C -0.10 -2.36 9.67 22.27 0.22 -2.14 16 14 C -0.09 -1.75 10.04 22.27 0.22 -1.53 16 15 C -0.12 -2.49 10.02 22.31 0.22 -2.26 16 16 C 0.04 1.20 7.31 22.41 0.16 1.37 16 17 F -0.14 -4.03 17.18 44.97 0.77 -3.26 16 18 C 0.06 1.73 7.15 22.41 0.16 1.89 16 19 F -0.14 -4.63 16.57 44.97 0.75 -3.89 16 20 C 0.17 8.52 4.89 86.37 0.42 8.94 16 21 N -0.59 -27.52 2.91 -675.24 -1.96 -29.48 16 22 C -0.24 -12.09 8.61 84.03 0.72 -11.36 16 23 H 0.08 3.79 6.20 -2.91 -0.02 3.77 16 24 C -0.06 -3.10 4.96 84.86 0.42 -2.68 16 25 N -0.94 -56.95 11.14 21.65 0.24 -56.71 16 26 Si 0.95 43.71 29.58 68.60 2.03 45.74 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 29 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.06 1.76 7.40 -2.39 -0.02 1.75 16 31 H 0.03 1.26 7.66 -2.39 -0.02 1.25 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.41 11.20 6.77 -92.71 -0.63 10.57 16 38 H 0.13 2.91 8.00 -2.39 -0.02 2.89 16 39 H 0.13 2.65 7.94 -2.39 -0.02 2.63 16 40 H 0.15 3.26 8.04 -2.91 -0.02 3.24 16 41 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.05 3.02 6.06 -2.39 -0.01 3.01 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -74.56 370.02 4.49 -70.07 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.40 Total: 22.49 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 4.50 Total: 7.80 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -3.90 Total: -111.54 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 1.52 Total: -7.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.56 4.49 -70.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071851431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.757 kcal (2) G-P(sol) polarization free energy of solvation -74.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds