Wall clock time and date at job start Tue Mar 31 2020 21:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47386 * 2 1 4 4 C 1.50703 * 109.47345 * 119.99755 * 2 1 3 5 5 N 1.31232 * 124.05728 * 300.19108 * 4 2 1 6 6 N 1.27335 * 120.03919 * 180.36663 * 5 4 2 7 7 S 1.56637 * 109.73985 * 359.68596 * 6 5 4 8 8 C 1.38250 * 124.05370 * 119.99937 * 4 2 1 9 9 C 1.47175 * 128.47525 * 359.97438 * 8 4 2 10 10 O 1.21621 * 119.99768 * 359.70188 * 9 8 4 11 11 N 1.34775 * 119.99869 * 179.70472 * 9 8 4 12 12 C 1.46501 * 119.99745 * 179.72570 * 11 9 8 13 13 H 1.09007 * 109.49923 * 35.21005 * 12 11 9 14 14 C 1.53041 * 109.49692 * 155.27250 * 12 11 9 15 15 C 1.53033 * 109.53935 * 181.31422 * 14 12 11 16 16 C 1.53190 * 109.31520 * 298.63878 * 15 14 12 17 17 H 1.09001 * 109.58492 * 294.70564 * 16 15 14 18 18 C 1.53002 * 109.58887 * 174.41875 * 16 15 14 19 19 N 1.46925 * 108.77745 * 54.63414 * 16 15 14 20 20 C 1.36932 * 120.63484 * 126.41208 * 19 16 15 21 21 H 1.07998 * 120.00163 * 330.85084 * 20 19 16 22 22 C 1.38817 * 120.00181 * 150.84970 * 20 19 16 23 23 N 1.31621 * 119.99590 * 343.81275 * 22 20 19 24 24 Si 1.86792 * 120.00004 * 163.81938 * 22 20 19 25 25 H 1.48498 * 109.47621 * 94.30798 * 24 22 20 26 26 H 1.48504 * 109.47159 * 214.30718 * 24 22 20 27 27 H 1.48503 * 109.47284 * 334.30415 * 24 22 20 28 28 C 1.46928 * 118.73538 * 306.39232 * 19 16 15 29 29 H 1.09010 * 109.47152 * 299.99924 * 1 2 3 30 30 H 1.08994 * 109.47164 * 59.99837 * 1 2 3 31 31 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47201 * 239.99824 * 2 1 3 33 33 H 1.09010 * 109.46913 * 59.99929 * 3 2 1 34 34 H 1.08999 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46973 * 300.00166 * 3 2 1 36 36 H 0.96998 * 119.99705 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.45765 * 301.34014 * 14 12 11 38 38 H 1.09004 * 109.45714 * 61.29773 * 14 12 11 39 39 H 1.09005 * 109.49701 * 58.58505 * 15 14 12 40 40 H 1.08997 * 109.49791 * 178.64952 * 15 14 12 41 41 H 1.09002 * 109.46820 * 60.00248 * 18 16 15 42 42 H 1.09004 * 109.47188 * 179.97438 * 18 16 15 43 43 H 1.08998 * 109.47210 * 300.00315 * 18 16 15 44 44 H 0.97003 * 119.99361 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.58724 * 293.81992 * 28 19 16 46 46 H 1.09006 * 109.58424 * 173.39345 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7619 -0.3340 2.4583 6 7 2.2334 -0.9880 3.4439 7 16 3.0894 -2.1906 2.9200 8 6 2.8304 -1.8389 1.2013 9 6 3.3444 -2.5669 0.0300 10 8 3.0681 -2.1866 -1.0917 11 7 4.1213 -3.6549 0.2005 12 6 4.6280 -4.3830 -0.9654 13 1 4.8452 -3.6784 -1.7682 14 6 5.9067 -5.1323 -0.5836 15 6 6.4549 -5.8668 -1.8091 16 6 5.4211 -6.8892 -2.2915 17 1 5.2890 -7.6610 -1.5331 18 6 5.9018 -7.5286 -3.5957 19 7 4.1451 -6.1985 -2.5227 20 6 3.5005 -6.3078 -3.7259 21 1 4.0685 -6.4710 -4.6299 22 6 2.1171 -6.2089 -3.7838 23 7 1.4022 -6.3303 -2.6853 24 14 1.2702 -5.9038 -5.4205 25 1 0.8626 -7.2014 -6.0165 26 1 0.0683 -5.0584 -5.2060 27 1 2.2063 -5.2089 -6.3403 28 6 3.5735 -5.3887 -1.4382 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 4.3413 -3.9584 1.0951 37 1 6.6503 -4.4214 -0.2235 38 1 5.6837 -5.8538 0.2025 39 1 6.6547 -5.1486 -2.6044 40 1 7.3784 -6.3806 -1.5424 41 1 6.8547 -8.0297 -3.4250 42 1 5.1652 -8.2560 -3.9369 43 1 6.0284 -6.7559 -4.3540 44 1 0.4355 -6.2608 -2.7257 45 1 3.2890 -6.0367 -0.6092 46 1 2.6970 -4.8540 -1.8043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071919337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:55 Heat of formation + Delta-G solvation = 44.260057 kcal Electronic energy + Delta-G solvation = -28044.301894 eV Core-core repulsion = 24289.782901 eV Total energy + Delta-G solvation = -3754.518992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13878 -39.54028 -37.70040 -35.62465 -34.55763 -32.89165 -31.64358 -30.49045 -29.88576 -27.58571 -27.16681 -26.03083 -25.05329 -23.31900 -22.33882 -21.82541 -20.63091 -20.27387 -19.30591 -17.96655 -17.35248 -16.49215 -16.01181 -15.73098 -15.37427 -15.03148 -14.40755 -14.28031 -14.17455 -13.85221 -13.76048 -13.42219 -13.17958 -13.05512 -12.84159 -12.51298 -12.39265 -12.19413 -11.95945 -11.54996 -11.30008 -11.25602 -11.18115 -10.97799 -10.94783 -10.72802 -10.61988 -10.44854 -10.38475 -10.30857 -10.01660 -9.90423 -9.86244 -9.79089 -9.56039 -9.53211 -8.74028 -8.46364 -6.66461 -5.78581 -3.22174 -0.32676 0.72192 1.38260 1.89521 3.07520 3.19338 3.39731 3.47687 3.49438 3.79918 4.44036 4.50130 4.72557 4.98071 5.10084 5.11297 5.25288 5.30474 5.41796 5.50735 5.58954 5.63251 5.66387 5.80869 5.85987 5.88946 6.02030 6.03239 6.20271 6.21227 6.22306 6.32612 6.33795 6.39977 6.41923 6.56703 6.63499 6.75560 6.99128 7.07730 7.21553 7.52919 7.64216 7.65956 7.83376 8.26613 8.45641 9.20011 9.84458 10.39361 11.29782 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.003920 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.493372 B = 7140.798202 C = 8643.030097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.140 4.140 4 C 0.104 3.896 5 N -0.244 5.244 6 N -0.259 5.259 7 S 0.399 5.601 8 C -0.274 4.274 9 C 0.597 3.403 10 O -0.502 6.502 11 N -0.708 5.708 12 C 0.116 3.884 13 H 0.088 0.912 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.137 4.137 19 N -0.582 5.582 20 C -0.254 4.254 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.167 3.833 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.253 0.747 45 H 0.018 0.982 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 8.327 9.906 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.042 4.042 5 N -0.110 5.110 6 N -0.240 5.240 7 S 0.536 5.464 8 C -0.416 4.416 9 C 0.379 3.621 10 O -0.378 6.378 11 N -0.359 5.359 12 C 0.012 3.988 13 H 0.106 0.894 14 C -0.156 4.156 15 C -0.166 4.166 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.194 4.194 19 N -0.305 5.305 20 C -0.383 4.383 21 H 0.089 0.911 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.203 1.203 28 C 0.040 3.960 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.225 0.775 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.010 8.562 11.074 15.233 hybrid contribution -0.634 0.133 -1.469 1.606 sum 5.376 8.695 9.605 14.027 Atomic orbital electron populations 1.21799 0.93158 1.02514 1.02463 1.20187 0.96737 0.95997 0.92274 1.21796 1.01040 0.94371 1.02551 1.22929 0.94510 0.92716 0.94089 1.70508 1.19837 1.24373 0.96250 1.78896 1.13520 1.07262 1.24295 1.82464 1.40180 1.28735 0.95060 1.27975 1.09883 1.03786 0.99908 1.16409 0.79129 0.80408 0.86148 1.90816 1.57103 1.66712 1.23156 1.46008 1.51243 1.27965 1.10650 1.22157 0.95617 0.94925 0.86123 0.89431 1.21694 0.96135 0.98813 0.98916 1.22046 0.98410 0.99249 0.96849 1.20497 0.86703 0.91818 0.95182 0.95693 1.21803 0.98984 1.00587 0.98042 1.44011 1.21227 1.52359 1.12930 1.19136 0.88592 1.45388 0.85219 0.91142 1.25064 0.96715 1.00636 0.96756 1.70007 1.05173 1.52526 1.26649 0.86334 0.79282 0.77774 0.83707 1.21534 1.21537 1.20315 1.21092 0.94246 0.90485 0.90187 0.92043 0.91400 0.92377 0.85699 0.92019 0.92736 0.91409 0.77543 0.92890 0.92096 0.91965 0.92528 0.94324 0.91999 0.92733 0.93712 0.96348 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 2 C -0.03 -0.40 3.25 -91.77 -0.30 -0.70 16 3 C -0.14 -1.55 9.16 37.16 0.34 -1.21 16 4 C 0.10 1.49 5.53 -82.84 -0.46 1.03 16 5 N -0.24 -3.49 11.51 33.42 0.38 -3.10 16 6 N -0.26 -3.47 12.51 60.35 0.75 -2.72 16 7 S 0.40 4.38 23.05 -107.50 -2.48 1.91 16 8 C -0.27 -3.88 6.81 -35.95 -0.24 -4.12 16 9 C 0.60 9.89 7.77 -12.63 -0.10 9.79 16 10 O -0.50 -10.10 14.21 5.26 0.07 -10.02 16 11 N -0.71 -10.71 5.08 -54.84 -0.28 -10.98 16 12 C 0.12 2.09 2.60 -67.81 -0.18 1.91 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 C -0.12 -1.73 5.35 -26.69 -0.14 -1.88 16 15 C -0.13 -1.99 5.37 -26.62 -0.14 -2.13 16 16 C 0.16 3.20 3.50 -67.60 -0.24 2.96 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.45 7.94 37.16 0.30 -2.16 16 19 N -0.58 -13.84 2.99 -164.77 -0.49 -14.33 16 20 C -0.25 -6.71 8.60 -15.06 -0.13 -6.84 16 21 H 0.07 1.82 6.21 -52.49 -0.33 1.49 16 22 C 0.01 0.20 4.93 -17.43 -0.09 0.12 16 23 N -0.90 -25.89 11.22 55.49 0.62 -25.27 16 24 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.17 3.82 4.86 -3.71 -0.02 3.80 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 1.94 5.49 -51.93 -0.29 1.65 16 33 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 4.61 8.03 -40.82 -0.33 4.29 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 43 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 2.58 6.11 -51.93 -0.32 2.26 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -30.79 378.95 -8.85 -39.64 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.06 Total: 3.22 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.06 Total: -0.83 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.99 Total: -56.41 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.48 Total: 1.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.79 -8.85 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.898 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds