Wall clock time and date at job start Tue Mar 31 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47386 * 2 1 4 4 C 1.50703 * 109.47345 * 119.99755 * 2 1 3 5 5 N 1.31232 * 124.05728 * 300.19108 * 4 2 1 6 6 N 1.27335 * 120.03919 * 180.36663 * 5 4 2 7 7 S 1.56637 * 109.73985 * 359.68596 * 6 5 4 8 8 C 1.38250 * 124.05370 * 119.99937 * 4 2 1 9 9 C 1.47175 * 128.47525 * 359.97438 * 8 4 2 10 10 O 1.21621 * 119.99768 * 359.70188 * 9 8 4 11 11 N 1.34775 * 119.99869 * 179.70472 * 9 8 4 12 12 C 1.46501 * 119.99745 * 179.72570 * 11 9 8 13 13 H 1.09007 * 109.49923 * 35.21005 * 12 11 9 14 14 C 1.53041 * 109.49692 * 155.27250 * 12 11 9 15 15 C 1.53033 * 109.53935 * 181.31422 * 14 12 11 16 16 C 1.53190 * 109.31520 * 298.63878 * 15 14 12 17 17 H 1.09001 * 109.58492 * 294.70564 * 16 15 14 18 18 C 1.53002 * 109.58887 * 174.41875 * 16 15 14 19 19 N 1.46925 * 108.77745 * 54.63414 * 16 15 14 20 20 C 1.36932 * 120.63484 * 126.41208 * 19 16 15 21 21 H 1.07998 * 120.00163 * 330.85084 * 20 19 16 22 22 C 1.38817 * 120.00181 * 150.84970 * 20 19 16 23 23 N 1.31621 * 119.99590 * 343.81275 * 22 20 19 24 24 Si 1.86792 * 120.00004 * 163.81938 * 22 20 19 25 25 H 1.48498 * 109.47621 * 94.30798 * 24 22 20 26 26 H 1.48504 * 109.47159 * 214.30718 * 24 22 20 27 27 H 1.48503 * 109.47284 * 334.30415 * 24 22 20 28 28 C 1.46928 * 118.73538 * 306.39232 * 19 16 15 29 29 H 1.09010 * 109.47152 * 299.99924 * 1 2 3 30 30 H 1.08994 * 109.47164 * 59.99837 * 1 2 3 31 31 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47201 * 239.99824 * 2 1 3 33 33 H 1.09010 * 109.46913 * 59.99929 * 3 2 1 34 34 H 1.08999 * 109.47261 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46973 * 300.00166 * 3 2 1 36 36 H 0.96998 * 119.99705 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.45765 * 301.34014 * 14 12 11 38 38 H 1.09004 * 109.45714 * 61.29773 * 14 12 11 39 39 H 1.09005 * 109.49701 * 58.58505 * 15 14 12 40 40 H 1.08997 * 109.49791 * 178.64952 * 15 14 12 41 41 H 1.09002 * 109.46820 * 60.00248 * 18 16 15 42 42 H 1.09004 * 109.47188 * 179.97438 * 18 16 15 43 43 H 1.08998 * 109.47210 * 300.00315 * 18 16 15 44 44 H 0.97003 * 119.99361 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.58724 * 293.81992 * 28 19 16 46 46 H 1.09006 * 109.58424 * 173.39345 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7619 -0.3340 2.4583 6 7 2.2334 -0.9880 3.4439 7 16 3.0894 -2.1906 2.9200 8 6 2.8304 -1.8389 1.2013 9 6 3.3444 -2.5669 0.0300 10 8 3.0681 -2.1866 -1.0917 11 7 4.1213 -3.6549 0.2005 12 6 4.6280 -4.3830 -0.9654 13 1 4.8452 -3.6784 -1.7682 14 6 5.9067 -5.1323 -0.5836 15 6 6.4549 -5.8668 -1.8091 16 6 5.4211 -6.8892 -2.2915 17 1 5.2890 -7.6610 -1.5331 18 6 5.9018 -7.5286 -3.5957 19 7 4.1451 -6.1985 -2.5227 20 6 3.5005 -6.3078 -3.7259 21 1 4.0685 -6.4710 -4.6299 22 6 2.1171 -6.2089 -3.7838 23 7 1.4022 -6.3303 -2.6853 24 14 1.2702 -5.9038 -5.4205 25 1 0.8626 -7.2014 -6.0165 26 1 0.0683 -5.0584 -5.2060 27 1 2.2063 -5.2089 -6.3403 28 6 3.5735 -5.3887 -1.4382 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 4.3413 -3.9584 1.0951 37 1 6.6503 -4.4214 -0.2235 38 1 5.6837 -5.8538 0.2025 39 1 6.6547 -5.1486 -2.6044 40 1 7.3784 -6.3806 -1.5424 41 1 6.8547 -8.0297 -3.4250 42 1 5.1652 -8.2560 -3.9369 43 1 6.0284 -6.7559 -4.3540 44 1 0.4355 -6.2608 -2.7257 45 1 3.2890 -6.0367 -0.6092 46 1 2.6970 -4.8540 -1.8043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071919337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:54 Heat of formation + Delta-G solvation = 24.091286 kcal Electronic energy + Delta-G solvation = -28045.176477 eV Core-core repulsion = 24289.782901 eV Total energy + Delta-G solvation = -3755.393576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22517 -40.90807 -39.22716 -36.68553 -36.03524 -34.66518 -32.92425 -31.86383 -31.58073 -28.74272 -28.10859 -27.64798 -26.71895 -24.56461 -23.90029 -22.94584 -22.05684 -21.60755 -20.84059 -19.02967 -18.58844 -18.30826 -17.27104 -17.11453 -16.86399 -16.24094 -15.92308 -15.76066 -15.47522 -15.26450 -15.16990 -14.97329 -14.48508 -14.16521 -14.13085 -14.06052 -13.54736 -13.42129 -13.09092 -13.08389 -12.78220 -12.68666 -12.54197 -12.29542 -12.28450 -12.23987 -12.12469 -12.04715 -11.94409 -11.63748 -11.49475 -11.35403 -11.14902 -10.96234 -10.91767 -10.82331 -10.51800 -10.19933 -8.60750 -7.84497 -5.29043 -1.40552 -0.31465 0.36148 0.78960 1.42249 1.46513 1.53945 1.78798 1.93572 2.51901 2.72830 3.32100 3.36575 3.54144 3.75645 3.92021 3.98749 4.10922 4.11451 4.12129 4.26388 4.40264 4.59798 4.64269 4.73329 4.74520 4.80707 4.87205 4.88226 4.90336 5.03102 5.08618 5.10068 5.18801 5.25201 5.26279 5.33239 5.36410 5.41766 5.56823 5.63378 5.73065 5.79885 6.31181 6.44665 6.53818 7.01760 7.18580 7.91998 8.40641 9.20779 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.003920 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.493372 B = 7140.798202 C = 8643.030097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C -0.132 4.132 4 C 0.104 3.896 5 N -0.260 5.260 6 N -0.279 5.279 7 S 0.506 5.494 8 C -0.310 4.310 9 C 0.597 3.403 10 O -0.546 6.546 11 N -0.697 5.697 12 C 0.132 3.868 13 H 0.062 0.938 14 C -0.110 4.110 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.022 0.978 18 C -0.130 4.130 19 N -0.602 5.602 20 C -0.249 4.249 21 H 0.074 0.926 22 C -0.050 4.050 23 N -0.932 5.932 24 Si 0.952 3.048 25 H -0.283 1.283 26 H -0.300 1.300 27 H -0.270 1.270 28 C 0.177 3.823 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.410 0.590 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.244 0.756 45 H 0.000 1.000 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 8.529 11.471 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.057 4.057 3 C -0.190 4.190 4 C -0.044 4.044 5 N -0.125 5.125 6 N -0.260 5.260 7 S 0.642 5.358 8 C -0.451 4.451 9 C 0.381 3.619 10 O -0.424 6.424 11 N -0.349 5.349 12 C 0.027 3.973 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.157 4.157 16 C 0.048 3.952 17 H 0.040 0.960 18 C -0.188 4.188 19 N -0.326 5.326 20 C -0.379 4.379 21 H 0.092 0.908 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.781 3.219 25 H -0.210 1.210 26 H -0.227 1.227 27 H -0.195 1.195 28 C 0.050 3.950 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.562 8.752 12.675 17.622 hybrid contribution -1.339 -0.019 -1.860 2.292 sum 7.223 8.733 10.815 15.665 Atomic orbital electron populations 1.21772 0.92510 1.01600 1.03598 1.20183 0.97316 0.97070 0.91163 1.21752 1.00799 0.92907 1.03556 1.23081 0.94179 0.92701 0.94481 1.70585 1.20797 1.25079 0.96010 1.78639 1.14177 1.08415 1.24759 1.82023 1.36913 1.25678 0.91184 1.27757 1.11437 1.04465 1.01420 1.16697 0.78455 0.80416 0.86325 1.90798 1.58468 1.67924 1.25249 1.45777 1.50801 1.27343 1.10939 1.21676 0.95648 0.93387 0.86631 0.91928 1.21687 0.94727 0.99427 0.98945 1.21946 0.98538 0.98255 0.96941 1.20812 0.85648 0.92723 0.96039 0.95999 1.21741 1.00165 0.99859 0.97012 1.44304 1.22536 1.53509 1.12246 1.19459 0.88764 1.43050 0.86662 0.90797 1.25723 0.97626 1.01940 0.99250 1.70157 1.04568 1.54897 1.28259 0.85482 0.77993 0.77513 0.80895 1.20987 1.22714 1.19454 1.20794 0.94319 0.90681 0.89224 0.91195 0.89930 0.94267 0.88257 0.91414 0.93028 0.89935 0.75300 0.89218 0.90575 0.92729 0.88544 0.90346 0.94467 0.93510 0.94713 0.98197 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.16 71.98 0.66 -2.76 16 2 C -0.04 -0.97 3.25 -11.54 -0.04 -1.00 16 3 C -0.13 -2.89 9.16 71.98 0.66 -2.23 16 4 C 0.10 2.95 5.53 42.65 0.24 3.18 16 5 N -0.26 -7.19 11.51 -48.18 -0.55 -7.75 16 6 N -0.28 -6.95 12.51 37.02 0.46 -6.49 16 7 S 0.51 9.89 23.05 -56.49 -1.30 8.59 16 8 C -0.31 -8.63 6.81 24.62 0.17 -8.47 16 9 C 0.60 20.12 7.77 86.59 0.67 20.79 16 10 O -0.55 -23.17 14.21 -4.10 -0.06 -23.23 16 11 N -0.70 -20.58 5.08 -445.67 -2.26 -22.84 16 12 C 0.13 4.69 2.60 45.07 0.12 4.81 16 13 H 0.06 2.57 7.58 -2.38 -0.02 2.55 16 14 C -0.11 -2.88 5.35 30.62 0.16 -2.72 16 15 C -0.12 -3.32 5.37 30.67 0.16 -3.16 16 16 C 0.15 5.72 3.50 44.98 0.16 5.88 16 17 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 18 C -0.13 -4.47 7.94 71.98 0.57 -3.90 16 19 N -0.60 -29.08 2.99 -675.22 -2.02 -31.10 16 20 C -0.25 -13.49 8.60 84.04 0.72 -12.77 16 21 H 0.07 3.87 6.21 -2.91 -0.02 3.85 16 22 C -0.05 -2.86 4.93 84.86 0.42 -2.44 16 23 N -0.93 -56.36 11.22 21.65 0.24 -56.11 16 24 Si 0.95 46.44 29.58 68.60 2.03 48.47 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 27 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 28 C 0.18 8.36 4.86 86.36 0.42 8.78 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 3.28 5.49 -2.39 -0.01 3.27 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 8.74 8.03 -92.71 -0.74 7.99 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.43 7.66 -2.39 -0.02 1.41 16 43 H 0.05 1.65 7.40 -2.39 -0.02 1.63 16 44 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.05 2.61 6.11 -2.38 -0.01 2.59 16 Total: -1.00 -71.77 378.95 1.89 -69.88 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.25 Total: 16.59 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.09 Total: 4.00 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -4.13 Total: -124.29 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 9.89 SS G_CDS: -1.30 Total: 8.59 kcal Total: -71.77 1.89 -69.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.974 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds