Wall clock time and date at job start Tue Mar 31 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 C 1.50703 * 109.47224 * 119.99856 * 2 1 3 5 5 N 1.31238 * 124.05621 * 299.97467 * 4 2 1 6 6 N 1.27334 * 120.04094 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.73861 * 0.02562 * 6 5 4 8 8 C 1.38242 * 124.05539 * 119.97432 * 4 2 1 9 9 C 1.47176 * 128.47509 * 0.02562 * 8 4 2 10 10 O 1.21620 * 119.99922 * 0.02990 * 9 8 4 11 11 N 1.34770 * 119.99934 * 180.02562 * 9 8 4 12 12 C 1.46503 * 120.00169 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49498 * 324.99977 * 12 11 9 14 14 C 1.53041 * 109.49927 * 204.93583 * 12 11 9 15 15 C 1.53042 * 109.53747 * 178.71060 * 14 12 11 16 16 C 1.53187 * 109.33724 * 61.31977 * 15 14 12 17 17 H 1.09001 * 109.59092 * 65.16429 * 16 15 14 18 18 C 1.53001 * 109.58744 * 185.59180 * 16 15 14 19 19 N 1.46931 * 108.77697 * 305.37877 * 16 15 14 20 20 C 1.36934 * 120.62870 * 233.63210 * 19 16 15 21 21 H 1.08000 * 120.00167 * 41.16290 * 20 19 16 22 22 C 1.38809 * 119.99829 * 221.15894 * 20 19 16 23 23 N 1.31625 * 120.00038 * 214.83526 * 22 20 19 24 24 Si 1.86799 * 120.00184 * 34.83995 * 22 20 19 25 25 H 1.48499 * 109.47109 * 84.62520 * 24 22 20 26 26 H 1.48499 * 109.47265 * 204.62982 * 24 22 20 27 27 H 1.48504 * 109.46916 * 324.62644 * 24 22 20 28 28 C 1.46919 * 118.73821 * 53.60972 * 19 16 15 29 29 H 1.08998 * 109.47320 * 299.99993 * 1 2 3 30 30 H 1.08997 * 109.46854 * 59.99869 * 1 2 3 31 31 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47320 * 240.00006 * 2 1 3 33 33 H 1.08997 * 109.47527 * 299.99719 * 3 2 1 34 34 H 1.09000 * 109.47509 * 60.00617 * 3 2 1 35 35 H 1.09007 * 109.46939 * 179.97438 * 3 2 1 36 36 H 0.96999 * 120.00332 * 0.02562 * 11 9 8 37 37 H 1.08993 * 109.45927 * 298.70447 * 14 12 11 38 38 H 1.09003 * 109.45707 * 58.66400 * 14 12 11 39 39 H 1.08999 * 109.47490 * 301.36564 * 15 14 12 40 40 H 1.08996 * 109.52115 * 181.30053 * 15 14 12 41 41 H 1.09002 * 109.46973 * 179.29276 * 18 16 15 42 42 H 1.09005 * 109.46815 * 299.28973 * 18 16 15 43 43 H 1.09002 * 109.46913 * 59.28611 * 18 16 15 44 44 H 0.97005 * 120.00066 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.59004 * 186.61049 * 28 19 16 46 46 H 1.08995 * 109.71055 * 66.24836 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7652 -0.3317 2.4583 6 7 2.2302 -0.9902 3.4440 7 16 3.0821 -2.1958 2.9201 8 6 2.8299 -1.8392 1.2013 9 6 3.3443 -2.5669 0.0301 10 8 3.0737 -2.1826 -1.0916 11 7 4.1153 -3.6590 0.2006 12 6 4.6279 -4.3832 -0.9653 13 1 3.8877 -4.3555 -1.7650 14 6 4.9097 -5.8373 -0.5802 15 6 5.4148 -6.6026 -1.8055 16 6 6.7208 -5.9698 -2.2959 17 1 7.4953 -6.0976 -1.5397 18 6 7.1576 -6.6403 -3.6000 19 7 6.4934 -4.5373 -2.5307 20 6 6.8047 -3.9701 -3.7376 21 1 6.5816 -4.4952 -4.6546 22 6 7.4070 -2.7203 -3.7823 23 7 7.1173 -1.8846 -4.7570 24 14 8.6289 -2.2245 -2.4592 25 1 9.9767 -2.7379 -2.8126 26 1 8.6743 -0.7437 -2.3571 27 1 8.2069 -2.7977 -1.1558 28 6 5.9251 -3.7252 -1.4463 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 4.3309 -3.9657 1.0952 37 1 5.6675 -5.8652 0.2027 38 1 3.9930 -6.3003 -0.2148 39 1 4.6674 -6.5545 -2.5975 40 1 5.5934 -7.6436 -1.5366 41 1 8.0803 -6.1802 -3.9538 42 1 7.3258 -7.7027 -3.4236 43 1 6.3779 -6.5157 -4.3515 44 1 7.5379 -1.0111 -4.7880 45 1 5.7111 -2.7220 -1.8146 46 1 6.6336 -3.6677 -0.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071919335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:49 Heat of formation + Delta-G solvation = 47.226425 kcal Electronic energy + Delta-G solvation = -28038.870943 eV Core-core repulsion = 24284.480582 eV Total energy + Delta-G solvation = -3754.390361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23106 -39.70662 -37.88375 -35.69169 -34.69310 -32.86096 -31.73217 -30.76852 -30.49515 -27.68593 -27.20833 -26.18849 -24.97539 -23.42681 -22.54431 -21.89208 -20.74653 -20.44486 -19.40409 -18.05308 -17.50857 -16.60109 -16.10053 -15.92653 -15.43625 -15.05971 -14.64620 -14.38449 -14.30573 -14.10023 -13.87380 -13.49458 -13.22698 -13.12840 -13.04197 -12.53471 -12.47866 -12.23076 -12.13058 -11.84235 -11.57014 -11.34666 -11.31347 -11.24577 -11.03201 -10.82694 -10.66151 -10.55998 -10.47750 -10.31002 -10.10547 -9.99817 -9.88437 -9.83199 -9.78334 -9.53882 -8.96960 -8.34274 -6.74267 -6.08804 -3.39787 -0.42411 0.62566 1.28988 1.80709 2.95008 3.02993 3.38289 3.49063 3.52131 3.71476 4.35474 4.54925 4.59656 4.90544 4.94080 5.05265 5.05915 5.11322 5.19820 5.38543 5.43525 5.59515 5.61282 5.72929 5.77004 5.81028 5.89167 5.99263 6.00965 6.09407 6.16949 6.22092 6.24779 6.29625 6.34598 6.44789 6.52974 6.54373 6.67391 6.89071 7.01674 7.10794 7.39317 7.52753 8.00984 8.12870 8.42430 8.97674 9.70859 10.17699 11.06245 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.003846 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.214037 B = 7279.143068 C = 8177.008745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C -0.142 4.142 4 C 0.107 3.893 5 N -0.243 5.243 6 N -0.257 5.257 7 S 0.398 5.602 8 C -0.279 4.279 9 C 0.595 3.405 10 O -0.497 6.497 11 N -0.713 5.713 12 C 0.123 3.877 13 H 0.096 0.904 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.161 3.839 17 H 0.027 0.973 18 C -0.134 4.134 19 N -0.589 5.589 20 C -0.278 4.278 21 H 0.078 0.922 22 C 0.055 3.945 23 N -0.873 5.873 24 Si 0.841 3.159 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.263 1.263 28 C 0.138 3.862 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.264 0.736 45 H 0.073 0.927 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 -3.586 14.129 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.040 4.040 5 N -0.109 5.109 6 N -0.237 5.237 7 S 0.534 5.466 8 C -0.420 4.420 9 C 0.377 3.623 10 O -0.372 6.372 11 N -0.364 5.364 12 C 0.019 3.981 13 H 0.114 0.886 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.056 3.944 17 H 0.045 0.955 18 C -0.191 4.191 19 N -0.313 5.313 20 C -0.406 4.406 21 H 0.096 0.904 22 C -0.149 4.149 23 N -0.511 5.511 24 Si 0.668 3.332 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.188 1.188 28 C 0.011 3.989 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.226 0.774 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.467 -3.171 15.165 18.156 hybrid contribution 0.846 0.516 -0.003 0.991 sum -8.621 -2.655 15.162 17.643 Atomic orbital electron populations 1.21793 0.93209 1.02131 1.02637 1.20213 0.96574 0.96325 0.92176 1.21804 1.01428 0.94119 1.02597 1.22971 0.94457 0.92410 0.94131 1.70522 1.19971 1.24146 0.96241 1.78917 1.13459 1.07024 1.24296 1.82464 1.40289 1.28830 0.95001 1.27944 1.09953 1.04200 0.99871 1.16456 0.79004 0.80541 0.86255 1.90852 1.57691 1.65630 1.23056 1.46066 1.51256 1.28442 1.10665 1.22006 0.98831 0.90879 0.86424 0.88643 1.21697 1.00491 0.94371 0.99003 1.22022 0.99793 0.97880 0.96832 1.20633 0.92858 0.85398 0.95549 0.95527 1.21762 1.02492 0.97226 0.97670 1.44257 1.70770 1.03487 1.12765 1.18548 1.36100 1.01764 0.84173 0.90438 1.25575 0.97626 0.96222 0.95473 1.70091 1.39943 1.06386 1.34660 0.87402 0.84666 0.76610 0.84537 1.21440 1.22415 1.18772 1.21648 0.90226 0.95819 0.91175 0.92011 0.91287 0.92705 0.85628 0.91225 0.92032 0.92478 0.77414 0.92065 0.92428 0.91598 0.92250 0.91772 0.94311 0.92453 0.92673 0.90902 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.16 37.16 0.34 -1.16 16 2 C -0.03 -0.40 3.25 -91.77 -0.30 -0.70 16 3 C -0.14 -1.66 9.16 37.16 0.34 -1.32 16 4 C 0.11 1.45 5.53 -82.84 -0.46 1.00 16 5 N -0.24 -3.32 11.51 33.42 0.38 -2.94 16 6 N -0.26 -3.27 12.51 60.35 0.75 -2.51 16 7 S 0.40 4.05 23.05 -107.50 -2.48 1.57 16 8 C -0.28 -3.69 6.81 -35.95 -0.24 -3.94 16 9 C 0.60 9.23 7.77 -12.63 -0.10 9.13 16 10 O -0.50 -9.56 14.21 5.26 0.07 -9.49 16 11 N -0.71 -9.89 5.08 -54.84 -0.28 -10.16 16 12 C 0.12 2.05 2.60 -67.81 -0.18 1.87 16 13 H 0.10 1.83 7.58 -51.93 -0.39 1.43 16 14 C -0.12 -1.59 5.36 -26.69 -0.14 -1.73 16 15 C -0.13 -1.86 5.37 -26.61 -0.14 -2.01 16 16 C 0.16 2.96 3.50 -67.60 -0.24 2.72 16 17 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.13 -2.36 8.07 37.16 0.30 -2.06 16 19 N -0.59 -13.23 2.47 -164.78 -0.41 -13.64 16 20 C -0.28 -7.41 8.42 -15.06 -0.13 -7.54 16 21 H 0.08 2.21 6.83 -52.49 -0.36 1.85 16 22 C 0.05 1.53 4.82 -17.43 -0.08 1.45 16 23 N -0.87 -26.08 13.97 55.49 0.78 -25.30 16 24 Si 0.84 21.22 27.39 -169.99 -4.66 16.57 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 27 H -0.26 -6.32 5.24 56.52 0.30 -6.02 16 28 C 0.14 2.90 4.17 -3.71 -0.02 2.88 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.88 5.49 -51.93 -0.29 1.59 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.39 4.10 8.03 -40.82 -0.33 3.77 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.24 7.68 -51.93 -0.40 0.85 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.06 7.42 -51.93 -0.39 0.68 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.79 7.02 -51.93 -0.36 1.42 16 46 H 0.02 0.51 6.71 -51.93 -0.35 0.16 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.38 376.38 -8.38 -39.76 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.18 Total: 1.87 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.04 Total: -1.40 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 1.23 Total: -54.55 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.66 Total: 16.57 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.48 Total: 1.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.38 -8.38 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.986 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds