Wall clock time and date at job start Tue Mar 31 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46982 * 2 1 4 4 C 1.50701 * 109.47286 * 120.00155 * 2 1 3 5 5 N 1.31238 * 124.05744 * 300.18707 * 4 2 1 6 6 N 1.27329 * 120.03638 * 180.36763 * 5 4 2 7 7 S 1.56638 * 109.74298 * 359.69183 * 6 5 4 8 8 C 1.38244 * 124.05047 * 120.00210 * 4 2 1 9 9 C 1.47171 * 128.48257 * 359.97438 * 8 4 2 10 10 O 1.21623 * 119.99808 * 359.69989 * 9 8 4 11 11 N 1.34771 * 120.00312 * 179.70520 * 9 8 4 12 12 C 1.46497 * 119.99896 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.52667 * 325.08007 * 12 11 9 14 14 C 1.53044 * 109.49704 * 204.99787 * 12 11 9 15 15 C 1.53041 * 109.53884 * 301.41588 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63377 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 H 1.09004 * 109.47060 * 59.99825 * 1 2 3 30 30 H 1.08993 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47007 * 299.99929 * 1 2 3 32 32 H 1.09009 * 109.47265 * 240.00823 * 2 1 3 33 33 H 1.09001 * 109.47021 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47424 * 299.99932 * 3 2 1 35 35 H 1.09002 * 109.47010 * 60.00680 * 3 2 1 36 36 H 0.96997 * 119.99819 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.46216 * 181.39811 * 14 12 11 38 38 H 1.09001 * 109.45852 * 61.43589 * 14 12 11 39 39 H 1.09000 * 109.49323 * 178.67827 * 15 14 12 40 40 H 1.08997 * 109.49680 * 58.58704 * 15 14 12 41 41 H 1.09000 * 109.47021 * 60.28316 * 18 16 15 42 42 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 43 43 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 44 44 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 46 46 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7619 -0.3341 2.4583 6 7 2.2334 -0.9882 3.4438 7 16 3.0895 -2.1907 2.9198 8 6 2.8303 -1.8389 1.2011 9 6 3.3445 -2.5668 0.0299 10 8 3.0682 -2.1865 -1.0918 11 7 4.1213 -3.6548 0.2002 12 6 4.6326 -4.3796 -0.9657 13 1 3.8901 -4.3567 -1.7633 14 6 4.9214 -5.8317 -0.5781 15 6 5.9395 -5.8639 0.5641 16 6 7.2477 -5.2194 0.0950 17 1 7.6883 -5.8229 -0.6985 18 6 8.2233 -5.1254 1.2700 19 7 6.9552 -3.8729 -0.4148 20 6 7.6286 -2.7825 0.0677 21 1 7.9946 -2.7800 1.0838 22 6 7.8410 -1.6805 -0.7492 23 7 7.6784 -1.7852 -2.0511 24 14 8.3575 -0.0488 -0.0007 25 1 9.6475 -0.2187 0.7150 26 1 8.5176 0.9612 -1.0776 27 1 7.3174 0.4085 0.9555 28 6 5.9261 -3.7184 -1.4520 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 4.3419 -3.9579 1.0948 37 1 5.3251 -6.3641 -1.4394 38 1 3.9978 -6.3119 -0.2549 39 1 6.1269 -6.8974 0.8553 40 1 5.5467 -5.3106 1.4171 41 1 8.4326 -6.1256 1.6493 42 1 9.1514 -4.6620 0.9354 43 1 7.7807 -4.5216 2.0622 44 1 7.8272 -1.0152 -2.6220 45 1 6.2590 -4.1994 -2.3718 46 1 5.7474 -2.6592 -1.6377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071919338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:58 Heat of formation + Delta-G solvation = 45.299267 kcal Electronic energy + Delta-G solvation = -28839.918140 eV Core-core repulsion = 25085.444211 eV Total energy + Delta-G solvation = -3754.473929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.98792 -39.53958 -37.66956 -35.50329 -34.25704 -32.82899 -31.58237 -30.40930 -29.93890 -27.40577 -27.09715 -26.21540 -25.04608 -23.36327 -22.25663 -21.80748 -20.60679 -20.32547 -18.92744 -17.83308 -17.37489 -16.38263 -15.88559 -15.49391 -15.34174 -14.92277 -14.43656 -14.21617 -14.11281 -13.96970 -13.67141 -13.28785 -13.10005 -12.95362 -12.88492 -12.59441 -12.24865 -12.13012 -12.02484 -11.34921 -11.23852 -11.21990 -11.17610 -11.04067 -10.96134 -10.84149 -10.75891 -10.45399 -10.41161 -10.24319 -10.02689 -9.74735 -9.67764 -9.63938 -9.56346 -9.50627 -8.58277 -8.50590 -6.65940 -5.81140 -3.25299 -0.16296 0.89337 1.54550 2.03989 3.22102 3.33737 3.40497 3.42047 3.43603 3.94403 4.44935 4.57659 4.89542 5.09621 5.18118 5.20723 5.23313 5.27903 5.35110 5.42473 5.51559 5.69199 5.74447 5.87679 5.91848 5.94012 6.01963 6.07046 6.08493 6.25110 6.28587 6.29772 6.35099 6.40661 6.44099 6.52131 6.57937 6.75420 6.98663 7.04676 7.26076 7.57245 7.68997 7.77972 7.83577 8.41948 8.44791 9.17696 9.81795 10.37967 11.26943 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.005096 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.093523 B = 5492.867691 C = 6297.255585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.142 4.142 4 C 0.100 3.900 5 N -0.246 5.246 6 N -0.264 5.264 7 S 0.404 5.596 8 C -0.270 4.270 9 C 0.600 3.400 10 O -0.518 6.518 11 N -0.687 5.687 12 C 0.118 3.882 13 H 0.081 0.919 14 C -0.119 4.119 15 C -0.132 4.132 16 C 0.165 3.835 17 H 0.026 0.974 18 C -0.136 4.136 19 N -0.582 5.582 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.009 3.991 23 N -0.897 5.897 24 Si 0.893 3.107 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.286 1.286 28 C 0.161 3.839 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.255 0.745 45 H 0.029 0.971 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 -4.696 5.978 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 C -0.200 4.200 4 C -0.047 4.047 5 N -0.111 5.111 6 N -0.244 5.244 7 S 0.541 5.459 8 C -0.411 4.411 9 C 0.382 3.618 10 O -0.396 6.396 11 N -0.337 5.337 12 C 0.013 3.987 13 H 0.099 0.901 14 C -0.157 4.157 15 C -0.172 4.172 16 C 0.058 3.942 17 H 0.044 0.956 18 C -0.194 4.194 19 N -0.305 5.305 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.190 4.190 23 N -0.540 5.540 24 Si 0.723 3.277 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.213 1.213 28 C 0.035 3.965 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.719 -4.331 7.033 13.532 hybrid contribution 0.420 1.010 -0.502 1.204 sum -10.299 -3.321 6.531 12.639 Atomic orbital electron populations 1.21785 0.93467 1.01978 1.02433 1.20150 0.96279 0.96190 0.92381 1.21803 1.01604 0.94241 1.02342 1.22877 0.95129 0.92614 0.94085 1.70486 1.20183 1.24224 0.96249 1.78851 1.13652 1.07562 1.24319 1.82515 1.39644 1.28568 0.95204 1.27941 1.09053 1.04085 0.99984 1.16334 0.78984 0.80412 0.86025 1.90744 1.59510 1.66089 1.23240 1.45767 1.49273 1.27983 1.10728 1.21924 0.98900 0.90960 0.86939 0.90059 1.21708 0.98691 0.95544 0.99802 1.22090 0.97893 0.99737 0.97444 1.20467 0.91551 0.87930 0.94217 0.95628 1.21794 1.00265 0.99168 0.98128 1.44032 1.40477 1.00763 1.45275 1.19021 1.31302 0.93164 0.94837 0.91491 1.25046 0.99751 0.99315 0.94900 1.69965 1.52372 1.29534 1.02139 0.86532 0.78551 0.84382 0.78276 1.20842 1.21521 1.21287 1.21187 0.83843 1.01809 0.89698 0.91564 0.92781 0.92049 0.85755 0.92391 0.91492 0.92081 0.77058 0.90735 0.92857 0.92603 0.92816 0.94357 0.92008 0.92968 0.93527 0.95276 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.16 37.15 0.34 -1.28 16 2 C -0.03 -0.40 3.25 -91.77 -0.30 -0.70 16 3 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16 4 C 0.10 1.58 5.53 -82.84 -0.46 1.12 16 5 N -0.25 -3.92 11.51 33.42 0.38 -3.53 16 6 N -0.26 -4.03 12.51 60.35 0.75 -3.28 16 7 S 0.40 5.41 23.05 -107.50 -2.48 2.93 16 8 C -0.27 -4.33 6.81 -35.95 -0.24 -4.58 16 9 C 0.60 10.72 7.77 -12.64 -0.10 10.63 16 10 O -0.52 -10.51 14.21 5.26 0.07 -10.44 16 11 N -0.69 -11.43 4.91 -54.85 -0.27 -11.70 16 12 C 0.12 2.05 2.81 -67.81 -0.19 1.86 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.12 -1.70 5.59 -26.69 -0.15 -1.85 16 15 C -0.13 -1.92 5.21 -26.61 -0.14 -2.06 16 16 C 0.16 3.03 3.49 -67.60 -0.24 2.80 16 17 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.32 7.96 37.16 0.30 -2.02 16 19 N -0.58 -13.03 2.90 -164.77 -0.48 -13.51 16 20 C -0.25 -6.40 8.58 -15.06 -0.13 -6.53 16 21 H 0.07 1.66 6.24 -52.49 -0.33 1.33 16 22 C 0.01 0.25 4.94 -17.43 -0.09 0.17 16 23 N -0.90 -25.40 11.23 55.49 0.62 -24.77 16 24 Si 0.89 21.61 29.58 -169.99 -5.03 16.58 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.16 3.59 4.88 -3.71 -0.02 3.57 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.12 2.01 5.49 -51.92 -0.29 1.72 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.39 5.86 6.20 -40.82 -0.25 5.61 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.17 7.66 -51.93 -0.40 0.78 16 43 H 0.05 0.89 7.42 -51.93 -0.39 0.50 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 2.54 6.15 -51.93 -0.32 2.22 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -29.53 375.51 -8.73 -38.26 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.90 Total: 4.25 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.07 Total: -0.45 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 1.01 Total: -56.79 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -2.48 Total: 2.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.53 -8.73 -38.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.559 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds