Wall clock time and date at job start Tue Mar 31 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39900 * 109.46750 * 2 1 4 4 F 1.39891 * 109.46889 * 239.99903 * 2 1 3 5 5 C 1.50701 * 109.47020 * 119.99757 * 2 1 3 6 6 C 1.38357 * 119.85577 * 269.99727 * 5 2 1 7 7 C 1.37959 * 120.14309 * 179.97438 * 6 5 2 8 8 C 1.39567 * 119.85639 * 359.97438 * 7 6 5 9 9 C 1.47844 * 120.14849 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99533 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00440 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00135 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47030 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.85354 * 43.79856 * 13 12 11 15 15 C 1.53784 * 113.61449 * 174.99701 * 13 12 11 16 16 C 1.53780 * 87.08421 * 139.97790 * 15 13 12 17 17 H 1.09000 * 113.61203 * 89.19720 * 16 15 13 18 18 N 1.46496 * 113.61432 * 220.02217 * 16 15 13 19 19 C 1.36945 * 119.99718 * 204.99886 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.53788 * 113.61144 * 272.49064 * 13 12 11 28 28 C 1.39582 * 119.71136 * 0.24988 * 8 7 6 29 29 C 1.37959 * 119.85178 * 359.51505 * 28 8 7 30 30 H 1.08999 * 109.47036 * 299.99409 * 1 2 3 31 31 H 1.08993 * 109.47083 * 60.00051 * 1 2 3 32 32 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.92931 * 359.97438 * 6 5 2 34 34 H 1.07999 * 120.06785 * 180.02562 * 7 6 5 35 35 H 0.96992 * 119.99867 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47259 * 59.99014 * 12 11 9 37 37 H 1.09005 * 109.46580 * 299.99465 * 12 11 9 38 38 H 1.08999 * 113.61131 * 25.42784 * 15 13 12 39 39 H 1.08996 * 113.69036 * 254.53819 * 15 13 12 40 40 H 0.96996 * 120.00499 * 24.99616 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61154 * 105.47510 * 27 13 12 43 43 H 1.08997 * 113.61469 * 334.56897 * 27 13 12 44 44 H 1.07996 * 120.07456 * 179.72046 * 28 8 7 45 45 H 1.07997 * 119.92540 * 180.23209 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0324 -0.7104 1.2305 6 6 2.2620 0.0042 2.3928 7 6 2.7213 -0.6402 3.5229 8 6 2.9539 -2.0160 3.4921 9 6 3.4467 -2.7130 4.6992 10 8 3.6497 -2.0877 5.7216 11 7 3.6707 -4.0416 4.6660 12 6 4.1585 -4.7323 5.8624 13 6 4.3273 -6.2222 5.5579 14 1 4.8018 -6.4061 4.5940 15 6 4.9521 -7.0203 6.7144 16 6 3.9523 -8.1394 6.3782 17 1 4.3240 -8.8493 5.6393 18 7 3.3839 -8.7929 7.5596 19 6 2.9122 -10.0756 7.4721 20 1 2.9590 -10.6051 6.5320 21 6 2.3741 -10.6951 8.5916 22 7 2.3166 -10.0495 9.7372 23 14 1.7301 -12.4445 8.4721 24 1 0.2922 -12.4184 8.1021 25 1 2.4946 -13.1836 7.4356 26 1 1.8915 -13.1221 9.7836 27 6 3.0485 -7.0459 5.7844 28 6 2.7247 -2.7302 2.3149 29 6 2.2607 -2.0745 1.1932 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.0813 1.0687 2.4155 34 1 2.8998 -0.0813 4.4296 35 1 3.5083 -4.5406 3.8503 36 1 3.4405 -4.6064 6.6727 37 1 5.1189 -4.3106 6.1591 38 1 4.7900 -6.5697 7.6935 39 1 5.9921 -7.2981 6.5432 40 1 3.3415 -8.3172 8.4038 41 1 1.9402 -10.4823 10.5195 42 1 2.5519 -7.3438 4.8611 43 1 2.3661 -6.6023 6.5093 44 1 2.9070 -3.7942 2.2832 45 1 2.0794 -2.6266 0.2829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086287608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:35 Heat of formation + Delta-G solvation = -104.131849 kcal Electronic energy + Delta-G solvation = -27676.575182 eV Core-core repulsion = 23329.488296 eV Total energy + Delta-G solvation = -4347.086886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.07961 -48.09972 -41.40412 -40.12228 -39.33831 -36.13723 -35.11980 -34.10466 -32.33468 -32.01163 -30.94127 -28.67520 -26.44532 -26.14577 -25.42223 -23.79936 -23.08089 -22.40430 -21.49712 -20.50463 -19.36793 -18.99529 -18.51841 -18.34028 -17.33038 -17.31029 -16.74455 -16.53442 -16.12312 -15.97483 -15.65114 -15.59080 -15.15589 -14.96627 -14.89268 -14.67296 -14.56968 -14.30884 -14.23248 -13.99116 -13.50044 -13.42420 -13.38891 -13.22222 -13.10080 -13.03407 -12.91518 -12.63091 -12.24235 -12.21224 -12.08173 -12.02530 -11.61479 -11.54705 -11.18065 -10.97203 -10.79688 -10.32537 -10.13434 -10.00105 -8.96581 -7.93734 -5.21995 -0.47199 0.23033 1.47953 1.49511 1.57922 1.64492 2.05150 2.54528 2.57441 2.66544 3.05683 3.34411 3.38043 3.58420 3.66429 3.72854 3.74470 3.83160 3.86346 3.94435 4.21050 4.26645 4.30425 4.36259 4.42425 4.51329 4.56220 4.61859 4.69095 4.75544 4.89172 4.97817 5.00061 5.00629 5.04791 5.07196 5.18513 5.22562 5.24280 5.32523 5.41974 5.53534 5.65101 5.74289 6.28613 6.45817 7.10868 7.34033 8.12910 8.34102 9.29723 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.001732 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.774688 B =16163.465760 C =16853.683813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.331 3.669 3 F -0.204 7.204 4 F -0.201 7.201 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.072 4.072 8 C -0.130 4.130 9 C 0.550 3.450 10 O -0.581 6.581 11 N -0.705 5.705 12 C 0.137 3.863 13 C -0.095 4.095 14 H 0.124 0.876 15 C -0.138 4.138 16 C 0.142 3.858 17 H 0.082 0.918 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.973 3.027 24 H -0.288 1.288 25 H -0.267 1.267 26 H -0.299 1.299 27 C -0.153 4.153 28 C -0.078 4.078 29 C -0.093 4.093 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.416 0.584 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.161 0.839 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 21.569 -24.453 32.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.295 3.705 3 F -0.185 7.185 4 F -0.182 7.182 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.091 4.091 8 C -0.133 4.133 9 C 0.338 3.662 10 O -0.462 6.462 11 N -0.356 5.356 12 C 0.013 3.987 13 C -0.114 4.114 14 H 0.142 0.858 15 C -0.177 4.177 16 C 0.033 3.967 17 H 0.100 0.900 18 N -0.368 5.368 19 C -0.373 4.373 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.191 1.191 26 H -0.225 1.225 27 C -0.194 4.194 28 C -0.096 4.096 29 C -0.111 4.111 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.254 0.746 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.178 0.822 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.732 21.784 -23.823 32.290 hybrid contribution -0.352 -0.814 0.591 1.066 sum -1.085 20.970 -23.232 31.315 Atomic orbital electron populations 1.22825 0.88085 1.07006 1.06550 1.19771 0.95314 0.74382 0.81039 1.93016 1.90924 1.37839 1.96709 1.93017 1.90900 1.80997 1.53301 1.20626 1.02410 0.95732 0.94954 1.21033 0.97916 1.01234 0.91136 1.21315 0.95594 0.93174 0.98975 1.20075 1.04141 0.95109 0.93953 1.18646 0.77208 0.82448 0.87865 1.90773 1.53949 1.67150 1.34376 1.45816 1.66420 1.07402 1.16004 1.21296 0.99039 0.91455 0.86898 1.22481 0.97767 0.90846 1.00304 0.85767 1.23335 0.99615 0.96749 0.98003 1.21971 0.93557 0.91733 0.89433 0.90001 1.42646 1.71767 1.13480 1.08879 1.19739 1.30740 0.91230 0.95543 0.90198 1.25609 1.03491 1.02605 0.95645 1.69829 1.53015 1.38667 1.00809 0.85136 0.78105 0.79988 0.76522 1.21553 1.19139 1.22542 1.23732 0.96671 0.98334 1.00655 1.21563 0.96083 1.01257 0.90724 1.21143 0.97374 0.92938 0.99633 0.88122 0.88644 0.87784 0.83146 0.84726 0.74594 0.93264 0.91392 0.91567 0.90270 0.79697 0.94171 0.91103 0.92665 0.82194 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 9.37 71.98 0.67 -0.50 16 2 C 0.33 3.95 2.32 29.85 0.07 4.02 16 3 F -0.20 -3.10 16.19 44.97 0.73 -2.38 16 4 F -0.20 -2.90 16.20 44.97 0.73 -2.17 16 5 C -0.14 -1.74 5.00 -19.81 -0.10 -1.84 16 6 C -0.10 -1.34 9.38 22.23 0.21 -1.13 16 7 C -0.07 -1.28 9.60 22.52 0.22 -1.06 16 8 C -0.13 -2.38 5.87 -20.09 -0.12 -2.50 16 9 C 0.55 13.26 7.77 86.79 0.67 13.94 16 10 O -0.58 -19.12 16.35 -3.90 -0.06 -19.18 16 11 N -0.70 -13.83 5.51 -465.97 -2.57 -16.40 16 12 C 0.14 3.25 5.51 86.38 0.48 3.73 16 13 C -0.10 -2.15 3.76 -10.27 -0.04 -2.19 16 14 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.14 -4.03 7.39 31.12 0.23 -3.80 16 16 C 0.14 5.18 4.48 45.52 0.20 5.38 16 17 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 18 N -0.73 -36.18 5.40 -320.45 -1.73 -37.91 16 19 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 22 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 23 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 C -0.15 -4.60 7.43 31.13 0.23 -4.37 16 28 C -0.08 -0.95 9.54 22.53 0.21 -0.74 16 29 C -0.09 -1.03 9.38 22.23 0.21 -0.82 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.15 1.63 7.59 -2.91 -0.02 1.61 16 34 H 0.13 2.58 7.65 -2.91 -0.02 2.56 16 35 H 0.42 5.31 6.51 -92.71 -0.60 4.70 16 36 H 0.05 1.43 7.84 -2.39 -0.02 1.41 16 37 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.37 20.11 7.92 -92.71 -0.73 19.38 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 44 H 0.16 1.05 6.41 -2.91 -0.02 1.03 16 45 H 0.16 1.10 7.59 -2.91 -0.02 1.08 16 Total: -1.00 -73.12 384.56 3.55 -69.56 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.31 Total: 28.62 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.46 Total: -8.38 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.01 Total: -113.89 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 1.46 Total: -4.54 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.12 3.55 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086287608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.567 kcal (2) G-P(sol) polarization free energy of solvation -73.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds