Wall clock time and date at job start Tue Mar 31 2020 21:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39902 * 109.47120 * 2 1 4 4 F 1.39900 * 109.46992 * 120.00419 * 2 1 3 5 5 C 1.50699 * 109.46752 * 240.00581 * 2 1 3 6 6 O 1.21281 * 120.00189 * 24.99724 * 5 2 1 7 7 N 1.34780 * 119.99982 * 205.00116 * 5 2 1 8 8 C 1.46494 * 119.99777 * 180.02562 * 7 5 2 9 9 H 1.08993 * 109.50397 * 30.35908 * 8 7 5 10 10 C 1.53194 * 109.49682 * 270.28809 * 8 7 5 11 11 N 1.46933 * 108.77679 * 294.68965 * 10 8 7 12 12 C 1.36931 * 120.63194 * 126.41444 * 11 10 8 13 13 H 1.08007 * 119.99876 * 328.98545 * 12 11 10 14 14 C 1.38810 * 120.00184 * 148.99445 * 12 11 10 15 15 N 1.31620 * 119.99682 * 336.96828 * 14 12 11 16 16 Si 1.86799 * 120.00236 * 156.97446 * 14 12 11 17 17 H 1.48494 * 109.47473 * 84.98808 * 16 14 12 18 18 H 1.48501 * 109.47341 * 204.99431 * 16 14 12 19 19 H 1.48509 * 109.46977 * 324.98723 * 16 14 12 20 20 C 1.46925 * 118.73390 * 306.38917 * 11 10 8 21 21 C 1.53193 * 108.77900 * 53.60971 * 20 11 10 22 22 C 1.53045 * 109.49591 * 150.42405 * 8 7 5 23 23 H 1.09002 * 109.46051 * 178.60235 * 22 8 7 24 24 C 1.50702 * 109.45536 * 298.56335 * 22 8 7 25 25 C 1.38241 * 119.99576 * 248.86837 * 24 22 8 26 26 C 1.38235 * 119.99600 * 179.79219 * 25 24 22 27 27 C 1.38225 * 120.00094 * 0.43630 * 26 25 24 28 28 C 1.38237 * 120.00169 * 359.81574 * 27 26 25 29 29 C 1.38226 * 120.00288 * 69.14448 * 24 22 8 30 30 H 1.08994 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46616 * 299.99845 * 1 2 3 32 32 H 1.08997 * 109.47283 * 59.99217 * 1 2 3 33 33 H 0.97000 * 119.99484 * 359.97438 * 7 5 2 34 34 H 1.09003 * 109.58429 * 54.47349 * 10 8 7 35 35 H 1.08997 * 109.58926 * 174.90298 * 10 8 7 36 36 H 0.97005 * 120.00001 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.58588 * 173.39650 * 20 11 10 38 38 H 1.09000 * 109.59102 * 293.67446 * 20 11 10 39 39 H 1.09003 * 109.49528 * 65.31350 * 21 20 11 40 40 H 1.08993 * 109.49729 * 185.40759 * 21 20 11 41 41 H 1.07995 * 120.00140 * 359.97438 * 25 24 22 42 42 H 1.07998 * 119.99832 * 180.27505 * 26 25 24 43 43 H 1.08002 * 120.00418 * 179.83439 * 27 26 25 44 44 H 1.08001 * 120.00025 * 179.97438 * 28 27 26 45 45 H 1.08000 * 120.00465 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0323 -0.7103 -1.2306 6 8 1.3369 -0.7703 -2.2224 7 7 3.2543 -1.2789 -1.2289 8 6 3.7427 -1.9689 -2.4253 9 1 3.3135 -1.5053 -3.3134 10 6 3.3314 -3.4435 -2.3688 11 7 4.0211 -4.0840 -1.2405 12 6 3.3145 -4.7718 -0.2904 13 1 2.3069 -4.4710 -0.0438 14 6 3.8931 -5.8554 0.3558 15 7 4.8865 -6.5063 -0.2116 16 14 3.2619 -6.3902 2.0306 17 1 2.0993 -7.2971 1.8550 18 1 4.3402 -7.1033 2.7615 19 1 2.8446 -5.1950 2.8070 20 6 5.4834 -3.9728 -1.1515 21 6 5.8707 -2.4923 -1.2216 22 6 5.2688 -1.8704 -2.4845 23 1 5.6335 -2.4051 -3.3616 24 6 5.6752 -0.4220 -2.5749 25 6 6.2374 0.0667 -3.7394 26 6 6.6062 1.3963 -3.8237 27 6 6.4211 2.2349 -2.7406 28 6 5.8637 1.7450 -1.5744 29 6 5.4910 0.4164 -1.4914 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.8105 -1.2306 -0.4357 34 1 2.2531 -3.5169 -2.2272 35 1 3.6145 -3.9377 -3.2982 36 1 5.2907 -7.2638 0.2398 37 1 5.8251 -4.3955 -0.2066 38 1 5.9421 -4.5123 -1.9801 39 1 5.4872 -1.9740 -0.3427 40 1 6.9563 -2.4013 -1.2533 41 1 6.3858 -0.5895 -4.5842 42 1 7.0413 1.7792 -4.7350 43 1 6.7117 3.2731 -2.8055 44 1 5.7195 2.4001 -0.7280 45 1 5.0555 0.0337 -0.5803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087419438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:27 Heat of formation + Delta-G solvation = -85.889131 kcal Electronic energy + Delta-G solvation = -31423.045686 eV Core-core repulsion = 27076.749864 eV Total energy + Delta-G solvation = -4346.295822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.12084 -47.11291 -40.31609 -38.95676 -37.38807 -34.31189 -32.96451 -31.56873 -31.33132 -30.86412 -29.68053 -28.85611 -25.31065 -24.93784 -22.91986 -22.55801 -22.10830 -21.00957 -20.51602 -18.98248 -18.49789 -17.67379 -16.93293 -16.71206 -16.41428 -15.44595 -15.35196 -15.03243 -14.76768 -14.57766 -14.50646 -13.99545 -13.84176 -13.51428 -13.42137 -13.27308 -13.26263 -13.14833 -12.95254 -12.63150 -12.59186 -12.42838 -12.28771 -11.96604 -11.76936 -11.57071 -11.35097 -11.13043 -10.91166 -10.74930 -10.48815 -10.43055 -10.13860 -9.81981 -9.79054 -9.69534 -8.91627 -8.77625 -8.58076 -8.40499 -6.71905 -5.87227 -3.28488 1.45447 1.48489 2.39249 2.85839 3.34483 3.42376 3.45870 3.80398 3.87614 4.07087 4.45597 4.56417 4.59600 4.83380 4.90497 5.05393 5.17095 5.20689 5.27390 5.34839 5.37469 5.42879 5.54025 5.57311 5.66456 5.68462 5.81399 5.87758 6.08282 6.12266 6.17585 6.23107 6.30165 6.41262 6.53519 6.57759 6.61676 6.69643 6.75499 6.84399 7.07643 7.15906 7.42762 7.53372 7.78315 8.12303 8.38014 9.12835 9.76115 10.34783 11.20868 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.005370 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.382317 B = 5212.893791 C = 6952.073255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.277 3.723 3 F -0.187 7.187 4 F -0.185 7.185 5 C 0.486 3.514 6 O -0.517 6.517 7 N -0.676 5.676 8 C 0.136 3.864 9 H 0.087 0.913 10 C 0.135 3.865 11 N -0.584 5.584 12 C -0.258 4.258 13 H 0.062 0.938 14 C 0.012 3.988 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.171 3.829 21 C -0.134 4.134 22 C -0.053 4.053 23 H 0.091 0.909 24 C -0.067 4.067 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.118 4.118 29 C -0.109 4.109 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.406 0.594 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 15.741 -2.949 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.238 3.762 3 F -0.168 7.168 4 F -0.166 7.166 5 C 0.266 3.734 6 O -0.393 6.393 7 N -0.328 5.328 8 C 0.030 3.970 9 H 0.105 0.895 10 C 0.008 3.992 11 N -0.307 5.307 12 C -0.388 4.388 13 H 0.079 0.921 14 C -0.188 4.188 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.045 3.955 21 C -0.173 4.173 22 C -0.072 4.072 23 H 0.109 0.891 24 C -0.067 4.067 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.136 4.136 29 C -0.127 4.127 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.244 0.756 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.001 15.516 -3.575 15.922 hybrid contribution 0.178 -0.239 1.466 1.495 sum 0.179 15.277 -2.109 15.423 Atomic orbital electron populations 1.22602 0.89206 1.06417 1.05587 1.21434 0.95803 0.76005 0.82986 1.93059 1.90596 1.36518 1.96674 1.93099 1.90394 1.80550 1.52567 1.20530 0.83159 0.80871 0.88841 1.90732 1.55739 1.59795 1.33072 1.46055 1.16079 1.52957 1.17674 1.21728 0.92699 0.95659 0.86909 0.89536 1.21309 0.97238 0.88813 0.91845 1.43977 1.01936 1.60479 1.24277 1.18997 0.99329 1.07449 1.12994 0.92061 1.25027 0.98964 0.95182 0.99637 1.70107 1.27345 1.19690 1.36340 0.86479 0.78012 0.78395 0.84904 1.21257 1.21559 1.20375 1.20729 0.84115 0.89187 1.01429 1.22303 0.99254 1.00539 0.95208 1.20459 0.94457 0.91142 1.01094 0.89078 1.20031 0.97206 0.95871 0.93618 1.21074 0.99447 0.95591 0.97496 1.21081 1.00456 0.93885 0.98464 1.21061 1.00605 0.99475 0.93724 1.21120 0.98974 0.95582 0.97916 1.21039 0.99758 0.93564 0.98371 0.88652 0.89511 0.88313 0.75580 0.91954 0.95027 0.93606 0.90369 0.95753 0.92760 0.92286 0.86144 0.86445 0.86574 0.86392 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.92 37.16 0.33 -1.78 16 2 C 0.28 4.01 2.47 -27.88 -0.07 3.94 16 3 F -0.19 -2.66 17.05 2.25 0.04 -2.62 16 4 F -0.19 -2.89 16.51 2.25 0.04 -2.85 16 5 C 0.49 8.10 7.23 -10.98 -0.08 8.02 16 6 O -0.52 -9.59 15.68 5.56 0.09 -9.50 16 7 N -0.68 -11.20 3.48 -53.69 -0.19 -11.39 16 8 C 0.14 2.28 2.30 -67.81 -0.16 2.12 16 9 H 0.09 1.47 7.43 -51.93 -0.39 1.08 16 10 C 0.14 2.73 6.15 -3.71 -0.02 2.70 16 11 N -0.58 -13.47 2.89 -172.31 -0.50 -13.97 16 12 C -0.26 -6.76 9.50 -15.06 -0.14 -6.90 16 13 H 0.06 1.63 7.93 -52.48 -0.42 1.21 16 14 C 0.01 0.32 4.72 -17.43 -0.08 0.24 16 15 N -0.89 -24.97 11.84 55.49 0.66 -24.32 16 16 Si 0.89 21.13 29.61 -169.99 -5.03 16.10 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.17 3.69 5.34 -3.71 -0.02 3.67 16 21 C -0.13 -2.25 4.87 -26.58 -0.13 -2.38 16 22 C -0.05 -0.80 2.21 -91.69 -0.20 -1.00 16 23 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 24 C -0.07 -0.94 4.78 -104.62 -0.50 -1.44 16 25 C -0.12 -1.49 9.67 -39.58 -0.38 -1.88 16 26 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 27 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 28 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 29 C -0.11 -1.50 8.19 -39.59 -0.32 -1.83 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.10 1.10 7.87 -51.93 -0.41 0.70 16 33 H 0.41 6.65 4.64 -40.82 -0.19 6.46 16 34 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 1.91 6.49 -51.93 -0.34 1.57 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.91 5.49 -51.93 -0.28 0.63 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.12 1.34 7.97 -52.49 -0.42 0.92 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.11 1.59 5.11 -52.49 -0.27 1.32 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -29.32 366.80 -8.39 -37.71 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.05 Total: 7.36 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.97 Total: -2.04 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.03 Total: -49.67 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.08 Total: -5.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.32 -8.39 -37.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087419438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.179 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds