Wall clock time and date at job start Tue Mar 31 2020 21:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46982 * 2 1 4 4 C 1.50701 * 109.47286 * 120.00155 * 2 1 3 5 5 N 1.31238 * 124.05744 * 300.18707 * 4 2 1 6 6 N 1.27329 * 120.03638 * 180.36763 * 5 4 2 7 7 S 1.56638 * 109.74298 * 359.69183 * 6 5 4 8 8 C 1.38244 * 124.05047 * 120.00210 * 4 2 1 9 9 C 1.47171 * 128.48257 * 359.97438 * 8 4 2 10 10 O 1.21623 * 119.99808 * 359.69989 * 9 8 4 11 11 N 1.34771 * 120.00312 * 179.70520 * 9 8 4 12 12 C 1.46497 * 119.99896 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.52667 * 325.08007 * 12 11 9 14 14 C 1.53044 * 109.49704 * 204.99787 * 12 11 9 15 15 C 1.53041 * 109.53884 * 301.41588 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63377 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 H 1.09004 * 109.47060 * 59.99825 * 1 2 3 30 30 H 1.08993 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47007 * 299.99929 * 1 2 3 32 32 H 1.09009 * 109.47265 * 240.00823 * 2 1 3 33 33 H 1.09001 * 109.47021 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47424 * 299.99932 * 3 2 1 35 35 H 1.09002 * 109.47010 * 60.00680 * 3 2 1 36 36 H 0.96997 * 119.99819 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.46216 * 181.39811 * 14 12 11 38 38 H 1.09001 * 109.45852 * 61.43589 * 14 12 11 39 39 H 1.09000 * 109.49323 * 178.67827 * 15 14 12 40 40 H 1.08997 * 109.49680 * 58.58704 * 15 14 12 41 41 H 1.09000 * 109.47021 * 60.28316 * 18 16 15 42 42 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 43 43 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 44 44 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 46 46 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7619 -0.3341 2.4583 6 7 2.2334 -0.9882 3.4438 7 16 3.0895 -2.1907 2.9198 8 6 2.8303 -1.8389 1.2011 9 6 3.3445 -2.5668 0.0299 10 8 3.0682 -2.1865 -1.0918 11 7 4.1213 -3.6548 0.2002 12 6 4.6326 -4.3796 -0.9657 13 1 3.8901 -4.3567 -1.7633 14 6 4.9214 -5.8317 -0.5781 15 6 5.9395 -5.8639 0.5641 16 6 7.2477 -5.2194 0.0950 17 1 7.6883 -5.8229 -0.6985 18 6 8.2233 -5.1254 1.2700 19 7 6.9552 -3.8729 -0.4148 20 6 7.6286 -2.7825 0.0677 21 1 7.9946 -2.7800 1.0838 22 6 7.8410 -1.6805 -0.7492 23 7 7.6784 -1.7852 -2.0511 24 14 8.3575 -0.0488 -0.0007 25 1 9.6475 -0.2187 0.7150 26 1 8.5176 0.9612 -1.0776 27 1 7.3174 0.4085 0.9555 28 6 5.9261 -3.7184 -1.4520 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 4.3419 -3.9579 1.0948 37 1 5.3251 -6.3641 -1.4394 38 1 3.9978 -6.3119 -0.2549 39 1 6.1269 -6.8974 0.8553 40 1 5.5467 -5.3106 1.4171 41 1 8.4326 -6.1256 1.6493 42 1 9.1514 -4.6620 0.9354 43 1 7.7807 -4.5216 2.0622 44 1 7.8272 -1.0152 -2.6220 45 1 6.2590 -4.1994 -2.3718 46 1 5.7474 -2.6592 -1.6377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071919338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:57 Heat of formation + Delta-G solvation = 26.818649 kcal Electronic energy + Delta-G solvation = -28840.719519 eV Core-core repulsion = 25085.444211 eV Total energy + Delta-G solvation = -3755.275309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19899 -40.95455 -39.15663 -36.63279 -35.80914 -34.52415 -32.91563 -31.80405 -31.57917 -28.65531 -28.10426 -27.76799 -26.72778 -24.62726 -23.84416 -22.98413 -22.08422 -21.62169 -20.45505 -19.06305 -18.64974 -18.14565 -17.15694 -17.06883 -16.75923 -16.20041 -15.93079 -15.80844 -15.51540 -15.25356 -15.14343 -14.74533 -14.43425 -14.12414 -14.10151 -14.03101 -13.67937 -13.41083 -13.08779 -12.98773 -12.88288 -12.62025 -12.57179 -12.41796 -12.28372 -12.24012 -12.14639 -12.08043 -11.97029 -11.56095 -11.47195 -11.19703 -11.04931 -10.93557 -10.91592 -10.81422 -10.51572 -10.05617 -8.54858 -7.82225 -5.26321 -1.37788 -0.28462 0.37566 0.81370 1.38162 1.41069 1.45309 1.84927 2.10059 2.48624 2.75551 3.33742 3.39801 3.64221 3.66945 3.95112 4.04643 4.12094 4.12579 4.12837 4.21335 4.50744 4.62514 4.67877 4.74799 4.76498 4.83012 4.87421 4.89403 4.98615 5.05435 5.07398 5.10502 5.15962 5.25935 5.29469 5.34608 5.36720 5.58532 5.61098 5.65807 5.75177 5.76807 6.39927 6.45745 6.55687 7.08715 7.20521 7.94836 8.45000 9.22779 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.005096 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.093523 B = 5492.867691 C = 6297.255585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 C -0.138 4.138 4 C 0.099 3.901 5 N -0.260 5.260 6 N -0.280 5.280 7 S 0.489 5.511 8 C -0.305 4.305 9 C 0.598 3.402 10 O -0.551 6.551 11 N -0.680 5.680 12 C 0.128 3.872 13 H 0.078 0.922 14 C -0.112 4.112 15 C -0.122 4.122 16 C 0.154 3.846 17 H 0.015 0.985 18 C -0.130 4.130 19 N -0.594 5.594 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.048 4.048 23 N -0.932 5.932 24 Si 0.939 3.061 25 H -0.271 1.271 26 H -0.302 1.302 27 H -0.288 1.288 28 C 0.170 3.830 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.032 0.968 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.405 0.595 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.052 0.948 44 H 0.243 0.757 45 H 0.002 0.998 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -6.610 8.594 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.049 4.049 5 N -0.124 5.124 6 N -0.261 5.261 7 S 0.625 5.375 8 C -0.446 4.446 9 C 0.381 3.619 10 O -0.430 6.430 11 N -0.331 5.331 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.150 4.150 15 C -0.161 4.161 16 C 0.049 3.951 17 H 0.033 0.967 18 C -0.187 4.187 19 N -0.318 5.318 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.243 4.243 23 N -0.578 5.578 24 Si 0.769 3.231 25 H -0.197 1.197 26 H -0.229 1.229 27 H -0.215 1.215 28 C 0.043 3.957 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.766 -6.283 9.708 16.497 hybrid contribution 0.802 1.509 -1.254 2.120 sum -10.964 -4.774 8.454 14.645 Atomic orbital electron populations 1.21737 0.91258 1.02286 1.03552 1.20193 0.98116 0.96115 0.91092 1.21782 0.99935 0.94143 1.03695 1.23132 0.94673 0.92516 0.94568 1.70550 1.21043 1.24752 0.96093 1.78642 1.14178 1.08489 1.24764 1.82119 1.37030 1.26181 0.92120 1.27853 1.10463 1.04946 1.01334 1.16592 0.78706 0.80380 0.86183 1.90729 1.60625 1.66873 1.24811 1.45660 1.48795 1.27654 1.10980 1.21654 0.95906 0.92781 0.87403 0.90445 1.21699 1.00377 0.92810 1.00080 1.21994 0.95196 1.01475 0.97472 1.20770 0.94354 0.85647 0.94364 0.96720 1.21736 0.98412 1.01195 0.97396 1.44248 1.40483 1.02059 1.45025 1.19338 1.28903 0.93590 0.94784 0.90719 1.25627 1.01572 1.01920 0.95212 1.70123 1.55227 1.29320 1.03174 0.85770 0.78520 0.81679 0.77143 1.19706 1.22898 1.21515 1.20879 0.86390 0.99174 0.89280 0.89687 0.92878 0.91626 0.87904 0.94880 0.89466 0.91388 0.75826 0.90395 0.89277 0.88948 0.91871 0.90627 0.94824 0.92871 0.94792 0.97973 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.16 71.98 0.66 -2.26 16 2 C -0.03 -0.95 3.25 -11.54 -0.04 -0.99 16 3 C -0.14 -3.71 9.16 71.98 0.66 -3.05 16 4 C 0.10 3.10 5.53 42.65 0.24 3.33 16 5 N -0.26 -7.99 11.51 -48.18 -0.55 -8.55 16 6 N -0.28 -8.03 12.51 37.02 0.46 -7.57 16 7 S 0.49 11.92 23.05 -56.49 -1.30 10.62 16 8 C -0.31 -9.59 6.81 24.62 0.17 -9.43 16 9 C 0.60 21.40 7.77 86.59 0.67 22.07 16 10 O -0.55 -23.17 14.21 -4.10 -0.06 -23.22 16 11 N -0.68 -21.81 4.91 -445.69 -2.19 -24.00 16 12 C 0.13 4.37 2.81 45.07 0.13 4.49 16 13 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 14 C -0.11 -2.81 5.59 30.62 0.17 -2.64 16 15 C -0.12 -3.04 5.21 30.67 0.16 -2.88 16 16 C 0.15 5.34 3.49 44.98 0.16 5.50 16 17 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 18 C -0.13 -4.08 7.96 71.98 0.57 -3.51 16 19 N -0.59 -26.57 2.90 -675.22 -1.96 -28.53 16 20 C -0.24 -11.94 8.58 84.03 0.72 -11.22 16 21 H 0.08 3.63 6.24 -2.91 -0.02 3.61 16 22 C -0.05 -2.64 4.94 84.86 0.42 -2.22 16 23 N -0.93 -55.46 11.23 21.65 0.24 -55.21 16 24 Si 0.94 45.50 29.58 68.60 2.03 47.53 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 C 0.17 7.78 4.88 86.36 0.42 8.20 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 3.45 5.49 -2.38 -0.01 3.44 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.40 10.95 6.20 -92.71 -0.57 10.37 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.48 6.40 -2.39 -0.02 1.47 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.03 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.05 1.64 7.42 -2.39 -0.02 1.63 16 44 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 45 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.05 2.73 6.15 -2.38 -0.01 2.72 16 Total: -1.00 -67.87 375.51 2.20 -65.66 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.43 Total: 17.88 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.11 Total: 5.39 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -4.00 Total: -123.86 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 11.92 SS G_CDS: -1.30 Total: 10.62 kcal Total: -67.87 2.20 -65.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071919338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.479 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds