Wall clock time and date at job start Tue Mar 31 2020 21:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47300 * 2 1 4 4 C 1.50699 * 109.46728 * 120.00288 * 2 1 3 5 5 N 1.31237 * 124.05512 * 300.01913 * 4 2 1 6 6 N 1.27339 * 120.03698 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.74041 * 359.69007 * 6 5 4 8 8 C 1.38248 * 124.05478 * 120.00151 * 4 2 1 9 9 C 1.47176 * 128.47419 * 0.02562 * 8 4 2 10 10 O 1.21620 * 119.99913 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99540 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99776 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50123 * 34.93698 * 12 11 9 14 14 C 1.53039 * 109.50087 * 155.00360 * 12 11 9 15 15 C 1.53039 * 109.54024 * 58.58338 * 14 12 11 16 16 C 1.53193 * 109.30814 * 61.36836 * 15 14 12 17 17 H 1.08998 * 109.70321 * 65.22616 * 16 15 14 18 18 C 1.53005 * 109.58255 * 185.58130 * 16 15 14 19 19 N 1.46924 * 108.77733 * 305.36240 * 16 15 14 20 20 C 1.36939 * 120.63378 * 233.58745 * 19 16 15 21 21 H 1.08002 * 120.00003 * 47.06726 * 20 19 16 22 22 C 1.38816 * 119.99975 * 227.06902 * 20 19 16 23 23 N 1.31612 * 119.99830 * 209.39599 * 22 20 19 24 24 Si 1.86797 * 119.99902 * 29.66466 * 22 20 19 25 25 H 1.48496 * 109.46997 * 84.97027 * 24 22 20 26 26 H 1.48505 * 109.46760 * 204.96436 * 24 22 20 27 27 H 1.48497 * 109.47496 * 324.96861 * 24 22 20 28 28 C 1.46927 * 118.73626 * 53.86588 * 19 16 15 29 29 H 1.09006 * 109.47015 * 300.00243 * 1 2 3 30 30 H 1.09010 * 109.47026 * 59.99474 * 1 2 3 31 31 H 1.08999 * 109.47633 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46536 * 239.99945 * 2 1 3 33 33 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47444 * 300.00098 * 3 2 1 35 35 H 1.09003 * 109.47371 * 60.00456 * 3 2 1 36 36 H 0.96999 * 120.00690 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.45619 * 298.56512 * 14 12 11 38 38 H 1.08996 * 109.45107 * 178.60346 * 14 12 11 39 39 H 1.09002 * 109.49423 * 301.41794 * 15 14 12 40 40 H 1.08993 * 109.50036 * 181.31776 * 15 14 12 41 41 H 1.09004 * 109.46877 * 179.29055 * 18 16 15 42 42 H 1.09000 * 109.46781 * 299.28454 * 18 16 15 43 43 H 1.08995 * 109.47665 * 59.29009 * 18 16 15 44 44 H 0.97003 * 120.00165 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58810 * 65.92309 * 28 19 16 46 46 H 1.09004 * 109.58750 * 186.35307 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7643 -0.3323 2.4583 6 7 2.2293 -0.9909 3.4439 7 16 3.0750 -2.2009 2.9199 8 6 2.8302 -1.8390 1.2013 9 6 3.3452 -2.5663 0.0299 10 8 3.0747 -2.1819 -1.0917 11 7 4.1166 -3.6583 0.2005 12 6 4.6297 -4.3819 -0.9654 13 1 4.8514 -3.6742 -1.7643 14 6 5.9061 -5.1328 -0.5795 15 6 5.6033 -6.1027 0.5650 16 6 4.5624 -7.1258 0.0997 17 1 4.9836 -7.7441 -0.6930 18 6 4.1518 -8.0116 1.2778 19 7 3.3865 -6.4065 -0.4087 20 6 2.1360 -6.6826 0.0763 21 1 1.9734 -6.7529 1.1417 22 6 1.0773 -6.8721 -0.8013 23 7 -0.1480 -6.5674 -0.4299 24 14 1.3909 -7.5666 -2.5068 25 1 1.4162 -9.0499 -2.4402 26 1 0.3086 -7.1307 -3.4254 27 1 2.6971 -7.0715 -3.0105 28 6 3.5771 -5.3896 -1.4519 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 4.3320 -3.9651 1.0951 37 1 6.6647 -4.4186 -0.2591 38 1 6.2735 -5.6907 -1.4408 39 1 5.2123 -5.5480 1.4180 40 1 6.5177 -6.6201 0.8549 41 1 3.4020 -8.7306 0.9477 42 1 5.0254 -8.5444 1.6535 43 1 3.7356 -7.3911 2.0714 44 1 -0.8877 -6.6994 -1.0433 45 1 3.9210 -5.8672 -2.3694 46 1 2.6343 -4.8746 -1.6368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071919336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:52 Heat of formation + Delta-G solvation = 46.048877 kcal Electronic energy + Delta-G solvation = -28717.544719 eV Core-core repulsion = 24963.103295 eV Total energy + Delta-G solvation = -3754.441423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97121 -39.64907 -37.80669 -35.49424 -34.34054 -32.76790 -31.60711 -30.79409 -30.39346 -27.41821 -27.07453 -26.34401 -24.92916 -23.40072 -22.46765 -21.81044 -20.62666 -20.36568 -19.09836 -17.83958 -17.43340 -16.52275 -15.88216 -15.50829 -15.39496 -15.06038 -14.60283 -14.40058 -14.13500 -13.94086 -13.70879 -13.43705 -13.08833 -13.06723 -12.89619 -12.63315 -12.33075 -12.21538 -12.10944 -11.79060 -11.49138 -11.25918 -11.19826 -11.16090 -10.99363 -10.85653 -10.70339 -10.53632 -10.31374 -10.23229 -9.98545 -9.90411 -9.71085 -9.66214 -9.62913 -9.52248 -8.75915 -8.38352 -6.63249 -6.09348 -3.52439 -0.14288 0.91714 1.57083 2.05887 3.14724 3.37168 3.37309 3.48085 3.51031 3.96275 4.53519 4.58762 4.84599 4.88160 5.08310 5.14059 5.19411 5.21846 5.25303 5.25800 5.36597 5.70517 5.73562 5.76096 5.89390 5.89744 5.95152 5.97247 6.08231 6.10363 6.20576 6.22522 6.28841 6.33441 6.36743 6.44966 6.48567 6.50648 6.81481 6.87910 6.96809 7.06914 7.63744 7.78272 8.02837 8.34687 8.42412 8.96418 9.66942 10.16899 11.05554 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004630 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.277821 B = 6045.473928 C = 6743.658706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.139 4.139 4 C 0.103 3.897 5 N -0.246 5.246 6 N -0.262 5.262 7 S 0.411 5.589 8 C -0.273 4.273 9 C 0.605 3.395 10 O -0.522 6.522 11 N -0.689 5.689 12 C 0.126 3.874 13 H 0.084 0.916 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.161 3.839 17 H 0.028 0.972 18 C -0.132 4.132 19 N -0.592 5.592 20 C -0.274 4.274 21 H 0.072 0.928 22 C 0.052 3.948 23 N -0.884 5.884 24 Si 0.854 3.146 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.260 1.260 28 C 0.131 3.869 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.263 0.737 45 H 0.037 0.963 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 8.898 2.949 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.049 4.049 3 C -0.197 4.197 4 C -0.044 4.044 5 N -0.112 5.112 6 N -0.243 5.243 7 S 0.547 5.453 8 C -0.414 4.414 9 C 0.388 3.612 10 O -0.400 6.400 11 N -0.339 5.339 12 C 0.020 3.980 13 H 0.102 0.898 14 C -0.158 4.158 15 C -0.171 4.171 16 C 0.055 3.945 17 H 0.045 0.955 18 C -0.190 4.190 19 N -0.317 5.317 20 C -0.402 4.402 21 H 0.089 0.911 22 C -0.151 4.151 23 N -0.523 5.523 24 Si 0.682 3.318 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.185 1.185 28 C 0.004 3.996 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.232 0.768 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.421 9.119 4.133 14.451 hybrid contribution -0.183 -0.579 -1.839 1.936 sum 10.237 8.540 2.295 13.528 Atomic orbital electron populations 1.21807 0.93176 1.02748 1.02292 1.20138 0.96716 0.95770 0.92316 1.21791 1.00905 0.94548 1.02453 1.22863 0.94526 0.92936 0.94094 1.70489 1.19771 1.24709 0.96226 1.78851 1.13995 1.07102 1.24334 1.82511 1.39982 1.27782 0.95008 1.27836 1.10145 1.03377 0.99992 1.16328 0.78565 0.80233 0.86094 1.90728 1.58022 1.67805 1.23397 1.45716 1.50750 1.26812 1.10640 1.21741 0.94762 0.94089 0.87399 0.89817 1.21705 0.95903 0.98252 0.99902 1.22061 0.99379 0.98171 0.97490 1.20633 0.88100 0.91210 0.94561 0.95484 1.21738 0.99732 0.99553 0.97954 1.44309 1.03098 1.39164 1.45130 1.18457 0.82645 1.46742 0.92353 0.91052 1.25727 0.94919 0.96793 0.97652 1.69983 0.99836 1.45183 1.37254 0.87222 0.78267 0.80273 0.86074 1.21511 1.22492 1.18459 1.21866 0.97474 0.89042 0.91217 0.92059 0.91595 0.92124 0.85899 0.92847 0.91592 0.92014 0.76774 0.92416 0.90708 0.92497 0.92343 0.91799 0.94425 0.92709 0.92690 0.94564 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16 2 C -0.03 -0.39 3.25 -91.77 -0.30 -0.69 16 3 C -0.14 -1.60 9.16 37.16 0.34 -1.26 16 4 C 0.10 1.62 5.53 -82.84 -0.46 1.16 16 5 N -0.25 -3.94 11.51 33.42 0.38 -3.56 16 6 N -0.26 -4.04 12.51 60.35 0.75 -3.28 16 7 S 0.41 5.51 23.05 -107.50 -2.48 3.03 16 8 C -0.27 -4.32 6.81 -35.95 -0.24 -4.57 16 9 C 0.60 10.45 7.78 -12.63 -0.10 10.35 16 10 O -0.52 -10.12 14.21 5.26 0.07 -10.05 16 11 N -0.69 -10.90 4.92 -54.62 -0.27 -11.17 16 12 C 0.13 2.01 2.81 -67.58 -0.19 1.82 16 13 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 14 C -0.12 -1.55 5.58 -26.69 -0.15 -1.70 16 15 C -0.13 -1.79 5.21 -26.61 -0.14 -1.93 16 16 C 0.16 2.80 3.49 -67.60 -0.24 2.56 16 17 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 18 C -0.13 -2.23 8.13 37.16 0.30 -1.93 16 19 N -0.59 -12.51 2.26 -164.50 -0.37 -12.89 16 20 C -0.27 -6.96 8.26 -15.06 -0.12 -7.09 16 21 H 0.07 1.97 7.06 -52.49 -0.37 1.60 16 22 C 0.05 1.43 4.99 -17.43 -0.09 1.35 16 23 N -0.88 -26.02 13.97 55.49 0.78 -25.25 16 24 Si 0.85 21.14 27.47 -169.99 -4.67 16.47 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.26 -6.09 5.08 56.52 0.29 -5.80 16 28 C 0.13 2.64 4.24 -3.48 -0.01 2.62 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 1.94 5.49 -51.93 -0.29 1.65 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 5.67 6.20 -40.82 -0.25 5.42 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.77 6.40 -51.93 -0.33 0.44 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.95 7.46 -51.93 -0.39 0.57 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.04 0.74 6.57 -51.93 -0.34 0.40 16 46 H 0.07 1.74 7.29 -51.93 -0.38 1.36 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -30.21 373.18 -8.27 -38.48 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.04 Total: 3.47 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.06 Total: -0.88 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 1.27 Total: -56.14 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -2.48 Total: 3.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.21 -8.27 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.531 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds