Wall clock time and date at job start Tue Mar 31 2020 21:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47300 * 2 1 4 4 C 1.50699 * 109.46728 * 120.00288 * 2 1 3 5 5 N 1.31237 * 124.05512 * 300.01913 * 4 2 1 6 6 N 1.27339 * 120.03698 * 179.97438 * 5 4 2 7 7 S 1.56641 * 109.74041 * 359.69007 * 6 5 4 8 8 C 1.38248 * 124.05478 * 120.00151 * 4 2 1 9 9 C 1.47176 * 128.47419 * 0.02562 * 8 4 2 10 10 O 1.21620 * 119.99913 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99540 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99776 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50123 * 34.93698 * 12 11 9 14 14 C 1.53039 * 109.50087 * 155.00360 * 12 11 9 15 15 C 1.53039 * 109.54024 * 58.58338 * 14 12 11 16 16 C 1.53193 * 109.30814 * 61.36836 * 15 14 12 17 17 H 1.08998 * 109.70321 * 65.22616 * 16 15 14 18 18 C 1.53005 * 109.58255 * 185.58130 * 16 15 14 19 19 N 1.46924 * 108.77733 * 305.36240 * 16 15 14 20 20 C 1.36939 * 120.63378 * 233.58745 * 19 16 15 21 21 H 1.08002 * 120.00003 * 47.06726 * 20 19 16 22 22 C 1.38816 * 119.99975 * 227.06902 * 20 19 16 23 23 N 1.31612 * 119.99830 * 209.39599 * 22 20 19 24 24 Si 1.86797 * 119.99902 * 29.66466 * 22 20 19 25 25 H 1.48496 * 109.46997 * 84.97027 * 24 22 20 26 26 H 1.48505 * 109.46760 * 204.96436 * 24 22 20 27 27 H 1.48497 * 109.47496 * 324.96861 * 24 22 20 28 28 C 1.46927 * 118.73626 * 53.86588 * 19 16 15 29 29 H 1.09006 * 109.47015 * 300.00243 * 1 2 3 30 30 H 1.09010 * 109.47026 * 59.99474 * 1 2 3 31 31 H 1.08999 * 109.47633 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46536 * 239.99945 * 2 1 3 33 33 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47444 * 300.00098 * 3 2 1 35 35 H 1.09003 * 109.47371 * 60.00456 * 3 2 1 36 36 H 0.96999 * 120.00690 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.45619 * 298.56512 * 14 12 11 38 38 H 1.08996 * 109.45107 * 178.60346 * 14 12 11 39 39 H 1.09002 * 109.49423 * 301.41794 * 15 14 12 40 40 H 1.08993 * 109.50036 * 181.31776 * 15 14 12 41 41 H 1.09004 * 109.46877 * 179.29055 * 18 16 15 42 42 H 1.09000 * 109.46781 * 299.28454 * 18 16 15 43 43 H 1.08995 * 109.47665 * 59.29009 * 18 16 15 44 44 H 0.97003 * 120.00165 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58810 * 65.92309 * 28 19 16 46 46 H 1.09004 * 109.58750 * 186.35307 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 7 1.7643 -0.3323 2.4583 6 7 2.2293 -0.9909 3.4439 7 16 3.0750 -2.2009 2.9199 8 6 2.8302 -1.8390 1.2013 9 6 3.3452 -2.5663 0.0299 10 8 3.0747 -2.1819 -1.0917 11 7 4.1166 -3.6583 0.2005 12 6 4.6297 -4.3819 -0.9654 13 1 4.8514 -3.6742 -1.7643 14 6 5.9061 -5.1328 -0.5795 15 6 5.6033 -6.1027 0.5650 16 6 4.5624 -7.1258 0.0997 17 1 4.9836 -7.7441 -0.6930 18 6 4.1518 -8.0116 1.2778 19 7 3.3865 -6.4065 -0.4087 20 6 2.1360 -6.6826 0.0763 21 1 1.9734 -6.7529 1.1417 22 6 1.0773 -6.8721 -0.8013 23 7 -0.1480 -6.5674 -0.4299 24 14 1.3909 -7.5666 -2.5068 25 1 1.4162 -9.0499 -2.4402 26 1 0.3086 -7.1307 -3.4254 27 1 2.6971 -7.0715 -3.0105 28 6 3.5771 -5.3896 -1.4519 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 4.3320 -3.9651 1.0951 37 1 6.6647 -4.4186 -0.2591 38 1 6.2735 -5.6907 -1.4408 39 1 5.2123 -5.5480 1.4180 40 1 6.5177 -6.6201 0.8549 41 1 3.4020 -8.7306 0.9477 42 1 5.0254 -8.5444 1.6535 43 1 3.7356 -7.3911 2.0714 44 1 -0.8877 -6.6994 -1.0433 45 1 3.9210 -5.8672 -2.3694 46 1 2.6343 -4.8746 -1.6368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071919336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:51 Heat of formation + Delta-G solvation = 26.487093 kcal Electronic energy + Delta-G solvation = -28718.392981 eV Core-core repulsion = 24963.103295 eV Total energy + Delta-G solvation = -3755.289686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18191 -40.99520 -39.22926 -36.62009 -35.82991 -34.47925 -32.90338 -32.51579 -31.64134 -28.65997 -28.08100 -27.83073 -26.56562 -24.67265 -23.96224 -22.96745 -22.04372 -21.62811 -20.59596 -19.06284 -18.70147 -18.26256 -17.16331 -17.00234 -16.84923 -16.36522 -16.03799 -15.87867 -15.38494 -15.25159 -15.15682 -14.92887 -14.43128 -14.36461 -14.10122 -14.07721 -13.86796 -13.40244 -13.37642 -13.06831 -12.95083 -12.71672 -12.56085 -12.46317 -12.26158 -12.25790 -12.12552 -11.97256 -11.76219 -11.59035 -11.47106 -11.33120 -11.12727 -10.92374 -10.91537 -10.79698 -10.54127 -10.06177 -8.42290 -8.21456 -5.57594 -1.36047 -0.26179 0.39175 0.83150 1.35580 1.41883 1.48631 1.83057 2.09455 2.47834 2.77785 3.02572 3.41394 3.45510 3.64153 3.95734 4.00391 4.07947 4.13903 4.15069 4.17468 4.38943 4.61897 4.65120 4.69891 4.76210 4.76886 4.86839 4.90020 4.91302 5.01564 5.05490 5.10519 5.13815 5.17065 5.26858 5.28397 5.31298 5.37515 5.53851 5.60142 5.69233 5.98649 6.33778 6.37487 6.56705 7.04608 7.10430 7.70098 8.22050 8.97945 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.004630 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.277821 B = 6045.473928 C = 6743.658706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.131 4.131 4 C 0.100 3.900 5 N -0.261 5.261 6 N -0.281 5.281 7 S 0.486 5.514 8 C -0.305 4.305 9 C 0.601 3.399 10 O -0.550 6.550 11 N -0.684 5.684 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.111 4.111 15 C -0.124 4.124 16 C 0.152 3.848 17 H 0.034 0.966 18 C -0.128 4.128 19 N -0.602 5.602 20 C -0.238 4.238 21 H 0.044 0.956 22 C -0.005 4.005 23 N -0.937 5.937 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.313 1.313 27 H -0.239 1.239 28 C 0.130 3.870 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.257 0.743 45 H 0.039 0.961 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.319 9.206 3.400 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.048 4.048 5 N -0.126 5.126 6 N -0.262 5.262 7 S 0.622 5.378 8 C -0.446 4.446 9 C 0.385 3.615 10 O -0.429 6.429 11 N -0.334 5.334 12 C 0.025 3.975 13 H 0.107 0.893 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.047 3.953 17 H 0.052 0.948 18 C -0.185 4.185 19 N -0.327 5.327 20 C -0.369 4.369 21 H 0.062 0.938 22 C -0.203 4.203 23 N -0.579 5.579 24 Si 0.732 3.268 25 H -0.219 1.219 26 H -0.241 1.241 27 H -0.162 1.162 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.242 0.758 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.011 9.414 4.598 17.494 hybrid contribution -1.208 -0.721 -1.864 2.336 sum 12.802 8.693 2.733 15.714 Atomic orbital electron populations 1.21781 0.92877 1.01296 1.03617 1.20190 0.96953 0.97160 0.91040 1.21743 1.00878 0.92701 1.03532 1.23151 0.94156 0.92954 0.94556 1.70541 1.20536 1.25328 0.96179 1.78650 1.14631 1.08090 1.24821 1.82146 1.37648 1.25549 0.92430 1.27853 1.11420 1.04054 1.01274 1.16549 0.78326 0.80487 0.86135 1.90709 1.58954 1.68639 1.24629 1.45700 1.50298 1.26276 1.11142 1.21666 0.94780 0.93280 0.87736 0.89321 1.21715 0.94493 0.98479 1.00216 1.21987 0.99333 0.97357 0.97625 1.20919 0.87336 0.92301 0.94713 0.94826 1.21692 1.00453 0.98889 0.97492 1.44423 1.02854 1.40235 1.45218 1.18334 0.84319 1.43158 0.91042 0.93828 1.26257 0.94886 0.98459 1.00724 1.70094 1.00719 1.48687 1.38445 0.86409 0.78484 0.79242 0.82712 1.21858 1.24142 1.16243 1.21765 0.96933 0.89611 0.91297 0.91588 0.89402 0.94875 0.87698 0.92800 0.89603 0.91788 0.75823 0.89091 0.89409 0.92339 0.88705 0.94957 0.90533 0.93838 0.93392 0.94329 0.95268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.16 71.98 0.66 -3.09 16 2 C -0.03 -0.89 3.25 -11.54 -0.04 -0.93 16 3 C -0.13 -2.88 9.16 71.98 0.66 -2.22 16 4 C 0.10 3.15 5.53 42.65 0.24 3.38 16 5 N -0.26 -8.26 11.51 -48.18 -0.55 -8.81 16 6 N -0.28 -8.39 12.51 37.02 0.46 -7.93 16 7 S 0.49 12.35 23.05 -56.49 -1.30 11.05 16 8 C -0.31 -9.61 6.81 24.62 0.17 -9.44 16 9 C 0.60 20.68 7.78 86.59 0.67 21.35 16 10 O -0.55 -21.72 14.21 -4.09 -0.06 -21.78 16 11 N -0.68 -20.61 4.92 -444.98 -2.19 -22.80 16 12 C 0.13 3.89 2.81 45.22 0.13 4.02 16 13 H 0.09 2.61 7.58 -2.39 -0.02 2.59 16 14 C -0.11 -2.35 5.58 30.62 0.17 -2.18 16 15 C -0.12 -2.79 5.21 30.67 0.16 -2.63 16 16 C 0.15 4.83 3.49 44.98 0.16 4.99 16 17 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 18 C -0.13 -4.05 8.13 71.98 0.59 -3.46 16 19 N -0.60 -24.88 2.26 -674.37 -1.52 -26.40 16 20 C -0.24 -12.36 8.26 84.03 0.69 -11.66 16 21 H 0.04 2.49 7.06 -2.91 -0.02 2.47 16 22 C -0.01 -0.29 4.99 84.86 0.42 0.13 16 23 N -0.94 -57.84 13.97 21.65 0.30 -57.54 16 24 Si 0.90 44.81 27.47 68.60 1.88 46.69 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 27 H -0.24 -10.81 5.08 99.48 0.51 -10.31 16 28 C 0.13 5.16 4.24 86.51 0.37 5.52 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 3.41 5.49 -2.39 -0.01 3.39 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.40 10.62 6.20 -92.71 -0.57 10.05 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.32 6.40 -2.39 -0.02 1.30 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.20 7.68 -2.38 -0.02 1.18 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.45 7.46 -2.39 -0.02 1.43 16 44 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.04 1.51 6.57 -2.39 -0.02 1.49 16 46 H 0.03 1.40 7.29 -2.39 -0.02 1.39 16 Total: -1.00 -69.46 373.18 2.29 -67.17 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.22 Total: 16.56 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.04 Total: 3.78 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -3.50 Total: -123.47 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.06 Total: -21.78 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 12.35 SS G_CDS: -1.30 Total: 11.05 kcal Total: -69.46 2.29 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.659 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds