Wall clock time and date at job start Tue Mar 31 2020 21:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46795 * 2 1 4 4 C 1.50703 * 109.47224 * 119.99856 * 2 1 3 5 5 N 1.31238 * 124.05621 * 299.97467 * 4 2 1 6 6 N 1.27334 * 120.04094 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.73861 * 0.02562 * 6 5 4 8 8 C 1.38242 * 124.05539 * 119.97432 * 4 2 1 9 9 C 1.47176 * 128.47509 * 0.02562 * 8 4 2 10 10 O 1.21620 * 119.99922 * 0.02990 * 9 8 4 11 11 N 1.34770 * 119.99934 * 180.02562 * 9 8 4 12 12 C 1.46503 * 120.00169 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.49498 * 324.99977 * 12 11 9 14 14 C 1.53041 * 109.49927 * 204.93583 * 12 11 9 15 15 C 1.53042 * 109.53747 * 178.71060 * 14 12 11 16 16 C 1.53187 * 109.33724 * 61.31977 * 15 14 12 17 17 H 1.09001 * 109.59092 * 65.16429 * 16 15 14 18 18 C 1.53001 * 109.58744 * 185.59180 * 16 15 14 19 19 N 1.46931 * 108.77697 * 305.37877 * 16 15 14 20 20 C 1.36934 * 120.62870 * 233.63210 * 19 16 15 21 21 H 1.08000 * 120.00167 * 41.16290 * 20 19 16 22 22 C 1.38809 * 119.99829 * 221.15894 * 20 19 16 23 23 N 1.31625 * 120.00038 * 214.83526 * 22 20 19 24 24 Si 1.86799 * 120.00184 * 34.83995 * 22 20 19 25 25 H 1.48499 * 109.47109 * 84.62520 * 24 22 20 26 26 H 1.48499 * 109.47265 * 204.62982 * 24 22 20 27 27 H 1.48504 * 109.46916 * 324.62644 * 24 22 20 28 28 C 1.46919 * 118.73821 * 53.60972 * 19 16 15 29 29 H 1.08998 * 109.47320 * 299.99993 * 1 2 3 30 30 H 1.08997 * 109.46854 * 59.99869 * 1 2 3 31 31 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47320 * 240.00006 * 2 1 3 33 33 H 1.08997 * 109.47527 * 299.99719 * 3 2 1 34 34 H 1.09000 * 109.47509 * 60.00617 * 3 2 1 35 35 H 1.09007 * 109.46939 * 179.97438 * 3 2 1 36 36 H 0.96999 * 120.00332 * 0.02562 * 11 9 8 37 37 H 1.08993 * 109.45927 * 298.70447 * 14 12 11 38 38 H 1.09003 * 109.45707 * 58.66400 * 14 12 11 39 39 H 1.08999 * 109.47490 * 301.36564 * 15 14 12 40 40 H 1.08996 * 109.52115 * 181.30053 * 15 14 12 41 41 H 1.09002 * 109.46973 * 179.29276 * 18 16 15 42 42 H 1.09005 * 109.46815 * 299.28973 * 18 16 15 43 43 H 1.09002 * 109.46913 * 59.28611 * 18 16 15 44 44 H 0.97005 * 120.00066 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.59004 * 186.61049 * 28 19 16 46 46 H 1.08995 * 109.71055 * 66.24836 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7652 -0.3317 2.4583 6 7 2.2302 -0.9902 3.4440 7 16 3.0821 -2.1958 2.9201 8 6 2.8299 -1.8392 1.2013 9 6 3.3443 -2.5669 0.0301 10 8 3.0737 -2.1826 -1.0916 11 7 4.1153 -3.6590 0.2006 12 6 4.6279 -4.3832 -0.9653 13 1 3.8877 -4.3555 -1.7650 14 6 4.9097 -5.8373 -0.5802 15 6 5.4148 -6.6026 -1.8055 16 6 6.7208 -5.9698 -2.2959 17 1 7.4953 -6.0976 -1.5397 18 6 7.1576 -6.6403 -3.6000 19 7 6.4934 -4.5373 -2.5307 20 6 6.8047 -3.9701 -3.7376 21 1 6.5816 -4.4952 -4.6546 22 6 7.4070 -2.7203 -3.7823 23 7 7.1173 -1.8846 -4.7570 24 14 8.6289 -2.2245 -2.4592 25 1 9.9767 -2.7379 -2.8126 26 1 8.6743 -0.7437 -2.3571 27 1 8.2069 -2.7977 -1.1558 28 6 5.9251 -3.7252 -1.4463 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 4.3309 -3.9657 1.0952 37 1 5.6675 -5.8652 0.2027 38 1 3.9930 -6.3003 -0.2148 39 1 4.6674 -6.5545 -2.5975 40 1 5.5934 -7.6436 -1.5366 41 1 8.0803 -6.1802 -3.9538 42 1 7.3258 -7.7027 -3.4236 43 1 6.3779 -6.5157 -4.3515 44 1 7.5379 -1.0111 -4.7880 45 1 5.7111 -2.7220 -1.8146 46 1 6.6336 -3.6677 -0.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071919335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:48 Heat of formation + Delta-G solvation = 25.786150 kcal Electronic energy + Delta-G solvation = -28039.800663 eV Core-core repulsion = 24284.480582 eV Total energy + Delta-G solvation = -3755.320081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24694 -40.98586 -39.33517 -36.70359 -36.09038 -34.65004 -32.94608 -32.53406 -31.70370 -28.77379 -28.11364 -27.71596 -26.60239 -24.66528 -24.00296 -22.94792 -22.09751 -21.67547 -20.90835 -19.04818 -18.67894 -18.42383 -17.35153 -17.14211 -16.79423 -16.37234 -16.18828 -15.77742 -15.58924 -15.27626 -15.21013 -15.01274 -14.58399 -14.41402 -14.13842 -14.11590 -13.74022 -13.47596 -13.37261 -13.09487 -12.97717 -12.74278 -12.60929 -12.46730 -12.28925 -12.27413 -12.11133 -12.01360 -11.77933 -11.64845 -11.51478 -11.42479 -11.23023 -10.99045 -10.95829 -10.83502 -10.55661 -10.22435 -8.60093 -8.25411 -5.50737 -1.42515 -0.33357 0.34685 0.77126 1.33234 1.39686 1.46592 1.75577 1.85519 2.46362 2.70962 2.95626 3.34320 3.43764 3.62266 3.87059 3.93825 4.07657 4.09868 4.11376 4.16986 4.33859 4.47993 4.61967 4.69017 4.72764 4.74362 4.85777 4.87784 4.88341 5.00690 5.01828 5.07465 5.10396 5.14281 5.21590 5.25034 5.28125 5.34280 5.41011 5.57557 5.69561 5.94721 6.26165 6.31311 6.52373 6.97409 7.04648 7.68732 8.16912 8.94513 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.003846 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.214037 B = 7279.143068 C = 8177.008745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.036 4.036 3 C -0.137 4.137 4 C 0.105 3.895 5 N -0.261 5.261 6 N -0.279 5.279 7 S 0.510 5.490 8 C -0.312 4.312 9 C 0.596 3.404 10 O -0.544 6.544 11 N -0.699 5.699 12 C 0.136 3.864 13 H 0.064 0.936 14 C -0.109 4.109 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.043 0.957 18 C -0.129 4.129 19 N -0.604 5.604 20 C -0.257 4.257 21 H 0.046 0.954 22 C -0.003 4.003 23 N -0.927 5.927 24 Si 0.899 3.101 25 H -0.287 1.287 26 H -0.309 1.309 27 H -0.241 1.241 28 C 0.140 3.860 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.413 0.587 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.260 0.740 45 H 0.025 0.975 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 -6.058 18.115 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.044 4.044 5 N -0.125 5.125 6 N -0.260 5.260 7 S 0.646 5.354 8 C -0.453 4.453 9 C 0.380 3.620 10 O -0.422 6.422 11 N -0.351 5.351 12 C 0.030 3.970 13 H 0.082 0.918 14 C -0.147 4.147 15 C -0.158 4.158 16 C 0.047 3.953 17 H 0.061 0.939 18 C -0.187 4.187 19 N -0.329 5.329 20 C -0.386 4.386 21 H 0.063 0.937 22 C -0.201 4.201 23 N -0.569 5.569 24 Si 0.726 3.274 25 H -0.214 1.214 26 H -0.237 1.237 27 H -0.165 1.165 28 C 0.013 3.987 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.609 -5.696 19.239 22.247 hybrid contribution 0.871 1.162 -1.199 1.883 sum -8.738 -4.535 18.040 20.551 Atomic orbital electron populations 1.21751 0.91623 1.02187 1.03529 1.20188 0.97940 0.96472 0.91218 1.21778 1.00362 0.93802 1.03580 1.23076 0.94315 0.92536 0.94431 1.70599 1.21047 1.24858 0.96019 1.78644 1.14257 1.08321 1.24786 1.81986 1.36822 1.25618 0.90952 1.27743 1.11226 1.04834 1.01483 1.16726 0.78515 0.80443 0.86295 1.90844 1.59304 1.66806 1.25269 1.45795 1.50549 1.27765 1.11016 1.21572 0.95492 0.93079 0.86812 0.91814 1.21700 1.02891 0.91163 0.98952 1.21943 0.97021 0.99926 0.96931 1.20956 0.95489 0.82635 0.96232 0.93945 1.21715 1.00372 0.99606 0.97000 1.44414 1.71320 1.05487 1.11664 1.18459 1.33935 1.01063 0.85178 0.93667 1.26107 0.99615 0.96761 0.97648 1.70199 1.42096 1.06990 1.37603 0.86465 0.82296 0.75510 0.83173 1.21438 1.23681 1.16455 1.21541 0.92594 0.93913 0.90667 0.91403 0.90044 0.93049 0.88216 0.90033 0.91213 0.94058 0.74927 0.89547 0.89017 0.93242 0.88175 0.94461 0.90125 0.94482 0.93122 0.95618 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.16 71.98 0.66 -2.17 16 2 C -0.04 -0.95 3.25 -11.54 -0.04 -0.99 16 3 C -0.14 -3.28 9.16 71.98 0.66 -2.62 16 4 C 0.10 2.79 5.53 42.65 0.24 3.02 16 5 N -0.26 -6.78 11.51 -48.18 -0.55 -7.34 16 6 N -0.28 -6.43 12.51 37.02 0.46 -5.97 16 7 S 0.51 8.68 23.05 -56.49 -1.30 7.38 16 8 C -0.31 -7.91 6.81 24.62 0.17 -7.74 16 9 C 0.60 18.33 7.77 86.59 0.67 19.00 16 10 O -0.54 -21.96 14.21 -4.09 -0.06 -22.02 16 11 N -0.70 -17.92 5.08 -445.67 -2.26 -20.18 16 12 C 0.14 4.32 2.60 45.07 0.12 4.44 16 13 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 14 C -0.11 -2.44 5.36 30.62 0.16 -2.28 16 15 C -0.12 -3.07 5.37 30.67 0.16 -2.90 16 16 C 0.15 5.19 3.50 44.97 0.16 5.35 16 17 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 18 C -0.13 -4.42 8.07 71.98 0.58 -3.84 16 19 N -0.60 -27.09 2.47 -675.25 -1.67 -28.76 16 20 C -0.26 -14.23 8.42 84.03 0.71 -13.53 16 21 H 0.05 2.75 6.83 -2.91 -0.02 2.73 16 22 C 0.00 -0.15 4.82 84.86 0.41 0.26 16 23 N -0.93 -58.64 13.97 21.65 0.30 -58.34 16 24 Si 0.90 45.11 27.39 68.60 1.88 46.99 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 27 H -0.24 -11.01 5.24 99.48 0.52 -10.49 16 28 C 0.14 5.79 4.17 86.37 0.36 6.15 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 3.19 5.49 -2.39 -0.01 3.18 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.41 6.95 8.03 -92.71 -0.74 6.21 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.44 7.68 -2.39 -0.02 1.42 16 42 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.04 1.38 7.42 -2.39 -0.02 1.36 16 44 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 45 H 0.03 1.29 7.02 -2.39 -0.02 1.27 16 46 H 0.03 1.35 6.71 -2.39 -0.02 1.33 16 Total: -1.00 -74.50 376.38 1.89 -72.62 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.07 Total: 13.48 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.02 Total: 2.15 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -3.72 Total: -120.58 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Atomic # 16 Polarization: 8.68 SS G_CDS: -1.30 Total: 7.38 kcal Total: -74.50 1.89 -72.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.402 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds