Wall clock time and date at job start Tue Mar 31 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 109.46750 * 2 1 4 4 F 1.39891 * 109.46889 * 239.99903 * 2 1 3 5 5 C 1.50701 * 109.47020 * 119.99757 * 2 1 3 6 6 C 1.38357 * 119.85577 * 269.99727 * 5 2 1 7 7 C 1.37959 * 120.14309 * 179.97438 * 6 5 2 8 8 C 1.39567 * 119.85639 * 359.97438 * 7 6 5 9 9 C 1.47844 * 120.14849 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99533 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00440 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00135 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47030 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.85354 * 43.79856 * 13 12 11 15 15 C 1.53784 * 113.61449 * 174.99701 * 13 12 11 16 16 C 1.53780 * 87.08421 * 139.97790 * 15 13 12 17 17 H 1.09000 * 113.61203 * 89.19720 * 16 15 13 18 18 N 1.46496 * 113.61432 * 220.02217 * 16 15 13 19 19 C 1.36945 * 119.99718 * 204.99886 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.53788 * 113.61144 * 272.49064 * 13 12 11 28 28 C 1.39582 * 119.71136 * 0.24988 * 8 7 6 29 29 C 1.37959 * 119.85178 * 359.51505 * 28 8 7 30 30 H 1.08999 * 109.47036 * 299.99409 * 1 2 3 31 31 H 1.08993 * 109.47083 * 60.00051 * 1 2 3 32 32 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.92931 * 359.97438 * 6 5 2 34 34 H 1.07999 * 120.06785 * 180.02562 * 7 6 5 35 35 H 0.96992 * 119.99867 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47259 * 59.99014 * 12 11 9 37 37 H 1.09005 * 109.46580 * 299.99465 * 12 11 9 38 38 H 1.08999 * 113.61131 * 25.42784 * 15 13 12 39 39 H 1.08996 * 113.69036 * 254.53819 * 15 13 12 40 40 H 0.96996 * 120.00499 * 24.99616 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61154 * 105.47510 * 27 13 12 43 43 H 1.08997 * 113.61469 * 334.56897 * 27 13 12 44 44 H 1.07996 * 120.07456 * 179.72046 * 28 8 7 45 45 H 1.07997 * 119.92540 * 180.23209 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0324 -0.7104 1.2305 6 6 2.2620 0.0042 2.3928 7 6 2.7213 -0.6402 3.5229 8 6 2.9539 -2.0160 3.4921 9 6 3.4467 -2.7130 4.6992 10 8 3.6497 -2.0877 5.7216 11 7 3.6707 -4.0416 4.6660 12 6 4.1585 -4.7323 5.8624 13 6 4.3273 -6.2222 5.5579 14 1 4.8018 -6.4061 4.5940 15 6 4.9521 -7.0203 6.7144 16 6 3.9523 -8.1394 6.3782 17 1 4.3240 -8.8493 5.6393 18 7 3.3839 -8.7929 7.5596 19 6 2.9122 -10.0756 7.4721 20 1 2.9590 -10.6051 6.5320 21 6 2.3741 -10.6951 8.5916 22 7 2.3166 -10.0495 9.7372 23 14 1.7301 -12.4445 8.4721 24 1 0.2922 -12.4184 8.1021 25 1 2.4946 -13.1836 7.4356 26 1 1.8915 -13.1221 9.7836 27 6 3.0485 -7.0459 5.7844 28 6 2.7247 -2.7302 2.3149 29 6 2.2607 -2.0745 1.1932 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.0813 1.0687 2.4155 34 1 2.8998 -0.0813 4.4296 35 1 3.5083 -4.5406 3.8503 36 1 3.4405 -4.6064 6.6727 37 1 5.1189 -4.3106 6.1591 38 1 4.7900 -6.5697 7.6935 39 1 5.9921 -7.2981 6.5432 40 1 3.3415 -8.3172 8.4038 41 1 1.9402 -10.4823 10.5195 42 1 2.5519 -7.3438 4.8611 43 1 2.3661 -6.6023 6.5093 44 1 2.9070 -3.7942 2.2832 45 1 2.0794 -2.6266 0.2829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086287608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:35 Heat of formation + Delta-G solvation = -84.353913 kcal Electronic energy + Delta-G solvation = -27675.717546 eV Core-core repulsion = 23329.488296 eV Total energy + Delta-G solvation = -4346.229250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.50891 -47.51600 -40.56074 -39.08555 -38.29269 -34.87455 -33.65980 -33.25289 -31.54891 -30.62464 -30.07745 -27.51434 -25.19979 -25.09450 -23.86824 -23.17435 -22.33873 -21.13110 -20.63732 -19.19126 -18.59668 -17.93623 -17.62976 -17.05312 -16.82509 -16.33054 -15.56979 -15.41626 -15.07438 -14.95564 -14.68266 -14.40175 -14.31824 -14.12045 -13.89203 -13.69479 -13.63727 -13.46240 -13.28265 -13.11789 -12.98805 -12.80778 -12.61246 -11.96378 -11.86753 -11.66239 -11.48725 -11.43451 -11.26898 -10.86105 -10.57967 -10.35645 -10.17826 -9.99792 -9.86868 -9.57883 -9.54094 -9.51823 -9.10391 -8.89452 -6.99028 -5.80639 -3.09723 0.19792 0.81405 2.44913 2.95012 3.08846 3.36449 3.40841 3.45951 3.47846 3.53479 3.85797 4.13164 4.32025 4.35120 4.47104 4.55944 4.77145 4.80768 4.87622 4.91559 4.94697 5.09801 5.17288 5.18494 5.27868 5.43134 5.43996 5.46045 5.64989 5.75529 5.77237 5.80423 5.85305 5.90333 6.05955 6.16506 6.24057 6.27539 6.31718 6.38423 6.55064 6.78328 7.07443 7.31514 7.66551 8.00273 8.37853 9.48901 10.07028 10.41073 11.41631 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.001732 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.774688 B =16163.465760 C =16853.683813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.336 3.664 3 F -0.194 7.194 4 F -0.194 7.194 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.061 4.061 8 C -0.112 4.112 9 C 0.552 3.448 10 O -0.535 6.535 11 N -0.717 5.717 12 C 0.131 3.869 13 C -0.128 4.128 14 H 0.088 0.912 15 C -0.142 4.142 16 C 0.166 3.834 17 H 0.076 0.924 18 N -0.713 5.713 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.282 1.282 26 H -0.291 1.291 27 C -0.161 4.161 28 C -0.086 4.086 29 C -0.094 4.094 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 21.798 -21.249 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.300 3.700 3 F -0.175 7.175 4 F -0.174 7.174 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.079 4.079 8 C -0.115 4.115 9 C 0.338 3.662 10 O -0.412 6.412 11 N -0.368 5.368 12 C 0.008 3.992 13 C -0.147 4.147 14 H 0.107 0.893 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.218 1.218 27 C -0.202 4.202 28 C -0.105 4.105 29 C -0.112 4.112 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.153 0.847 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.698 22.013 -20.521 30.103 hybrid contribution -0.403 -0.964 -0.302 1.088 sum -1.101 21.049 -20.824 29.629 Atomic orbital electron populations 1.22785 0.90297 1.05974 1.05672 1.19487 0.93853 0.75048 0.81649 1.93035 1.90638 1.37090 1.96702 1.93034 1.90633 1.80879 1.52897 1.20439 1.03096 0.95277 0.94930 1.20933 0.98259 1.00551 0.91538 1.21293 0.94915 0.93082 0.98657 1.20203 1.02313 0.94863 0.94118 1.18227 0.78047 0.82270 0.87644 1.90798 1.51806 1.66157 1.32488 1.45988 1.67128 1.07735 1.15975 1.21511 0.99566 0.91369 0.86724 1.22653 1.00456 0.91730 0.99897 0.89341 1.23449 0.99366 0.97885 0.97485 1.21516 0.91657 0.90687 0.90770 0.90650 1.42414 1.71034 1.13950 1.07646 1.19297 1.32564 0.90205 0.95527 0.91096 1.24780 1.01917 0.98566 0.95695 1.69663 1.51015 1.37075 1.00200 0.86185 0.78756 0.84450 0.76754 1.21704 1.20739 1.21751 1.23964 0.96089 0.99279 1.00909 1.21338 0.97231 1.00169 0.91748 1.20878 0.98180 0.93036 0.99085 0.88922 0.89512 0.88889 0.84397 0.83781 0.76497 0.90910 0.91460 0.90062 0.91941 0.78053 0.93433 0.92770 0.90299 0.84672 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.82 9.37 37.16 0.35 -0.47 16 2 C 0.34 2.34 2.32 -27.88 -0.06 2.28 16 3 F -0.19 -1.61 16.19 2.25 0.04 -1.58 16 4 F -0.19 -1.60 16.20 2.25 0.04 -1.56 16 5 C -0.14 -1.01 5.00 -104.53 -0.52 -1.54 16 6 C -0.09 -0.72 9.38 -39.64 -0.37 -1.09 16 7 C -0.06 -0.55 9.60 -39.19 -0.38 -0.93 16 8 C -0.11 -1.09 5.87 -104.97 -0.62 -1.71 16 9 C 0.55 6.81 7.77 -12.33 -0.10 6.72 16 10 O -0.53 -8.58 16.35 5.31 0.09 -8.50 16 11 N -0.72 -7.72 5.51 -61.25 -0.34 -8.05 16 12 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 13 C -0.13 -1.62 3.76 -89.80 -0.34 -1.95 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 16 C 0.17 3.11 4.48 -67.12 -0.30 2.81 16 17 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.71 -17.49 5.40 -52.64 -0.28 -17.77 16 19 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.16 -2.55 7.43 -25.91 -0.19 -2.74 16 28 C -0.09 -0.64 9.54 -39.18 -0.37 -1.02 16 29 C -0.09 -0.65 9.38 -39.64 -0.37 -1.03 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.14 0.82 7.59 -52.49 -0.40 0.42 16 34 H 0.14 1.31 7.65 -52.49 -0.40 0.91 16 35 H 0.40 3.23 6.51 -40.82 -0.27 2.96 16 36 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.39 10.10 7.92 -40.82 -0.32 9.78 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 44 H 0.14 0.71 6.41 -52.49 -0.34 0.37 16 45 H 0.14 0.73 7.59 -52.49 -0.40 0.34 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.88 384.56 -8.99 -41.86 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.29 Total: 8.67 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.74 Total: -8.73 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.10 Total: -53.05 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.88 -8.99 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086287608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.490 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds