Wall clock time and date at job start Tue Mar 31 2020 21:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39911 * 109.46958 * 2 1 4 4 F 1.39901 * 109.47250 * 240.00110 * 2 1 3 5 5 C 1.50696 * 109.47435 * 119.99571 * 2 1 3 6 6 C 1.38353 * 119.85964 * 270.00621 * 5 2 1 7 7 C 1.37956 * 120.14971 * 179.97438 * 6 5 2 8 8 C 1.39581 * 119.85186 * 0.02562 * 7 6 5 9 9 C 1.47843 * 120.14181 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00413 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.85401 * 45.32751 * 13 12 11 15 15 C 1.53778 * 113.61765 * 176.52930 * 13 12 11 16 16 C 1.53780 * 87.08158 * 139.97812 * 15 13 12 17 17 H 1.09000 * 113.61319 * 219.93749 * 16 15 13 18 18 N 1.46497 * 113.61578 * 89.11802 * 16 15 13 19 19 C 1.36934 * 119.99880 * 154.99727 * 18 16 15 20 20 H 1.08004 * 120.00625 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99847 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00111 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00155 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46800 * 60.00276 * 23 21 19 25 25 H 1.48498 * 109.47012 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47083 * 300.00202 * 23 21 19 27 27 C 1.53789 * 113.61202 * 274.13754 * 13 12 11 28 28 C 1.39573 * 119.70918 * 0.24765 * 8 7 6 29 29 C 1.37962 * 119.85211 * 359.47305 * 28 8 7 30 30 H 1.08999 * 109.47357 * 300.00027 * 1 2 3 31 31 H 1.09005 * 109.47397 * 60.00250 * 1 2 3 32 32 H 1.09007 * 109.46615 * 179.97438 * 1 2 3 33 33 H 1.08007 * 119.92326 * 0.02562 * 6 5 2 34 34 H 1.08001 * 120.07492 * 179.97438 * 7 6 5 35 35 H 0.96995 * 120.00015 * 359.72451 * 11 9 8 36 36 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 37 37 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 38 38 H 1.08999 * 113.61565 * 254.52699 * 15 13 12 39 39 H 1.09000 * 113.61291 * 25.34817 * 15 13 12 40 40 H 0.96999 * 119.99906 * 335.00236 * 18 16 15 41 41 H 0.96999 * 120.00310 * 180.02562 * 22 21 19 42 42 H 1.08999 * 113.61160 * 334.56427 * 27 13 12 43 43 H 1.08991 * 113.61631 * 105.46607 * 27 13 12 44 44 H 1.08001 * 120.07226 * 179.72750 * 28 8 7 45 45 H 1.07999 * 119.92663 * 180.27041 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7103 1.2305 6 6 2.2619 0.0042 2.3928 7 6 2.7213 -0.6401 3.5228 8 6 2.9551 -2.0158 3.4916 9 6 3.4480 -2.7126 4.6988 10 8 3.6509 -2.0875 5.7212 11 7 3.6722 -4.0413 4.6656 12 6 4.1612 -4.7317 5.8615 13 6 4.3312 -6.2213 5.5567 14 1 4.8294 -6.4045 4.6047 15 6 4.9227 -7.0259 6.7262 16 6 3.9269 -8.1393 6.3609 17 1 3.4806 -8.6274 7.2273 18 7 4.4467 -9.0917 5.3765 19 6 3.9451 -10.3647 5.3243 20 1 3.1659 -10.6667 6.0086 21 6 4.4372 -11.2669 4.3911 22 7 5.3863 -10.8989 3.5569 23 14 3.7534 -13.0039 4.3204 24 1 2.2970 -12.9512 4.0350 25 1 4.4408 -13.7630 3.2450 26 1 3.9783 -13.6779 5.6243 27 6 3.0428 -7.0396 5.7452 28 6 2.7270 -2.7297 2.3142 29 6 2.2620 -2.0742 1.1928 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.0802 1.0686 2.4157 34 1 2.9004 -0.0811 4.4294 35 1 3.5065 -4.5409 3.8508 36 1 5.1217 -4.3098 6.1575 37 1 3.4438 -4.6060 6.6725 38 1 5.9655 -7.3072 6.5795 39 1 4.7388 -6.5768 7.7023 40 1 5.1463 -8.8204 4.7617 41 1 5.7300 -11.5292 2.9045 42 1 2.3428 -6.5951 6.4526 43 1 2.5702 -7.3320 4.8076 44 1 2.9101 -3.7936 2.2822 45 1 2.0809 -2.6261 0.2824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086566909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:38 Heat of formation + Delta-G solvation = -83.642518 kcal Electronic energy + Delta-G solvation = -27905.340000 eV Core-core repulsion = 23559.141598 eV Total energy + Delta-G solvation = -4346.198402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.45020 -47.45745 -40.51427 -39.07083 -38.30266 -34.83757 -33.60238 -33.18090 -31.48998 -30.57499 -29.98845 -27.50149 -25.17272 -25.05765 -23.73860 -23.12845 -22.35325 -21.67896 -20.55915 -18.81173 -18.32848 -17.87611 -17.64173 -17.19397 -16.77339 -16.25846 -15.51643 -15.34152 -15.01986 -14.88665 -14.61079 -14.30932 -14.21457 -14.07834 -13.84181 -13.78840 -13.62543 -13.40681 -13.22878 -13.07425 -12.91679 -12.81169 -12.57275 -12.30622 -11.96958 -11.60893 -11.45440 -11.43058 -11.08154 -10.86501 -10.54539 -10.30075 -10.22456 -9.89443 -9.73032 -9.54535 -9.50581 -9.47281 -9.06580 -8.91994 -7.04516 -5.84546 -3.13814 0.25123 0.87473 2.49307 3.00674 3.14447 3.39629 3.41212 3.44378 3.45169 3.58687 3.91242 4.18303 4.38718 4.41640 4.52148 4.52764 4.83394 4.86157 4.92059 4.99632 5.01161 5.15361 5.18690 5.22826 5.31712 5.41168 5.50215 5.56246 5.64268 5.72052 5.80741 5.84785 5.87949 5.92223 6.05397 6.16512 6.26723 6.32596 6.34523 6.53759 6.69143 6.84388 6.99204 7.36970 7.64816 8.03802 8.34594 9.45252 10.02457 10.36631 11.37760 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.002031 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.789773 B =13784.995956 C =15355.749983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.336 3.664 3 F -0.194 7.194 4 F -0.193 7.193 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.061 4.061 8 C -0.113 4.113 9 C 0.553 3.447 10 O -0.539 6.539 11 N -0.716 5.716 12 C 0.130 3.870 13 C -0.121 4.121 14 H 0.093 0.907 15 C -0.147 4.147 16 C 0.168 3.832 17 H 0.063 0.937 18 N -0.706 5.706 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.169 4.169 28 C -0.085 4.085 29 C -0.093 4.093 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 23.822 -5.008 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.300 3.700 3 F -0.175 7.175 4 F -0.174 7.174 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.116 4.116 9 C 0.339 3.661 10 O -0.417 6.417 11 N -0.367 5.367 12 C 0.007 3.993 13 C -0.139 4.139 14 H 0.111 0.889 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.210 4.210 28 C -0.104 4.104 29 C -0.111 4.111 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.155 0.845 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.829 24.045 -4.282 25.970 hybrid contribution -0.051 -1.023 -0.951 1.398 sum -8.879 23.022 -5.233 25.223 Atomic orbital electron populations 1.22782 0.90334 1.05975 1.05610 1.19485 0.93828 0.75034 0.81699 1.93035 1.90646 1.37110 1.96711 1.93042 1.90619 1.80865 1.52849 1.20438 1.03100 0.95275 0.94920 1.20917 0.98425 1.00483 0.91562 1.21273 0.95068 0.93047 0.98628 1.20198 1.02403 0.94859 0.94151 1.18224 0.77969 0.82258 0.87619 1.90772 1.52169 1.66212 1.32559 1.46011 1.66763 1.07711 1.16223 1.21542 0.99258 0.91849 0.86613 1.22727 0.99926 0.90881 1.00411 0.88859 1.23439 1.00578 0.97902 0.96789 1.21085 0.92538 0.88388 0.92469 0.91919 1.42162 1.44678 1.09135 1.38424 1.19244 1.16018 0.87927 1.14282 0.91035 1.24766 0.98969 0.98535 0.98561 1.69646 1.30333 1.35246 1.22851 0.86244 0.78228 0.84402 0.77163 1.21215 1.21666 1.21172 1.23925 0.95785 0.99464 1.01831 1.21384 0.96913 1.00346 0.91715 1.20902 0.98020 0.93028 0.99146 0.88966 0.89530 0.88873 0.84445 0.83854 0.76213 0.91553 0.91309 0.91270 0.90412 0.78115 0.93356 0.91377 0.91495 0.84523 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 9.37 37.16 0.35 -0.58 16 2 C 0.34 2.59 2.32 -27.89 -0.06 2.53 16 3 F -0.19 -1.74 16.20 2.25 0.04 -1.70 16 4 F -0.19 -1.78 16.19 2.25 0.04 -1.74 16 5 C -0.14 -1.12 5.00 -104.54 -0.52 -1.64 16 6 C -0.10 -0.78 9.38 -39.64 -0.37 -1.15 16 7 C -0.06 -0.59 9.60 -39.18 -0.38 -0.96 16 8 C -0.11 -1.18 5.87 -104.97 -0.62 -1.80 16 9 C 0.55 7.10 7.77 -12.33 -0.10 7.00 16 10 O -0.54 -8.64 16.35 5.33 0.09 -8.55 16 11 N -0.72 -8.40 5.51 -61.25 -0.34 -8.73 16 12 C 0.13 1.66 5.50 -4.04 -0.02 1.64 16 13 C -0.12 -1.71 3.62 -89.80 -0.33 -2.04 16 14 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 16 C 0.17 3.15 4.57 -67.03 -0.31 2.85 16 17 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 18 N -0.71 -16.92 5.31 -52.55 -0.28 -17.20 16 19 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.17 -2.67 7.44 -25.82 -0.19 -2.87 16 28 C -0.08 -0.74 9.54 -39.18 -0.37 -1.11 16 29 C -0.09 -0.76 9.38 -39.64 -0.37 -1.13 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.14 0.87 7.59 -52.48 -0.40 0.47 16 34 H 0.14 1.34 7.65 -52.49 -0.40 0.93 16 35 H 0.40 4.00 6.51 -40.82 -0.27 3.74 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.14 0.97 6.41 -52.49 -0.34 0.63 16 45 H 0.14 0.93 7.59 -52.49 -0.40 0.53 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -31.87 384.48 -8.98 -40.84 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.29 Total: 10.00 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.73 Total: -8.87 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.11 Total: -52.60 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.87 -8.98 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086566909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.798 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds